BAC Information

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BAC

Clone NameB6Ng01-333O11
Chromosome2 (Build37)
Map Location 39,949,325 - 40,091,314
singlet/doubletdoublet
Overlap geneLOC100042604, Magmas-ps
Upstream geneA930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
Downstream geneLOC666531, Lrp1b, LOC100042629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333O11.bB6Ng01-333O11.g
ACCGA119545GA119546
length1,1541,122
definitionB6Ng01-333O11.b B6Ng01-333O11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,090,138 - 40,091,314)(39,949,325 - 39,950,470)
sequence
gaattctccttcgcctaggacgtgtcactccctgattggctgcagcccat
cggccgagttgacgtcacggggaaggcagagcacatggagtagagaacca
ccctcggcatatgcgcagattatttgtttaccacttagaacacagctgtc
agcgccatcttgtaacggcgaatgtgggcgcggctcccaacacatattga
aatctttttatgtaggagattcttttaaaatacacatttagtttgcaggt
gggatttgtggcatatgtctataatcttacctcagtacaagcttgggaaa
cagaaagatgaaataaaaattatacatttaatctgcaattggttactatt
ggttaacccaaaactaaagagcagctgactttaattcttgcagttgaata
taatcatctgtcattggcatcattgcaccaatcaggtcatactttaccca
gattttagagtactgtttccaaaatgtggtccctggcagagattgattaa
aaatatatcacctgaatggagagagtgacatatgtgtaatagaagcaatc
acgatccaaacagggtttatgacctcatactgtgctccttccttcccttt
gatagagggaagataacagacccttccttaccagggactctctagcctgc
ccatgtatcctagagatgcaggttaactaaaatgtacttccccagaaaag
tgtcaatctgtggtacctgatcccacaccggctgcttcctagagatactg
acttcctcactctttagcaagctagtatggcatagatatacagacaagct
acctgtacaccatatcagagacacagctaagaaaaatcctcatcacacac
acccacactccgccctccccccacacacaaagagtttgaaatttcacaaa
gtatgctttctgcaactcaaccagccctacagaaagggttctccagtaga
ttgcttacacaaagctaaagacaagaaataaaaaagttgtaaagttccta
aagtttacaggattataaagaacagaaaaacaaacagctcagtgaactta
aagaaatcagtgcctgagtaatctccaacaaattgtaacccagattgacg
aaggacaaacacagtgatgattgaactgatcataaaatagtcatggtgat
agaa

gaattcatattgagtttgccaactgctccattttttgttcacttggtgct
tcctatgctgcccatatataagaagtctcaccatgagctcccatcacgat
ggagccagcactaagtgtgatttctgtaccatgagtgaaaataaatattt
tctttcttaatatcttcccagtaacaaggaaagtaattaatacaggaatt
ggtcatgggaattaagacctttattgtgataaacctagatttaagaagga
aagtgaaagcaaaattggaaagtcctagaatatggaaactggcattctgt
tagaaatttggaaaggcagaatgccagtggaaagttagactagtgcattt
cagaggaaaacaaggatctgtcactaaagaagaaattaatggatcttcac
agaagaaattaatggtccattcggcaaagaagtgtgctaatttctgcaga
tgtacggtgagaaagagaaatgtgatggctaaagttctaagtctaaattt
cagtgcttacaagatttataaaatagaaatgcatctaacatttaagccca
acttgttcaaggacaaataacttcttagaatgctgggggcggtgcacata
agataaccagccagcgtttttcacttcttgatgcatggttggttgctcca
atcgcacaggatatgcttgataacatgtaagtgggagctttgtagaaagg
aagtatgccaaggtgtatgtttgcctctgagtggaccaaggcaggaaata
tgtagccttgtggatttgcttttatatgcacctgactaacgtaattccgg
attattttctgagaatcctagttatagatctggccagttttaatcatcct
ggcaagaatttaataaagattgcttcaagtttggctcaaaatttgttata
ttgttcttgctctcaaccagtgggatcaataaaagaagtagaaagataga
tgtagaaaaaaaaaatgtgtttgttgagaaagatctgattccattaaact
atagtcagctgcagagacgaaacactatatgtcaaataatatgcattaac
agaaatgtcataccttccaagtcaatagaagttcgtgaaagcagaatgca
caggctgtcaagacttcgagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_40090138_40091314
seq2: B6Ng01-333O11.b_52_1205 (reverse)

