BAC Information

Click to search

BAC

Clone NameB6Ng01-335G22
Chromosome2 (Build37)
Map Location 101,174,978 - 101,273,958
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042907, LOC241572, LOC668705
Downstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik, LOC100043302, Commd9, Ldlrad3, LOC674202, Trim44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335G22.bB6Ng01-335G22.g
ACCGA120662GA120663
length5761,093
definitionB6Ng01-335G22.b B6Ng01-335G22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,174,978 - 101,175,553)(101,272,853 - 101,273,958)
sequence
gaattccatgcctttctcacaagaacagaaaggtggttggtgcccaagga
atgtcctctgtcctccacacatataatgcacctggaatgtatattcacca
gcgtgcgcgcacacacacacaaacacacacaaatacacacacacaaataa
ataaataaaaacaatacaaagaatagtaagtagttttggctctactcaaa
gtatttccaggactcacccacttcttgacacctaatccataacaccttgc
ctaagtggtcatcttctctaaaaggatcacaatgacaacccttagtaact
cacccaaatatgttctttgtccattcatttaagctttttccatatcaata
gcctccaataactccccctcccactgaaggaaaggatcaaaatgcataca
atatcaacaaaaacctgactggatcgggcctcactactctctatgacctt
ttgctctctactactctattctgtccatatttgtgaagcacaaatgacac
aggtattcttaagaggattgcatattacagtcatttacagaatattatag
tatgtgtgtgtgtgtgtgtgtgtgtg

gaattccagaacagctgatttctccatggcagttctgatggatggatttg
ctgactccaaagcacatcgtttttatgtgatgatatactttgtgctttcc
tcccactaggaggggccgagagcaaaccatgccttcccacaaggctttcg
ttctgtggccttggagatggacattgttcttcctggactctttccgagtg
ctccagggttggccaatgttctttctggatgtaccttcccctggcaagtg
ttcccttcatccatcaaagaatgcagggcgcctggaacaccctgaggatc
tactctgagtctctgggaagtatttgccagggttcacactgtagcttggc
tgaacagattagtggggtgagccaaccttagatctcatagtacccgaagg
ggcagtgatgaatgtgcccgttatcctgaggtcatctccacctccagccc
taccccatgtgtcctggaaggctcagagtcatagggtctgatttattctt
gtccataaccgggaggtccttgtgtaggtgcagctggtgaatataatttg
gccctgagatctgacagctttgatctctaccatttttcttctcctccctg
gacccatgaggcaactctctgttgactatatttaggccagaggcagggac
caggtggcatatccctttcagggttggaaaaccttgacttatctttgaca
aagtgttgtttgccaaagtcttagacattgaaattattgccagttttctc
tcactggcctggcctggaaagggatgtctagcctctctcactcaaagctt
tgtgcaatgctggctggcaattttggtcacatctttccttaaatacagtt
gttagtgacatctaattaaatagtgatggctacttatacgagtcccttat
ttgacataatactttatactttccaaagtactgtcatgttatgacatttg
agttcacatgtttattaaatatatagactgttaagtattctattctgccc
caaagcatacactctaacatgcatagcaatatcagtgcataaaatttaaa
agtttttatcaccttcttttgcctttcattttcttcctcatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_101174978_101175553
seq2: B6Ng01-335G22.b_49_624

seq1  GAATTCCATGCCTTTCTCACAAGAACAGAAAGGTGGTTGGTGCCCAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCCTTTCTCACAAGAACAGAAAGGTGGTTGGTGCCCAAGGA  50

seq1  ATGTCCTCTGTCCTCCACACATATAATGCACCTGGAATGTATATTCACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTCTGTCCTCCACACATATAATGCACCTGGAATGTATATTCACCA  100

seq1  GCGTGCGCGCACACACACACAAACACACACAAATACACACACACAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCGCGCACACACACACAAACACACACAAATACACACACACAAATAA  150

seq1  ATAAATAAAAACAATACAAAGAATAGTAAGTAGTTTTGGCTCTACTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAAAACAATACAAAGAATAGTAAGTAGTTTTGGCTCTACTCAAA  200

seq1  GTATTTCCAGGACTCACCCACTTCTTGACACCTAATCCATAACACCTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCCAGGACTCACCCACTTCTTGACACCTAATCCATAACACCTTGC  250

seq1  CTAAGTGGTCATCTTCTCTAAAAGGATCACAATGACAACCCTTAGTAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGGTCATCTTCTCTAAAAGGATCACAATGACAACCCTTAGTAACT  300

seq1  CACCCAAATATGTTCTTTGTCCATTCATTTAAGCTTTTTCCATATCAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAAATATGTTCTTTGTCCATTCATTTAAGCTTTTTCCATATCAATA  350

seq1  GCCTCCAATAACTCCCCCTCCCACTGAAGGAAAGGATCAAAATGCATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCAATAACTCCCCCTCCCACTGAAGGAAAGGATCAAAATGCATACA  400

seq1  ATATCAACAAAAACCTGACTGGATCGGGCCTCACTACTCTCTATGACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAACAAAAACCTGACTGGATCGGGCCTCACTACTCTCTATGACCTT  450

seq1  TTGCTCTCTACTACTCTATTCTGTCCATATTTGTGAAGCACAAATGACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTCTACTACTCTATTCTGTCCATATTTGTGAAGCACAAATGACAC  500

seq1  AGGTATTCTTAAGAGGATTGCATATTACAGTCATTTACAGAATATTATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTCTTAAGAGGATTGCATATTACAGTCATTTACAGAATATTATAG  550

