BAC Information

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BAC

Clone NameB6Ng01-334G12
Chromosome2 (Build37)
Map Location 114,489,603 - 114,609,298
singlet/doubletdoublet
Overlap geneLOC100043219
Upstream geneFmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770, Atpbd4
Downstream geneLOC100043222, LOC100043232, LOC100043236, BC052040
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334G12.bB6Ng01-334G12.g
ACCGA119917GA119918
length1,1931,020
definitionB6Ng01-334G12.b B6Ng01-334G12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,608,082 - 114,609,298)(114,489,603 - 114,490,516)
sequence
gaattctccttgagaacagactaagatcttgtcctttattgaacttacat
attgtgagctgagaataaggggagtttcacccgaatttaaataggaaagc
aagatgcctaggttaaatgtgggttccaacactttaaccaatttgttttg
ctcatggtgtttttcaattttgaaaatttccagagagttaatcttaaagt
gcttattatcagcagcatgtggatggtatgagtgtacggtcattgagtca
ccatttatcaaattgtttgattcaggttttaagtcattgctagaagtagt
aaacacaaattaatttcagaacagagaaataaatgtccagttacatatca
caatagttttgatatccaaatagatatacggggcaagagtataggcactg
cctgtgtattcctccaaccaacagttaaaagccacgaatcagcttttact
tttgaaactttaaagtggtggaatgaattccattttttactccatttata
attggaaataggctttgcaatgaacagaatctaagcttggatgaataagg
ttgaatgtccagtataaatgcacaaggctgaacctaagtgatgtggacca
gggctgggatgtccaggccctgacattgtctgcttacctatcaggctgtt
tctagttcttttccatgtgaactgcttgccagataagagatggcaaatgc
tggaagtgagtaactttccagtgagtaagagcagtcccttctatctccgg
gaaagaatgacaggtctgtgaaggccaaaggacccaaagcacctactgca
agagactcactcagtaccttggtctccaacccaccattcttgtgagctcc
cggatttgataagcagcctttccttgcccatgaggctataacatgataat
gccattcaataacgcttacaccctttcctgctgtttgtccagcacaggaa
accaaggattttcttgtcgtgtggacacagcggaatatctagccagcaaa
tacagcccttgcatgcaacagagccatatctcttcgtctgacatctctgc
atgctaagacaatctactcttgcttttttttccctgacttgactgactac
tctgaaaccctcaggaagggaaaagcatgtaactccactcagcatctggt
atttcagcatttgacatacactgtggtaaagaggtggaagaca
gaattcaactaattttattatataagagctcatctctcactttggcctca
agaatgtttattttattaaatgaaagtgtattctgtgtgtgtttagattt
ataattttatgtgttttgatgagttgtactgatcttgtcttactttattt
ccaactccgtttgtaagaaaatatagatattcttacactcctttagattc
tatttgtttagaatataattttctatcatttccctttcagtttgtgtgta
aatctttgctgtcatacagggttctgttgtattcctattattatggggat
tgagccaaggactttggatacacaagacaagcagcctaccactgaactgc
attcccagcttagtatgttatttcttgaagaaaatacagacaaatataca
cataaaagaaaagcacacatgaatatttttaggtgaccggattccccaaa
atgatctataaattcaaagaaatcttcatcaaagtatcaatgacattctt
caaagaactagggtgaaaatctttaaactcatatgatggcataaagttcc
taaataactaaaatgaattttaaaaaattgagccaaaaaaagaaaaaaac
aagctataataatctgacataatctcaagacatgctacttattcatagca
gccctaacacaataaaggcagacaccaagaaaatgaaacttaatagagac
ctcaggtggaaaaaagcctacccattgaaagctaactggttcaacaacgg
ggcccaaaactttcactgaagaagggatggccacctttataaatggttct
gggaaagctggatatcctatatagataatttaaacttgacccatctctca
cctcatggaaaaatcaactaagagtgagtcaaaagtttaatataagacct
gaaaccactagaaagaaataaaaggaaaacatgtcaagatactggtacag
gcaaagattcactctttctgggaatgcaaattagtgaaatgtctatgaaa
attatggaacttcttcagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_114608082_114609298
seq2: B6Ng01-334G12.b_48_1240 (reverse)

seq1  TGTCTTCAACCTCTTTACCCACGTGCTATGTCAAAATTTTGGCTGAAAAA  50
      ||||||| |||||||||||   ||| |||||||||      ||||||| |
seq2  TGTCTTCCACCTCTTTACCACAGTG-TATGTCAAA-----TGCTGAAATA  44

seq1  TACAGATGCTGAGTGGAAGTTTACATTGCTCT--CCTCTCTGAGGGTTTT  98
        |||||||||||||||   ||||| |||| |  |||  ||||||| |||
seq2  -CCAGATGCTGAGTGGA--GTTACA-TGCTTTTCCCTTCCTGAGGG-TTT  89

