BAC Information

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BAC

Clone NameB6Ng01-335I18
Chromosome2 (Build37)
Map Location 146,007,208 - 146,132,199
singlet/doubletdoublet
Overlap geneInsm1
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563
Downstream geneA230067G21Rik, LOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335I18.bB6Ng01-335I18.g
ACCGA120737GA120738
length3811,115
definitionB6Ng01-335I18.b B6Ng01-335I18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,007,208 - 146,007,594)(146,131,063 - 146,132,199)
sequence
aatatgcttcttcttttccctcagacttcaaaagaccaaatgcactcact
catttgaaagaactgaaagcctgaactgaatgtagcaggcatgttttaat
agaacatgcaacaggacgagcatggtgaagggtgtttaaataaggtaaac
actatggttggtccagctgtttgcttcgttgcacaggccacagcaaaagt
ggatggagtccagaagatcctgagtggaggaaatgcccctgagtgtctgg
agaacacaaggcaggtcaatttctcagaacagagtattggggggggggaa
tcacagagagtagggggtgggagatgatcagaggagccctctctagtgtt
cagcgaggtcttgagccaagcatgtgaataa
gaattcaagggtgtgggtgggcttcaggccatccaggactgagccaacac
tgtgaagagacaatccagatacctctaagtcttatcttggttctgggcac
gtttcagttcggctccaagtccactttgctccaactcagcgatgacagac
atatatttgaactcatttggtctgaagttaaaggtctctactagcccata
gatctccttccgatcggtggcgtagaagagctgaacctgattggcgatgc
actgtgcctccacaacattcagaaatgtggagtccatttctgctgtcatc
agcactatgcccttttcttccttaagttcaggatagtgatataaaatcag
ctggctggctgctgcatcccctcgggtctgaatatttataagtgcagtga
agtggagctctgtacctgtccattgtcctacaaagaactcataaccatcc
cttcttggtagtgcacaaagaaatgttgggcaggactgagccctgttcca
gatcaaatcaaacttctctttaggaataactgcgtagactgtgtcttttg
ctgaaaaatactgctgccaaatctgttttatttcctccgcagttttgtct
ttcaccatctcaacgttgaagactgaactgagagtcttgtccttagtgaa
tcctttgctcacaggctgtttccccaaggcatctgtcttctgctccatac
acttgataaaatcactttgtttggagtgccccactggctgctttcggaac
tcactgcgcttctccaggcgggactcaaaggccgctgggtcagacctgcg
cagctgctggatcttgtcccggtagcggtcgtagaaggggttcgcttcca
gctcgctgaccccactgccgtctgctccctcggggggcaggcccgagccc
cggcgcaccgggaacaccgagactgcatttttttatgtagtttttttttt
tttagagtatttatgtgagtggttctcaagctttggtcatgacttctcaa
agatgaaacaaccctttcacaggtcactaaacattggaacacgatatttt
catagcagtgcaaatttagttatgagcatcagcaaataatgtcacataac
tgaagactgtattta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_146007208_146007594
seq2: B6Ng01-335I18.b_50_436

seq1  GAATTCAATATGCTTCTTCTTTTCCCTCAGACTTCAAAAGACCAAATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATGCTTCTTCTTTTCCCTCAGACTTCAAAAGACCAAATGCA  50

seq1  CTCACTCATTTGAAAGAACTGAAAGCCTGAACTGAATGTAGCAGGCATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCATTTGAAAGAACTGAAAGCCTGAACTGAATGTAGCAGGCATGT  100

seq1  TTTAATAGAACATGCAACAGGACGAGCATGGTGAAGGGTGTTTAAATAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAGAACATGCAACAGGACGAGCATGGTGAAGGGTGTTTAAATAAG  150

seq1  GTAAACACTATGGTTGGTCCAGCTGTTTGCTTCGTTGCACAGGCCACAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACACTATGGTTGGTCCAGCTGTTTGCTTCGTTGCACAGGCCACAGC  200

seq1  AAAAGTGGATGGAGTCCAGAAGATCCTGAGTGGAGGAAATGCCCCTGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGGATGGAGTCCAGAAGATCCTGAGTGGAGGAAATGCCCCTGAGT  250

seq1  GTCTGGAGAACACAAGGCAGGTCAATTTCTCAGAACAGAGTATTGGGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAGAACACAAGGCAGGTCAATTTCTCAGAACAGAGTATTGGGGGG  300

seq1  GGGGAATCACAGAGAGTAGGGGGTGGGAGATGATCAGAGGAGCCCTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATCACAGAGAGTAGGGGGTGGGAGATGATCAGAGGAGCCCTCTCT  350

seq1  AGTGTTCAGCGAGGTCTTGAGCCAAGCATGTGAATAA  387
      |||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCAGCGAGGTCTTGAGCCAAGCATGTGAATAA  387

seq1: chr2_146131063_146132199
seq2: B6Ng01-335I18.g_69_1183 (reverse)

seq1  TAAATACAGTTCCTCATGTTATGGTGACATTATTTTTGCTGATGCTTCAT  50
      ||||||||| || ||| ||||| |||||||||  ||||||||||| ||||
seq2  TAAATACAG-TCTTCA-GTTAT-GTGACATTA--TTTGCTGATGC-TCAT  44