seq1  TATGTGTGTGTGTGTGTGTGTGTGTG  576
      ||||||||||||||||||||||||||
seq2  TATGTGTGTGTGTGTGTGTGTGTGTG  576


seq1: chr2_101272853_101273958
seq2: B6Ng01-335G22.g_64_1156 (reverse)

seq1  AGATGA-GAAGAAAATTGAAAAGGCAAAAAGAAAGTGATAAAAACTTTTT  49
      |||||| |||||||||   |||||| ||||||| ||||||||||||||| 
seq2  AGATGAGGAAGAAAAT--GAAAGGC-AAAAGAAGGTGATAAAAACTTTT-  46

seq1  AAAATTTTTAATGCACTGATA-TGCTATGCATG-TAGAGTGTTATTGGCT  97
       |||||||  ||||||||||| ||||||||||| ||||||| |||  |||
seq2  -AAATTTT--ATGCACTGATATTGCTATGCATGTTAGAGTG-TAT--GCT  90

seq1  TTGGGGGCAAGAATAGAATACTTAACAAGTCTATATATTTAAATAAAACA  147
      ||||||   ||||||||||||||||| |||||||||||||||   |||||
seq2  TTGGGG--CAGAATAGAATACTTAAC-AGTCTATATATTTAA--TAAACA  135

seq1  TGTGAAACTCAAATGTCATAACATGACAGTACTTTGGAAAGTATAAAGTA  197
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTG-AACTCAAATGTCATAACATGACAGTACTTTGGAAAGTATAAAGTA  184

seq1  TTATGTCAAAATAAGGGACTCGTATAAGTAGCCATCACTATTTAATTAGA  247
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTC-AAATAAGGGACTCGTATAAGTAGCCATCACTATTTAATTAGA  233

seq1  TGTCACTAACAACTGTATTTAAGGAAAGATGTGACCAAAATTGCCAGCCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTAACAACTGTATTTAAGGAAAGATGTGACCAAAATTGCCAGCCA  283

seq1  GCATTGCACAAAGCTTTGAGTGAGAGAGGCTAGACATCCC-TTCCAGGCC  346
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCATTGCACAAAGCTTTGAGTGAGAGAGGCTAGACATCCCTTTCCAGGCC  333

seq1  AGGCCAGTGAGAGAAAACTGGCAATAATTTCAATGTCTAAGACTTTGGCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGTGAGAGAAAACTGGCAATAATTTCAATGTCTAAGACTTTGGCA  383

seq1  AACAACACTTTGTCAAAGATAAGTCAAGGTTTTCCAACCCTGAAAGGGAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACACTTTGTCAAAGATAAGTCAAGGTTTTCCAACCCTGAAAGGGAT  433

seq1  ATGCCACCTGGTCCCTGCCTCTGGCCTAAATATAGTCAACAGAGAGTTGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACCTGGTCCCTGCCTCTGGCCTAAATATAGTCAACAGAGAGTTGC  483

seq1  CTCATGGGTCCAGGGAGGAGAAGAAAAATGGTAGAGATCAAAGCTGTCAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGGTCCAGGGAGGAGAAGAAAAATGGTAGAGATCAAAGCTGTCAG  533

seq1  ATCTCAGGGCCAAATTATATTCACCAGCTGCACCTACACAAGGACCTCCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGGGCCAAATTATATTCACCAGCTGCACCTACACAAGGACCTCCC  583

seq1  GGTTATGGACAAGAATAAATCAGACCCTATGACTCTGAGCCTTCCAGGAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATGGACAAGAATAAATCAGACCCTATGACTCTGAGCCTTCCAGGAC  633

seq1  ACATGGGGTAGGGCTGGAGGTGGAGATGACCTCAGGATAACGGGCACATT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGGTAGGGCTGGAGGTGGAGATGACCTCAGGATAACGGGCACATT  683

seq1  CATCACTGCCCCTTCGGGTACTATGAGATCTAAGGTTGGCTCACCCCACT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTGCCCCTTCGGGTACTATGAGATCTAAGGTTGGCTCACCCCACT  733

seq1  AATCTGTTCAGCCAAGCTACAGTGTGAACCCTGGCAAATACTTCCCAGAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTTCAGCCAAGCTACAGTGTGAACCCTGGCAAATACTTCCCAGAG  783

seq1  ACTCAGAGTAGATCCTCAGGGTGTTCCAGGCGCCCTGCATTCTTTGATGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGTAGATCCTCAGGGTGTTCCAGGCGCCCTGCATTCTTTGATGG  833

seq1  ATGAAGGGAACACTTGCCAGGGGAAGGTACATCCAGAAAGAACATTGGCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGGAACACTTGCCAGGGGAAGGTACATCCAGAAAGAACATTGGCC  883

seq1  AACCCTGGAGCACTCGGAAAGAGTCCAGGAAGAACAATGTCCATCTCCAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGGAGCACTCGGAAAGAGTCCAGGAAGAACAATGTCCATCTCCAA  933

seq1  GGCCACAGAACGAAAGCCTTGTGGGAAGGCATGGTTTGCTCTCGGCCCCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAGAACGAAAGCCTTGTGGGAAGGCATGGTTTGCTCTCGGCCCCT  983

seq1  CCTAGTGGGAGGAAAGCACAAAGTATATCATCACATAAAAACGATGTGCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTGGGAGGAAAGCACAAAGTATATCATCACATAAAAACGATGTGCT  1033

seq1  TTGGAGTCAGCAAATCCATCCATCAGAACTGCCATGGAGAAATCAGCTGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTCAGCAAATCCATCCATCAGAACTGCCATGGAGAAATCAGCTGT  1083

seq1  TCTGGAATTC  1106
      ||||||||||
seq2  TCTGGAATTC  1093


| Home | SequenceCutter | Blast | Download |