BAC Information

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BAC

Clone NameB6Ng01-335O12
Chromosome2 (Build37)
Map Location 164,572,500 - 164,705,883
singlet/doubletdoublet
Overlap geneDnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik
Upstream geneAda, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3
Downstream geneZfp335, LOC629777, Mmp9, Slc12a5, Ncoa5, Cd40, Cdh22, Slc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2, Prkcbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335O12.bB6Ng01-335O12.g
ACCGA120987GA120988
length1,0111,093
definitionB6Ng01-335O12.b B6Ng01-335O12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(164,704,883 - 164,705,883)(164,572,500 - 164,573,603)
sequence
ggcagcctgttccacatagtgagttacaggatagccagggctacacagag
accctgtcttttaaaaataagataaactcgcgtagataggtgcagcaggt
ctctggccaaaacgccagctctgaagttggccagacccaagttcaaggcc
gtgctgccgtcctgacacctacgtcagaaccatctgacccctgcaccgta
gtctagcgttctgtggactctcgctgctgctcccattaagtgactgtttt
cacttagcctgtgccttccggacccccacgcataccaaagtcggagaagc
gcagcgtagtctagagacaaacaactgtatctgcgcaagcagcggaactc
ggactagaaaatgcatccgattccgggattggaggaacatgggcgggatc
acataccagagtaccaatcataacgccccggctctggtgggcggagccac
gcaggcgcacagacgggaaccctcccccaccccgctcccagcgcgctccc
gcctgcccctcccgcaagcccagcgggggcgggaagtctggcgcgcgcgc
gccggcccttcgcccgggctccgccccccgccctgccgcgcgctcccgcc
cccgggctgaggcgactctgagtcggagcccgacacaaaggcggtggcga
cggcggcagcggcagcagcgaagggaccctagaggccgctccgcccgggc
tctccgggcccactgcactcaccccagccggcagtcctgctgcccacccg
cggctctaagatggcggcgacgaaagagaccgggcgagcggcagccccga
gcgggaagcgccggaggggcctccgccgtcctgcttcggactcccgggac
ccaggcgcggcacgcagcggggaccgtggcttcctggggctcttacctgc
tcgaagcgggactcgaggggatgcggcctacacgtttctgctcgaccgcc
cggttttgccgccttccgcctcgccctccccatgcgccggctgccgccca
tcttgtgtccc
gaattcaagattacagacatctgttctaatgcagactgagatgtttgtta
acacaagcctttagcttttcttagactctgttttctcagctttgacatgg
ggcatccagcctggggaagggatgggccttgggaattcttcttgtatttt
tgacctgggatagtgataatcatttattaattacaatacttggcagaggc
aggcagacctctgtgagtttaaggccagcctgatctatgtagtgagttcc
aagacaaccagactacatagtgagactctgtctctaaaaaaggaaaagaa
aaaatatgtgtgtattatatttcataaaatacttggaaaataattcctat
ttcacagagttataatgaaataaattttagaatcccatgttgctaactag
ctgagtagtctgggaaggtctgtttggaacactcccctgactctgtctcc
ccaacaaccccagtttcacagacccagccatctctatggatctcctccgt
gctgtcctgcagcctagcatcaatgaggagatccagggtgtcttcaacaa
gtacatgaaggtgaggacctggtgactaaagccaactgtactactaaaca
agactgtacagccaggtgctgcagcgtacgtgcccgaccactcaggaggc
tgaggcagctgacagccagcctggacagcacagtaagaccccttagacaa
gaaaaaacagaatggaggctggaaaatacagcctcagtggttaggggtgc
ttgctgctcctgcacaggactcaattgtagttcctagcactcacatcatg
ccactcccagcctcctgtaactcaggtgcaggctccagtgccctctttct
gacctctgcagattataaccagagtataaattccacaggtatgtacacat
aaatatattttttttaaatcttagaaaaaaacaggcatggtggcatatac
ctttaatcccagcaccagagaaagagcagcagatcttggagttgaggcca
gcctgtctgcagagtgagaccctcttcttgaaaagaaagaaagggacgag
atagaggagaactgcaagcaagatagtctgtcacagtcctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_164704883_164705883
seq2: B6Ng01-335O12.b_61_1071 (reverse)

seq1  GGGACACAAGAT-GGCGGCAG-CGGCGC-TGGGGAGGGCGAGGCGG-AGG  46
      |||||||||||| |||||||| |||||| ||||||||||||||||| |||
seq2  GGGACACAAGATGGGCGGCAGCCGGCGCATGGGGAGGGCGAGGCGGAAGG  50

seq1  CGGCAAAA-CGGGCGGTCGAGCAG-AACGTGT-GGCCGCATCCCCTCGAG  93
      |||||||| ||||||||||||||| ||||||| |||||||||||||||||
seq2  CGGCAAAACCGGGCGGTCGAGCAGAAACGTGTAGGCCGCATCCCCTCGAG  100