seq1  TTCTATTCAACATGACTATATTTTATTGAATTCAGTTTTCAAATCATTCA  50
      ||||| ||| ||||||  ||||||| |||  ||||||    ||||| |||
seq2  TTCTA-TCACCATGAC--TATTTTA-TGA--TCAGTT---CAATCA-TCA  40

seq1  CTTGTGTTTGTCCTTTCGTTCAATCTTGTGTTTACATTTTGTTGGAGATT  100
      | ||||||||||| |||| |||||||   | ||||| |||||||||||||
seq2  C-TGTGTTTGTCC-TTCG-TCAATCT--GGGTTACAATTTGTTGGAGATT  85

seq1  ACTCAGGCACTGATTTTCTTTTAAGTTCACTGAGCTGTTTGTTTTTCTGT  150
      ||||||||||||||||   |||||||||||||||||||||||||||||||
seq2  ACTCAGGCACTGATTT--CTTTAAGTTCACTGAGCTGTTTGTTTTTCTGT  133

seq1  TCTTTATAATTCTTGTAAACTTTAGGAACTTTTACAACTTTTTTATTTCT  200
      ||||||||| || |||||||||||||||| ||||||||||||||||||| 
seq2  TCTTTATAA-TCCTGTAAACTTTAGGAAC-TTTACAACTTTTTTATTTC-  180

seq1  TTGTCTTTAGCTTTGTGTAAGCAATTCTTACTGGAGAACCCTTTCTGTAG  250
      |||||||||||||||||||||||||   ||||||||||||||||||||||
seq2  TTGTCTTTAGCTTTGTGTAAGCAAT--CTACTGGAGAACCCTTTCTGTAG  228

seq1  GGCTGGTTGAGTTGCAGAAAGCATACTTTGTTGAAATTTCAAACTCTTTG  300
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGCTGGTTGAGTTGCAGAAAGCATACTTTG-TGAAATTTCAAACTCTTTG  277

seq1  TGTGTGGGGGGAGGGCGGAGTGTGGGTGTGTGTGATGAGGATTTTTCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGGGGGAGGGCGGAGTGTGGGTGTGTGTGATGAGGATTTTTCTTA  327

seq1  GCTGTGTCTCTGATATGGTGTACAGGTAGCTTGTCTGTATATCTATGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTCTCTGATATGGTGTACAGGTAGCTTGTCTGTATATCTATGCCA  377

seq1  TACTAGCTTGCTAAAGAGTGAGGAAGTCAGTATCTCTAGGAAGCAGCCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGCTTGCTAAAGAGTGAGGAAGTCAGTATCTCTAGGAAGCAGCCGG  427

seq1  TGTGGGATCAGGTACCACAGATTGACACTTTTCTGGGGAAGTACATTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGATCAGGTACCACAGATTGACACTTTTCTGGGGAAGTACATTTTA  477

seq1  GTTAACCTGCATCTCTAGGATACATGGGCAGGCTAGAGAGTCCCTGGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACCTGCATCTCTAGGATACATGGGCAGGCTAGAGAGTCCCTGGTAA  527

seq1  GGAAGGGTCTGTTATCTTCCCTCTATCAAAGGGAAGGAAGGAGCACAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGTCTGTTATCTTCCCTCTATCAAAGGGAAGGAAGGAGCACAGTA  577

seq1  TGAGGTCATAAACCCTGTTTGGATCGTGATTGCTTCTATTACACATATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCATAAACCCTGTTTGGATCGTGATTGCTTCTATTACACATATGT  627

seq1  CACTCTCTCCATTCAGGTGATATATTTTTAATCAATCTCTGCCAGGGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCTCCATTCAGGTGATATATTTTTAATCAATCTCTGCCAGGGACC  677