seq1  AACTATAATTTTGCAACTGCTATGAAAATATCCGTGTTTCCCAATGGTTT  100
      |||  ||| ||||| |||||||||||||||| ||||||  ||||||  ||
seq2  AAC--TAAATTTGC-ACTGCTATGAAAATAT-CGTGTT--CCAATG--TT  86

seq1  TAGGTGACCCCTGTGAAAGGGTTGTTTCATCCTTTGAAGAAGTCATGACC  150
      || ||||  ||||||||||||||||||||| ||||| |||||||||||||
seq2  TA-GTGA--CCTGTGAAAGGGTTGTTTCAT-CTTTG-AGAAGTCATGACC  131

seq1  AAAGCTTGAGAACCACTCACATAAAATACTCTTAAAAAAAAAAAAACTAC  200
      |||||||||||||||||||||| |||||||| ||||||||||||||||||
seq2  AAAGCTTGAGAACCACTCACAT-AAATACTC-TAAAAAAAAAAAAACTAC  179

seq1  ATTAAAAAAATGCAGTCTCGGTGTTCCCGGTGCGCCGGGGCTCGGGCCTG  250
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TAAAAAAATGCAGTCTCGGTGTTCCCGGTGCGCCGGGGCTCGGGCCTG  228

seq1  CCCCCCGAGGGAGCAGACGGCAGTGGGGTCAGCGAGCTGGAAGCGAACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCGAGGGAGCAGACGGCAGTGGGGTCAGCGAGCTGGAAGCGAACCC  278

seq1  CTTCTACGACCGCTACCGGGACAAGATCCAGCAGCTGCGCAGGTCTGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACGACCGCTACCGGGACAAGATCCAGCAGCTGCGCAGGTCTGACC  328

seq1  CAGCGGCCTTTGAGTCCCGCCTGGAGAAGCGCAGTGAGTTCCGAAAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGGCCTTTGAGTCCCGCCTGGAGAAGCGCAGTGAGTTCCGAAAGCAG  378

seq1  CCAGTGGGGCACTCCAAACAAAGTGATTTTATCAAGTGTATGGAGCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGGGCACTCCAAACAAAGTGATTTTATCAAGTGTATGGAGCAGAA  428

seq1  GACAGATGCCTTGGGGAAACAGCCTGTGAGCAAAGGATTCACTAAGGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATGCCTTGGGGAAACAGCCTGTGAGCAAAGGATTCACTAAGGACA  478

seq1  AGACTCTCAGTTCAGTCTTCAACGTTGAGATGGTGAAAGACAAAACTGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTCAGTTCAGTCTTCAACGTTGAGATGGTGAAAGACAAAACTGCG  528

seq1  GAGGAAATAAAACAGATTTGGCAGCAGTATTTTTCAGCAAAAGACACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAATAAAACAGATTTGGCAGCAGTATTTTTCAGCAAAAGACACAGT  578

seq1  CTACGCAGTTATTCCTAAAGAGAAGTTTGATTTGATCTGGAACAGGGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGCAGTTATTCCTAAAGAGAAGTTTGATTTGATCTGGAACAGGGCTC  628

seq1  AGTCCTGCCCAACATTTCTTTGTGCACTACCAAGAAGGGATGGTTATGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGCCCAACATTTCTTTGTGCACTACCAAGAAGGGATGGTTATGAG  678

seq1  TTCTTTGTAGGACAATGGACAGGTACAGAGCTCCACTTCACTGCACTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTAGGACAATGGACAGGTACAGAGCTCCACTTCACTGCACTTAT  728

seq1  AAATATTCAGACCCGAGGGGATGCAGCAGCCAGCCAGCTGATTTTATATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTCAGACCCGAGGGGATGCAGCAGCCAGCCAGCTGATTTTATATC  778

seq1  ACTATCCTGAACTTAAGGAAGAAAAGGGCATAGTGCTGATGACAGCAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCCTGAACTTAAGGAAGAAAAGGGCATAGTGCTGATGACAGCAGAA  828

seq1  ATGGACTCCACATTTCTGAATGTTGTGGAGGCACAGTGCATCGCCAATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTCCACATTTCTGAATGTTGTGGAGGCACAGTGCATCGCCAATCA  878

seq1  GGTTCAGCTCTTCTACGCCACCGATCGGAAGGAGATCTATGGGCTAGTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGCTCTTCTACGCCACCGATCGGAAGGAGATCTATGGGCTAGTAG  928

seq1  AGACCTTTAACTTCAGACCAAATGAGTTCAAATATATGTCTGTCATCGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTTAACTTCAGACCAAATGAGTTCAAATATATGTCTGTCATCGCT  978

seq1  GAGTTGGAGCAAAGTGGACTTGGAGCCGAACTGAAACGTGCCCAGAACCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGAGCAAAGTGGACTTGGAGCCGAACTGAAACGTGCCCAGAACCA  1028

seq1  AGATAAGACTTAGAGGTATCTGGATTGTCTCTTCACAGTGTTGGCTCAGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGACTTAGAGGTATCTGGATTGTCTCTTCACAGTGTTGGCTCAGT  1078

seq1  CCTGGATGGCCTGAAGCCCACCCACACCCTTGAATTC  1137
      |||||||||||||||||||||||||||||||||||||
seq2  CCTGGATGGCCTGAAGCCCACCCACACCCTTGAATTC  1115