seq1  T-CCGCTTCGGGCAGGTAAGAGCCCCAGGAAGCCACGGT-CCCGCTGCGT  141
      | |||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  TCCCGCTTCGAGCAGGTAAGAGCCCCAGGAAGCCACGGTCCCCGCTGCGT  150

seq1  GCCGCGCCTGGGT-CCGGGAGTCCGAAGCAGGACGGCGGAGGCCCCTCCG  190
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCCGCGCCTGGGTCCCGGGAGTCCGAAGCAGGACGGCGGAGGCCCCTCCG  200

seq1  GCGCTTCCCGCTCGGGGCTGCCGCTCGCCCGGTCTCTTTCGTCGCCGCCA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTTCCCGCTCGGGGCTGCCGCTCGCCCGGTCTCTTTCGTCGCCGCCA  250

seq1  TCTTAGAGCCGCGGGTGGGCAGCAGGACTGCCGGCTGGGGTGAGTGCAGT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAGCCGCGGGTGGGCAGCAGGACTGCCGGCTGGGGTGAGTGCAGT  300

seq1  GGGCCCGGAGAGCCCGGGCGGAGCGGCCTCTAGGGTCCCTTCGCTGCTGC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCGGAGAGCCCGGGCGGAGCGGCCTCTAGGGTCCCTTCGCTGCTGC  350

seq1  CGCTGCCGCCGTCGCCACCGCCTTTGTGTCGGGCTCCGACTCAGAGTCGC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCCGCCGTCGCCACCGCCTTTGTGTCGGGCTCCGACTCAGAGTCGC  400

seq1  CTCAGCCCGGGGGCGGGAGCGCGCGGCAGGGCGGGGGGCGGAGCCCGGGC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCCGGGGGCGGGAGCGCGCGGCAGGGCGGGGGGCGGAGCCCGGGC  450

seq1  GAAGGGCCGGCGCGCGCGCGCCAGACTTCCCGCCCCCGCTGGGCTTGCGG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCCGGCGCGCGCGCGCCAGACTTCCCGCCCCCGCTGGGCTTGCGG  500

seq1  GAGGGGCAGGCGGGAGCGCGCTGGGAGCGGGGTGGGGGAGGGTTCCCGTC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGCAGGCGGGAGCGCGCTGGGAGCGGGGTGGGGGAGGGTTCCCGTC  550

seq1  TGTGCGCCTGCGTGGCTCCGCCCACCAGAGCCGGGGCGTTATGATTGGTA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGCCTGCGTGGCTCCGCCCACCAGAGCCGGGGCGTTATGATTGGTA  600

seq1  CTCTGGTATGTGATCCCGCCCATGTTCCTCCAATCCCGGAATCGGATGCA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTATGTGATCCCGCCCATGTTCCTCCAATCCCGGAATCGGATGCA  650

seq1  TTTTCTAGTCCGAGTTCCGCTGCTTGCGCAGATACAGTTGTTTGTCTCTA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGTCCGAGTTCCGCTGCTTGCGCAGATACAGTTGTTTGTCTCTA  700

seq1  GACTACGCTGCGCTTCTCCGACTTTGGTATGCGTGGGGGTCCGGAAGGCA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACGCTGCGCTTCTCCGACTTTGGTATGCGTGGGGGTCCGGAAGGCA  750

seq1  CAGGCTAAGTGAAAACAGTCACTTAATGGGAGCAGCAGCGAGAGTCCACA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAAGTGAAAACAGTCACTTAATGGGAGCAGCAGCGAGAGTCCACA  800

seq1  GAACGCTAGACTACGGTGCAGGGGTCAGATGGTTCTGACGTAGGTGTCAG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGCTAGACTACGGTGCAGGGGTCAGATGGTTCTGACGTAGGTGTCAG  850

seq1  GACGGCAGCACGGCCTTGAACTTGGGTCTGGCCAACTTCAGAGCTGGCGT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGCAGCACGGCCTTGAACTTGGGTCTGGCCAACTTCAGAGCTGGCGT  900

seq1  TTTGGCCAGAGACCTGCTGCACCTATCTACGCGAGTTTATCTTATTTTTA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCAGAGACCTGCTGCACCTATCTACGCGAGTTTATCTTATTTTTA  950

seq1  AAAGACAGGGTCTCTGTGTAGCCCTGGCTATCCTGTAACTCACTATGTGG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAGGGTCTCTGTGTAGCCCTGGCTATCCTGTAACTCACTATGTGG  1000

seq1  AACAGGCTGCC  1001
      |||||||||||
seq2  AACAGGCTGCC  1011

seq1: chr2_164572500_164573603
seq2: B6Ng01-335O12.g_69_1161

seq1  GAATTCAAGATTACAGACATCTGTTCTAATGCAGACTGAGATGTTTGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGATTACAGACATCTGTTCTAATGCAGACTGAGATGTTTGTTA  50

seq1  ACACAAGCCTTTAGCTTTTCTTAGACTCTGTTTTCTCAGCTTTGACATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGCCTTTAGCTTTTCTTAGACTCTGTTTTCTCAGCTTTGACATGG  100

