BAC Information

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BAC

Clone NameB6Ng01-334L05
Chromosome2 (Build37)
Map Location 14,679,076 - 14,680,232
singlet/doubletsinglet
Overlap geneCacnb2
Upstream geneSt8sia6, Ptpla, Stam, 2010003H20Rik, Mrc1, Slc39a12, LOC100041164, LOC625335, LOC625342
Downstream geneLOC100041220, Nsun6, Arl5b, LOC633061, LOC667329, LOC227588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334L05.bB6Ng01-334L05.g
ACCGA120141GA120142
length1,143666
definitionB6Ng01-334L05.b B6Ng01-334L05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttgatcctcctttctaactttactaaatgctgcaattgcaagtg
tacatcaccatgcctgggtttacttacttctattcatttatatatttttt
aaggttttaattaatctagattagctgtttccttgtgttatttattattt
ggttctcttatccttctctccatcctcctgggtgctgggattagaagtgt
gtaccaccccatacagctgtttgcattttaaaaatttctactaaatggtt
aaagacaattaagcaatactgaaatatccttgattgatggaacaatttga
tatgtggttagaataaaattcagctctttattaaaaacaaatgtattatg
ccagaaaccccagcattgttgcagggggcaggcaggggtaaatacagagc
cacagagctgaagcttccaggccagtcaacctaaaccaaactgtgagctt
ctggtttagccaggccctggctcaagagaagaaaggggggaagacaataa
taataatgctctgacctctgcttgtaacatatgcatagtcacatatgtgc
accacaagctatgtacatactcacatgaaggaaggaagaactgcatactt
cacataaaaccacacggagggtgaagggaaacaaggaaagatgaggaatg
aatgaagaaatgaaggcaggcaggaatgctctttaagaagaaaatgatga
accactctaagaagtagtctgaagtttccatattctgttggaaaactgag
ccccgaagagtaattgccatgctctctatggcaaagctcataaacataaa
cttgagttgagttcctccaactcacttctcaaagccaggatagcttttca
catcttatttttcagatgatgaaaatccttgggttatttttgagcaactg
ctatgtatttgcttatttatagaaacaggaaggtatggaaacaaaaacac
atgtataatgcattcattatctttaaaataaatcactcttagcaggcata
tggaatgagccttcaatcgtgatctcaagacattgaaatagaggtgatca
gtagtttgaaattagcttgaactagagctgaggatcaccttgatacacag
aggaattctatcccatacctccctacctataaaatagaggaaa

gaattctacacagtgaggatgtacattatagtagtgtgtttacatttgta
gctgttgctttaacttttagtgactttgagtaatagaaaagctcacctgg
gcagcactgcagagctggccgtgctggtctgggcacatgtgagctggccc
tgagagcatgagagtgagagggctggctctgccccttgctggttatagca
ctgggtgagctagcagggcagcactcactggagagctttccctggaagtg
tggatgcagaagagctggcaggctgaccagctcagataccacccaagccc
agacccaggactttgagttggcccaccccaacatctaccctgtctatgaa
ctgttagagcacatgatggggtcagtcctacagatccaaatttgtaggat
ctccatgacaaaggtcaacaacaggatatctgagagtagtcctggtttgg
atccagtactgatggtgtagcagaagctagaggcctcaaaccagaccaat
gactcattgcaatgaacatttgcacgaggagacaaacgattatagagtag
aacacattgtgacacgctacagcttccacaatgagatttattttcttctg
ttttggtgaggtgggaaggtccaggggaggtttcaagggtggagggtagg
tatgaagggaagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_14679076_14680232
seq2: B6Ng01-334L05.b_48_1190

seq1  GAATTCTTGATCCTCCTTTCTAACTTTACTAAATGCTGCAATTGCAAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGATCCTCCTTTCTAACTTTACTAAATGCTGCAATTGCAAGTG  50

seq1  TACATCACCATGCCTGGGTTTACTTACTTCTATTCATTTATATATTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCACCATGCCTGGGTTTACTTACTTCTATTCATTTATATATTTTTT  100

seq1  AAGGTTTTAATTAATCTAGATTAGCTGTTTCCTTGTGTTATTTATTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTTAATTAATCTAGATTAGCTGTTTCCTTGTGTTATTTATTATTT  150

seq1  GGTTCTCTTATCCTTCTCTCCATCCTCCTGGGTGCTGGGATTAGAAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCTTATCCTTCTCTCCATCCTCCTGGGTGCTGGGATTAGAAGTGT  200