seq1  CAGAGTAGTCAGTTTAAAGTCAGGGGAAAAAAAAAGCAAAGAGTAGATTG  148
      ||||||||||||  | |||||||||  |||||||||| ||||||||||||
seq2  CAGAGTAGTCAG--TCAAGTCAGGG--AAAAAAAAGC-AAGAGTAGATTG  134

seq1  TTCTTAGCATGCAGGAAGGATGTCAGACGGAAAGAGGATATGGCTCTGTT  198
       |||||||||||||    |||||||||||  |||| |||||||||||| |
seq2  -TCTTAGCATGCAG---AGATGTCAGACG--AAGA-GATATGGCTCTG-T  176

seq1  TGCATGCAAGGGCTGGTATTTGCTGGCTAGATATTTCCGCTGTGTCCACA  248
      |||||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  TGCATGCAAGGGCT-GTATTTGCTGGCTAGATA-TTCCGCTGTGTCCACA  224

seq1  CGACAAGAAAATCCTTGGTTTCCTGTGCTGGACAAACAGCAGGAAAGGGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAAGAAAATCCTTGGTTTCCTGTGCTGGACAAACAGCAGGAAAGGGT  274

seq1  GTAAGCGTTATTGAATGGCATTATCATGTTATAGCCTCATGGGCAAGGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCGTTATTGAATGGCATTATCATGTTATAGCCTCATGGGCAAGGAA  324

seq1  AGGCTGCTTATCAAATCCGGGAGCTCACAAGAATGGTGGGTTGGAGACCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCTTATCAAATCCGGGAGCTCACAAGAATGGTGGGTTGGAGACCA  374

seq1  AGGTACTGAGTGAGTCTCTTGCAGTAGGTGCTTTGGGTCCTTTGGCCTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTGAGTGAGTCTCTTGCAGTAGGTGCTTTGGGTCCTTTGGCCTTC  424

seq1  ACAGACCTGTCATTCTTTCCCGGAGATAGAAGGGACTGCTCTTACTCACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCTGTCATTCTTTCCCGGAGATAGAAGGGACTGCTCTTACTCACT  474

seq1  GGAAAGTTACTCACTTCCAGCATTTGCCATCTCTTATCTGGCAAGCAGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTTACTCACTTCCAGCATTTGCCATCTCTTATCTGGCAAGCAGTT  524

seq1  CACATGGAAAAGAACTAGAAACAGCCTGATAGGTAAGCAGACAATGTCAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGAAAAGAACTAGAAACAGCCTGATAGGTAAGCAGACAATGTCAG  574

seq1  GGCCTGGACATCCCAGCCCTGGTCCACATCACTTAGGTTCAGCCTTGTGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGACATCCCAGCCCTGGTCCACATCACTTAGGTTCAGCCTTGTGC  624

seq1  ATTTATACTGGACATTCAACCTTATTCATCCAAGCTTAGATTCTGTTCAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATACTGGACATTCAACCTTATTCATCCAAGCTTAGATTCTGTTCAT  674

seq1  TGCAAAGCCTATTTCCAATTATAAATGGAGTAAAAAATGGAATTCATTCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGCCTATTTCCAATTATAAATGGAGTAAAAAATGGAATTCATTCC  724

seq1  ACCACTTTAAAGTTTCAAAAGTAAAAGCTGATTCGTGGCTTTTAACTGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTTAAAGTTTCAAAAGTAAAAGCTGATTCGTGGCTTTTAACTGTT  774

seq1  GGTTGGAGGAATACACAGGCAGTGCCTATACTCTTGCCCCGTATATCTAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGAGGAATACACAGGCAGTGCCTATACTCTTGCCCCGTATATCTAT  824

seq1  TTGGATATCAAAACTATTGTGATATGTAACTGGACATTTATTTCTCTGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATATCAAAACTATTGTGATATGTAACTGGACATTTATTTCTCTGTT  874

seq1  CTGAAATTAATTTGTGTTTACTACTTCTAGCAATGACTTAAAACCTGAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTAATTTGTGTTTACTACTTCTAGCAATGACTTAAAACCTGAAT  924

seq1  CAAACAATTTGATAAATGGTGACTCAATGACCGTACACTCATACCATCCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAATTTGATAAATGGTGACTCAATGACCGTACACTCATACCATCCA  974

seq1  CATGCTGCTGATAATAAGCACTTTAAGATTAACTCTCTGGAAATTTTCAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGCTGATAATAAGCACTTTAAGATTAACTCTCTGGAAATTTTCAA  1024

seq1  AATTGAAAAACACCATGAGCAAAACAAATTGGTTAAAGTGTTGGAACCCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAAAACACCATGAGCAAAACAAATTGGTTAAAGTGTTGGAACCCA  1074