seq1  ACATTTTGGAAACAGTACTCTAAAATCTGGGTAAAGTATGACCTGATTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTGGAAACAGTACTCTAAAATCTGGGTAAAGTATGACCTGATTGG  727

seq1  TGCAATGATGCCAATGACAGATGATTATATTCAACTGCAAGAATTAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGATGCCAATGACAGATGATTATATTCAACTGCAAGAATTAAAGT  777

seq1  CAGCTGCTCTTTAGTTTTGGGTTAACCAATAGTAACCAATTGCAGATTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCTCTTTAGTTTTGGGTTAACCAATAGTAACCAATTGCAGATTAA  827

seq1  ATGTATAATTTTTATTTCATCTTTCTGTTTCCCAAGCTTGTACTGAGGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAATTTTTATTTCATCTTTCTGTTTCCCAAGCTTGTACTGAGGTA  877

seq1  AGATTATAGACATATGCCACAAATCCCACCTGCAAACTAAATGTGTATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATAGACATATGCCACAAATCCCACCTGCAAACTAAATGTGTATTT  927

seq1  TAAAAGAATCTCCTACATAAAAAGATTTCAATATGTGTTGGGAGCCGCGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAATCTCCTACATAAAAAGATTTCAATATGTGTTGGGAGCCGCGC  977

seq1  CCACATTCGCCGTTACAAGATGGCGCTGACAGCTGTGTTCTAAGTGGTAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTCGCCGTTACAAGATGGCGCTGACAGCTGTGTTCTAAGTGGTAA  1027

seq1  ACAAATAATCTGCGCATATGCCGAGGGTGGTTCTCTACTCCATGTGCTCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAATCTGCGCATATGCCGAGGGTGGTTCTCTACTCCATGTGCTCT  1077

seq1  GCCTTCCCCGTGACGTCAACTCGGCCGATGGGCTGCAGCCAATCAGGGAG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCCCGTGACGTCAACTCGGCCGATGGGCTGCAGCCAATCAGGGAG  1127

seq1  TGACACGTCCTAGGCGAAGGAGAATTC  1177
      |||||||||||||||||||||||||||
seq2  TGACACGTCCTAGGCGAAGGAGAATTC  1154


seq1: chr2_39949325_39950470
seq2: B6Ng01-333O11.g_66_1187

seq1  GAATTCATATTGAGTTTGCCAACTGCTCCATTTTTTGTTCACTTGGTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTGAGTTTGCCAACTGCTCCATTTTTTGTTCACTTGGTGCT  50

seq1  TCCTATGCTGCCCATATATAAGAAGTCTCACCATGAGCTCCCATCACGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGCTGCCCATATATAAGAAGTCTCACCATGAGCTCCCATCACGAT  100

seq1  GGAGCCAGCACTAAGTGTGATTTCTGTACCATGAGTGAAAATAAATATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAGCACTAAGTGTGATTTCTGTACCATGAGTGAAAATAAATATTT  150

seq1  TCTTTCTTAATATCTTCCCAGTAACAAGGAAAGTAATTAATACAGGAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTAATATCTTCCCAGTAACAAGGAAAGTAATTAATACAGGAATT  200

seq1  GGTCATGGGAATTAAGACCTTTATTGTGATAAACCTAGATTTAAGAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATGGGAATTAAGACCTTTATTGTGATAAACCTAGATTTAAGAAGGA  250

seq1  AAGTGAAAGCAAAATTGGAAAGTCCTAGAATATGGAAACTGGCATTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAAGCAAAATTGGAAAGTCCTAGAATATGGAAACTGGCATTCTGT  300

seq1  TAGAAATTTGGAAAGGCAGAATGCCAGTGGAAAGTTAGACTAGTGCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTTGGAAAGGCAGAATGCCAGTGGAAAGTTAGACTAGTGCATTT  350

seq1  CAGAGGAAAACAAGGATCTGTCACTAAAGAAGAAATTAATGGATCTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAAAACAAGGATCTGTCACTAAAGAAGAAATTAATGGATCTTCAC  400

