BAC Information

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BAC

Clone NameB6Ng01-335D05
Chromosome2 (Build37)
Map Location 53,505,381 - 53,506,456
singlet/doubletsinglet
Overlap genenone
Upstream geneCacnb4, Stam2, Fmnl2, Prpf40a, Arl6ip6, LOC666872, LOC666876
Downstream geneLOC207933, Rprm, LOC666913, LOC626563, LOC100041792, LOC100042878, Galnt13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335D05.bB6Ng01-335D05.g
ACCGA120506GA120507
length9721,075
definitionB6Ng01-335D05.b B6Ng01-335D05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgcactaaaccagtccggtcctgggctttttttggctgggagac
tattaataaatgcttctatttctttaggggatatgggactgtttagatgg
tcaacttgatcctgattcaactttggtacctggtatctgtccagaaattt
gtccattttgtccaggttttccagttttgttgagtatagccttttgtaga
aggatctgatggtgttttggatttcttcaggatctgttgttatgtctccc
ttttcatttctgattttgttaattaggattttgtccctgggccctctagt
gagtctagctaagggtttatctatcttgttgattttctcaaagaaccaac
tcctcatttggttaattctttgaatagttcttcttgtttccacttggttg
atttcgcccctgagtttatttcctgctgtctactcctcttgggtgaattt
gcttcctttttttctagagcttttagatgtgttgtcaagctgctagtatg
tgctctctccagtttcttcttggaggcactcagagctatgagtttccctc
ttagaaatgctttcattatgtcccatatgtttgggtacgttgtggcttca
ttttcattaaactctaaaaagttttaatttctttctttattccttccttg
accaaggtatcattgagaagagtgtggttcagtttccatgtgaatgttag
ctttccattatttatgttgttattgaagatcagtcttaggccatggtggt
ctgataggatgcatgggacaatttcaatatttttgtatctattgaggcct
gttttgtgaccaattatatggtcaattttggagaaaggtcccgtgaggtg
ctgagaagaatgtatatccttttgttttaggataaaatgttctgtagata
tctgtcaggtccatttgtttcataacttctgtagtttcactgtgtcctgt
ttagttctgttccacgatctgt
gaattctcacaggcacgctttaatgtgtcatttattgttagatatttgtg
attttggtccatctttaatcttgctaataagacacaagaaaaatacatag
gtacaagttggcagagtctaagtaaactttttctcacagattctcttcag
atagtctgcagattcaagacaagcatgtcgcttttcattacagtttagac
tttaccagatcgaactccatctaaagaatgacagagaagaccagaagaga
gatgtttgagaaccatggtatatatgtactttattttaattaatccaact
atggtcttaaagaacgtgttcttacacatttatataagttgagacaagca
gtgggagaatatctagctctatatcctctgaagtgtgaactttgatgttt
ctgccccatatgccagattctagattgccaacacagcattgccaaacctt
agcaaaaacactgagaaaatttggttttcccttataaatgctgtaagttg
ctattatgttttataggtcaaggtaagttaattacaagttttacataatt
ttcagctctatctaggctttcaaatgatggccaggggaactccattcttc
cacttctctcctccagcagacttctgtctgaaccatacaggtaggcttcc
cttaccccacccaacttccgggttaacagagccttctgggaaaagccaaa
gttcccttagaagcctgctatcctatgggggacatccattctcctgctac
ctctccattcacctttatagaacctgagatttctgagccatacagaacta
cagttctagaaccatgcagcccaaggatattcatcagaggcctgccacac
aggaccattgaagttaacccccccccccccaatactactacaacaagaac
attcaaggacaaaaccatccagatgctaaagacctttgaaagaacacaat
taatagagccagggcattatgatataccccaaaatatagctactcactac
agcagctctggatcctaatacaactgaaacacagaaatgatccagctatt
accacctcctgggcatattacccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_53505381_53506456
seq2: B6Ng01-335D05.g_67_1141

seq1  GAATTCTCACAGGCACGCTTTAATGTGTCATTTATTGTTAGATATTTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACAGGCACGCTTTAATGTGTCATTTATTGTTAGATATTTGTG  50

seq1  ATTTTGGTCCATCTTTAATCTTGCTAATAAGACACAAGAAAAATACATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGTCCATCTTTAATCTTGCTAATAAGACACAAGAAAAATACATAG  100