seq1  CATTTAACCTAGGCATCTTGCTTTCCTATTTAAATTCGGGTGAAACTCCC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAACCTAGGCATCTTGCTTTCCTATTTAAATTCGGGTGAAACTCCC  1124

seq1  CTTATTCTCAGCTCACAATATGTAAGTTCAATAAAGGACAAGATCTTAGT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCTCAGCTCACAATATGTAAGTTCAATAAAGGACAAGATCTTAGT  1174

seq1  CTGTTCTCAAGGAGAATTC  1217
      |||||||||||||||||||
seq2  CTGTTCTCAAGGAGAATTC  1193

seq1: chr2_114489603_114490516
seq2: B6Ng01-334G12.g_64_977

seq1  GAATTCAACTAATTTTATTATATAAGAGCTCATCTCTCACTTTGGCCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTAATTTTATTATATAAGAGCTCATCTCTCACTTTGGCCTCA  50

seq1  AGAATGTTTATTTTATTAAATGAAAGTGTATTCTGTGTGTGTTTAGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTTTATTTTATTAAATGAAAGTGTATTCTGTGTGTGTTTAGATTT  100

seq1  ATAATTTTATGTGTTTTGATGAGTTGTACTGATCTTGTCTTACTTTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTATGTGTTTTGATGAGTTGTACTGATCTTGTCTTACTTTATTT  150

seq1  CCAACTCCGTTTGTAAGAAAATATAGATATTCTTACACTCCTTTAGATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCCGTTTGTAAGAAAATATAGATATTCTTACACTCCTTTAGATTC  200

seq1  TATTTGTTTAGAATATAATTTTCTATCATTTCCCTTTCAGTTTGTGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTTAGAATATAATTTTCTATCATTTCCCTTTCAGTTTGTGTGTA  250

seq1  AATCTTTGCTGTCATACAGGGTTCTGTTGTATTCCTATTATTATGGGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTGCTGTCATACAGGGTTCTGTTGTATTCCTATTATTATGGGGAT  300

seq1  TGAGCCAAGGACTTTGGATACACAAGACAAGCAGCCTACCACTGAACTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAAGGACTTTGGATACACAAGACAAGCAGCCTACCACTGAACTGC  350

seq1  ATTCCCAGCTTAGTATGTTATTTCTTGAAGAAAATACAGACAAATATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAGCTTAGTATGTTATTTCTTGAAGAAAATACAGACAAATATACA  400

seq1  CATAAAAGAAAAGCACACATGAATATTTTTAGGTGACCGGATTCCCCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAGAAAAGCACACATGAATATTTTTAGGTGACCGGATTCCCCAAA  450

seq1  ATGATCTATAAATTCAAAGAAATCTTCATCAAAGTATCAATGACATTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTATAAATTCAAAGAAATCTTCATCAAAGTATCAATGACATTCTT  500

seq1  CAAAGAACTAGGGTGAAAATCTTTAAACTCATATGATGGCATAAAGTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAACTAGGGTGAAAATCTTTAAACTCATATGATGGCATAAAGTTCC  550

seq1  TAAATAACTAAAATGAATTTTAAAAAATTGAGCCAAAAAAAGAAAAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAACTAAAATGAATTTTAAAAAATTGAGCCAAAAAAAGAAAAAAAC  600

seq1  AAGCTATAATAATCTGACATAATCTCAAGACATGCTACTTATTCATAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATAATAATCTGACATAATCTCAAGACATGCTACTTATTCATAGCA  650

seq1  GCCCTAACACAATAAAGGCAGACACCAAGAAAATGAAACTTAATAGAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAACACAATAAAGGCAGACACCAAGAAAATGAAACTTAATAGAGAC  700

seq1  CTCAGGTGGAAAAAAGCCTACCCATTGAAAGCTAACTGGTTCAACAACGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTGGAAAAAAGCCTACCCATTGAAAGCTAACTGGTTCAACAACGG  750

seq1  GGCCCAAAACTTTCACTGAAGAAGGGATGGCCACCTTTATAAATGGTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAAAACTTTCACTGAAGAAGGGATGGCCACCTTTATAAATGGTTCT  800

seq1  GGGAAAGCTGGATATCCTATATAGATAATTTAAACTTGACCCATCTCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGCTGGATATCCTATATAGATAATTTAAACTTGACCCATCTCTCA  850

seq1  CCTCATGGAAAAATCAACTAAGAGTGAGTCAAAAGTTTAATATAAGACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGGAAAAATCAACTAAGAGTGAGTCAAAAGTTTAATATAAGACCT  900

seq1  GAAACCACTAGAAA  914
      ||||||||||||||
seq2  GAAACCACTAGAAA  914