seq1  GTACCACCCCATACAGCTGTTTGCATTTTAAAAATTTCTACTAAATGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCACCCCATACAGCTGTTTGCATTTTAAAAATTTCTACTAAATGGTT  250

seq1  AAAGACAATTAAGCAATACTGAAATATCCTTGATTGATGGAACAATTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAATTAAGCAATACTGAAATATCCTTGATTGATGGAACAATTTGA  300

seq1  TATGTGGTTAGAATAAAATTCAGCTCTTTATTAAAAACAAATGTATTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGTTAGAATAAAATTCAGCTCTTTATTAAAAACAAATGTATTATG  350

seq1  CCAGAAACCCCAGCATTGTTGCAGGGGGCAGGCAGGGGTAAATACAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAACCCCAGCATTGTTGCAGGGGGCAGGCAGGGGTAAATACAGAGC  400

seq1  CACAGAGCTGAAGCTTCCAGGCCAGTCAACCTAAACCAAACTGTGAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGCTGAAGCTTCCAGGCCAGTCAACCTAAACCAAACTGTGAGCTT  450

seq1  CTGGTTTAGCCAGGCCCTGGCTCAAGAGAAGAAAGGGGGGAAGACAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTAGCCAGGCCCTGGCTCAAGAGAAGAAAGGGGGGAAGACAATAA  500

seq1  TAATAATGCTCTGACCTCTGCTTGTAACATATGCATAGTCACATATGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATGCTCTGACCTCTGCTTGTAACATATGCATAGTCACATATGTGC  550

seq1  ACCACAAGCTATGTACATACTCACATGAAGGAAGGAAGAACTGCATACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAGCTATGTACATACTCACATGAAGGAAGGAAGAACTGCATACTT  600

seq1  CACATAAAACCACACGGAGGGTGAAGGGAAACAAGGAAAGATGAGGAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAAACCACACGGAGGGTGAAGGGAAACAAGGAAAGATGAGGAATG  650

seq1  AATGAAGAAATGAAGGCAGGCAGGAATGCTCTTTAAGAAGAAAATGATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGAAATGAAGGCAGGCAGGAATGCTCTTTAAGAAGAAAATGATGA  700

seq1  ACCACTCTAAGAAGTAGTCTGAAGTTTCCATATTCTGTTGGAAAACTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCTAAGAAGTAGTCTGAAGTTTCCATATTCTGTTGGAAAACTGAG  750

seq1  CCCCGAAGAGTAATTGCCATGCTCTCTATGGCAAAGCTCATAAACATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGAAGAGTAATTGCCATGCTCTCTATGGCAAAGCTCATAAACATAAA  800

seq1  CTTGAGTTGAGTTCCTCCAACTCACTTCTCAAAGCCAGGATAGCTTTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTTGAGTTCCTCCAACTCACTTCTCAAAGCCAGGATAGCTTTTCA  850

seq1  CATCTTATTTTTCAGATGATGAAAATCCTTGGGTTATTTTTGAGCAACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTATTTTTCAGATGATGAAAATCCTTGGGTTATTTTTGAGCAACTG  900

seq1  CTATGTATTTGCTTATTTATAGAAACAGGAAGGTATGGAAACAAAAAACA  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTATGTATTTGCTTATTTATAGAAACAGGAAGGTATGGAAAC-AAAAACA  949

seq1  CATGTATAATGCATTCATTATCTTTAAAAATAAATCACTCTTAGCAAGGC  1000
      ||||||||||||||||||||||||| ||||||||||||||||||| ||||
seq2  CATGTATAATGCATTCATTATCTTT-AAAATAAATCACTCTTAGC-AGGC  997

seq1  ATATTGGAATGAGCCTTCAATCGTGGATCTCAAGACATTGAAATAGAGGT  1050
      ||| |||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATA-TGGAATGAGCCTTCAATCGT-GATCTCAAGACATTGAAATAGAGGT  1045

seq1  GAATCAGTAGTTTGAAATTAGCTTGAACTAAAGAGCTGAAGATCAACCTT  1100
      | |||||||||||||||||||||||||||  |||||||| |||||  | |
seq2  G-ATCAGTAGTTTGAAATTAGCTTGAACT--AGAGCTGAGGATCA--CCT  1090

seq1  TGATACACAGAGAAATTCTATCCCATACCTCCCCTACCCTATAAAAATAA  1150
      |||||||||||| ||||||||||||||||| ||||| |||||||||   |
seq2  TGATACACAGAGGAATTCTATCCCATACCT-CCCTA-CCTATAAAA--TA  1136

seq1  GAGGAAA  1157
      |||||||
seq2  GAGGAAA  1143


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