seq1  GTACAAGTTGGCAGAGTCTAAGTAAACTTTTTCTCACAGATTCTCTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGTTGGCAGAGTCTAAGTAAACTTTTTCTCACAGATTCTCTTCAG  150

seq1  ATAGTCTGCAGATTCAAGACAAGCATGTCGCTTTTCATTACAGTTTAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTGCAGATTCAAGACAAGCATGTCGCTTTTCATTACAGTTTAGAC  200

seq1  TTTACCAGATCGAACTCCATCTAAAGAATGACAGAGAAGACCAGAAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCAGATCGAACTCCATCTAAAGAATGACAGAGAAGACCAGAAGAGA  250

seq1  GATGTTTGAGAACCATGGTATATATGTACTTTATTTTAATTAATCCAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTGAGAACCATGGTATATATGTACTTTATTTTAATTAATCCAACT  300

seq1  ATGGTCTTAAAGAACGTGTTCTTACACATTTATATAAGTTGAGACAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTTAAAGAACGTGTTCTTACACATTTATATAAGTTGAGACAAGCA  350

seq1  GTGGGAGAATATCTAGCTCTATATCCTCTGAAGTGTGAACTTTGATGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGAATATCTAGCTCTATATCCTCTGAAGTGTGAACTTTGATGTTT  400

seq1  CTGCCCCATATGCCAGATTCTAGATTGCCAACACAGCATTGCCAAACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCATATGCCAGATTCTAGATTGCCAACACAGCATTGCCAAACCTT  450

seq1  AGCAAAAACACTGAGAAAATTTGGTTTTCCCTTATAAATGCTGTAAGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAACACTGAGAAAATTTGGTTTTCCCTTATAAATGCTGTAAGTTG  500

seq1  CTATTATGTTTTATAGGTCAAGGTAAGTTAATTACAAGTTTTACATAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATGTTTTATAGGTCAAGGTAAGTTAATTACAAGTTTTACATAATT  550

seq1  TTCAGCTCTATCTAGGCTTTCAAATGATGGCCAGGGGAACTCCATTCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTCTATCTAGGCTTTCAAATGATGGCCAGGGGAACTCCATTCTTC  600

seq1  CACTTCTCTCCTCCAGCAGACTTCTGTCTGAACCATACAGGTAGGCTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTCTCCTCCAGCAGACTTCTGTCTGAACCATACAGGTAGGCTTCC  650

seq1  CTTACCCCACCCAACTTCCGGGTTAACAGAGCCTTCTGGGAAAAGCCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCCCACCCAACTTCCGGGTTAACAGAGCCTTCTGGGAAAAGCCAAA  700

seq1  GTTCCCTTAGAAGCCTGCTATCCTATGGGGGACATCCATTCTCCTGCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTTAGAAGCCTGCTATCCTATGGGGGACATCCATTCTCCTGCTAC  750

seq1  CTCTCCATTCACCTTTATAGAACCTGAGATTTCTGAGCCATACAGAACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCATTCACCTTTATAGAACCTGAGATTTCTGAGCCATACAGAACTA  800

seq1  CAGTTCTAGAACCATGCAGCCCAAGGATATTCATCAGAGGCCTGCCACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTAGAACCATGCAGCCCAAGGATATTCATCAGAGGCCTGCCACAC  850

seq1  AGGACCATTGAAGTTAA-CCCCCCCCCCCCAATACTACTACAACAAGAAC  899
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGGACCATTGAAGTTAACCCCCCCCCCCCCAATACTACTACAACAAGAAC  900

seq1  ATTCAAGGACAAAACCATCCAGATGCTAAAGACCTTTGAAAGAACACAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGGACAAAACCATCCAGATGCTAAAGACCTTTGAAAGAACACAAT  950

seq1  TAATAAGAGCCAGGGCATTATGATATACCCCAAAATATAGCTACTCCACT  999
      |||| |||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAAT-AGAGCCAGGGCATTATGATATACCCCAAAATATAGCTACT-CACT  998

seq1  ACAGCAAGCTCTGGATCCTAATACAACTGAAACACAAGAAAATGATCCAG  1049
      ||||| ||||||||||||||||||||||||||||||   |||||||||||
seq2  ACAGC-AGCTCTGGATCCTAATACAACTGAAACACA--GAAATGATCCAG  1045

seq1  CTA-TACCA-CTCCTGGGCATA-TACCCAG  1076
      ||| ||||| |||||||||||| |||||||
seq2  CTATTACCACCTCCTGGGCATATTACCCAG  1075