seq1  AGAAGAAATTAATGGTCCATTCGGCAAAGAAGTGTGCTAATTTCTGCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAATTAATGGTCCATTCGGCAAAGAAGTGTGCTAATTTCTGCAGA  450

seq1  TGTACGGTGAGAAAGAGAAATGTGATGGCTAAAGTTCTAAGTCTAAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACGGTGAGAAAGAGAAATGTGATGGCTAAAGTTCTAAGTCTAAATTT  500

seq1  CAGTGCTTACAAGATTTATAAAATAGAAATGCATCTAACATTTAAGCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTTACAAGATTTATAAAATAGAAATGCATCTAACATTTAAGCCCA  550

seq1  ACTTGTTCAAGGACAAATAACTTCTTAGAATGCTGGGGGCGGTGCACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTCAAGGACAAATAACTTCTTAGAATGCTGGGGGCGGTGCACATA  600

seq1  AGATAACCAGCCAGCGTTTTTCACTTCTTGATGCATGGTTGGTTGCTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACCAGCCAGCGTTTTTCACTTCTTGATGCATGGTTGGTTGCTCCA  650

seq1  ATCGCACAGGATATGCTTGATAACATGTAAGTGGGAGCTTTGTAGAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCACAGGATATGCTTGATAACATGTAAGTGGGAGCTTTGTAGAAAGG  700

seq1  AAGTATGCCAAGGTGTATGTTTGCCTCTGAGTGGACCAAGGCAGGAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGCCAAGGTGTATGTTTGCCTCTGAGTGGACCAAGGCAGGAAATA  750

seq1  TGTAGCCTTGTGGATTTGCTTTTATATGCACCTGACTAACGTAATTCCGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCTTGTGGATTTGCTTTTATATGCACCTGACTAACGTAATTCCGG  800

seq1  ATTATTTTCTGAGAATCCTAGTTATAGATCTGGCCAGTTTTAATCATCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTCTGAGAATCCTAGTTATAGATCTGGCCAGTTTTAATCATCCT  850

seq1  GGCAAGAATTTAATAAAGATTGCTTCAAGTTTGGCTCAAAATTTGTTATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGAATTTAATAAAGATTGCTTCAAGTTTGGCTCAAAATTTGTTATA  900

seq1  TTGTTCTTGCTCTCAACCAGTGGGATCAATAAAAGAAGGTAGAAAAGATA  950
      ||||||||||||||||||||||||||||||||||||| |||| |||||||
seq2  TTGTTCTTGCTCTCAACCAGTGGGATCAATAAAAGAA-GTAG-AAAGATA  948

seq1  GATGTAGAAAAAAAAAATGTGGTTTGTTGAGGAAAGAATCTTGATTCCCA  1000
      |||||||||||||||||||| ||||||||| ||||| ||| ||||| |||
seq2  GATGTAGAAAAAAAAAATGT-GTTTGTTGA-GAAAG-ATC-TGATT-CCA  993

seq1  TTAAAACTATAGTCAAGGCTGCAGAGGACGAAACAACTATAATTGTCAAA  1050
      || ||||||||||||  |||||||| |||||||| ||||||  |||||||
seq2  TT-AAACTATAGTCA--GCTGCAGA-GACGAAAC-ACTATA--TGTCAAA  1036

seq1  TAATTATGCCATTTACCAGAAATGTCATACTTTCAAAAGGTCAATAGGAA  1100
      ||| |||||   ||| |||||||||||||| ||| ||  ||||||||   
seq2  TAA-TATGC--ATTAACAGAAATGTCATACCTTCCAA--GTCAATAG---  1078

seq1  AGGTTCGTGAAAGGCAAGATGCCACAGGCTGTCAAGAACTTC-AGAA  1146
      | |||||||||| |||  ||| |||||||||||||| ||||| ||||
seq2  AAGTTCGTGAAA-GCAGAATG-CACAGGCTGTCAAG-ACTTCGAGAA  1122


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