seq1  GGCATCCAGCCTGGGGAAGGGATGGGCCTTGGGAATTCTTCTTGTATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCAGCCTGGGGAAGGGATGGGCCTTGGGAATTCTTCTTGTATTTT  150

seq1  TGACCTGGGATAGTGATAATCATTTATTAATTACAATACTTGGCAGAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGGGATAGTGATAATCATTTATTAATTACAATACTTGGCAGAGGC  200

seq1  AGGCAGACCTCTGTGAGTTTAAGGCCAGCCTGATCTATGTAGTGAGTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGACCTCTGTGAGTTTAAGGCCAGCCTGATCTATGTAGTGAGTTCC  250

seq1  AAGACAACCAGACTACATAGTGAGACTCTGTCTCTAAAAAAGGAAAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAACCAGACTACATAGTGAGACTCTGTCTCTAAAAAAGGAAAAGAA  300

seq1  AAAATATGTGTGTATTATATTTCATAAAATACTTGGAAAATAATTCCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGTGTGTATTATATTTCATAAAATACTTGGAAAATAATTCCTAT  350

seq1  TTCACAGAGTTATAATGAAATAAATTTTAGAATCCCATGTTGCTAACTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGAGTTATAATGAAATAAATTTTAGAATCCCATGTTGCTAACTAG  400

seq1  CTGAGTAGTCTGGGAAGGTCTGTTTGGAACACTCCCCTGACTCTGTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTAGTCTGGGAAGGTCTGTTTGGAACACTCCCCTGACTCTGTCTCC  450

seq1  CCAACAACCCCAGTTTCACAGACCCAGCCATCTCTATGGATCTCCTCCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAACCCCAGTTTCACAGACCCAGCCATCTCTATGGATCTCCTCCGT  500

seq1  GCTGTCCTGCAGCCTAGCATCAATGAGGAGATCCAGGGTGTCTTCAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTGCAGCCTAGCATCAATGAGGAGATCCAGGGTGTCTTCAACAA  550

seq1  GTACATGAAGGTGAGGACCTGGTGACTAAAGCCAACTGTACTACTAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGAAGGTGAGGACCTGGTGACTAAAGCCAACTGTACTACTAAACA  600

seq1  AGACTGTACAGCCAGGTGCTGCAGCGTACGTGCCCGACCACTCAGGAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTACAGCCAGGTGCTGCAGCGTACGTGCCCGACCACTCAGGAGGC  650

seq1  TGAGGCAGCTGACAGCCAGCCTGGACAGCACAGTAAGACCCCTTAGACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAGCTGACAGCCAGCCTGGACAGCACAGTAAGACCCCTTAGACAA  700

seq1  GAAAAAACAGAATGGAGGCTGGAAAATACAGCCTCAGTGGTTAGGGGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAACAGAATGGAGGCTGGAAAATACAGCCTCAGTGGTTAGGGGTGC  750

seq1  TTGCTGCTCCTGCACAGGACTCAATTGTAGTTCCTAGCACTCACATCAGG  800
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTGCTGCTCCTGCACAGGACTCAATTGTAGTTCCTAGCACTCACATCATG  800

seq1  CCACTCCCAGCCTCCTGTAACTCAGGTGCAGGCTCCAGTGCCCTC-TTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCACTCCCAGCCTCCTGTAACTCAGGTGCAGGCTCCAGTGCCCTCTTTCT  850

seq1  GACCTCTGCAGATTATAACCAGAGTATAAATTCCACAGGTATGTACACAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTGCAGATTATAACCAGAGTATAAATTCCACAGGTATGTACACAT  900

seq1  AAATATATTTTTTTTAAATCTTAGAAAAAAACAGGCATGGTGGCATATAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTTTTTTTAAATCTTAGAAAAAAACAGGCATGGTGGCATATAC  950

seq1  CTTTAATCCCAGCACCCAGGAGAAAGAAGCAAGCAGATCTTTGGAGTTTG  999
      ||||||||||||||||   ||||||| ||| |||||||| |||||| |||
seq2  CTTTAATCCCAGCACC--AGAGAAAG-AGC-AGCAGATC-TTGGAG-TTG  994

seq1  AGGCCAGCCTGGTCTGCAGAGTGAGACCCTCT--CTGAAAAGAAAGGAAA  1047
      |||||||||| |||||||||||||||||||||   |||||||||||  ||
seq2  AGGCCAGCCT-GTCTGCAGAGTGAGACCCTCTTCTTGAAAAGAAAG--AA  1041

seq1  GGGGAGGGAGGATAGAGGAGACTTGCAAGCAGGATAGTCCTGTCAACAGT  1097
       |||| |   |||||||||||  |||||||| |||||| ||||| |||||
seq2  AGGGACG--AGATAGAGGAGAACTGCAAGCAAGATAGT-CTGTC-ACAGT  1087

seq1  CTCTCTT  1104
      | |||||
seq2  C-CTCTT  1093