BAC Information

Click to search

BAC

Clone NameB6Ng01-336C06
Chromosome2 (Build37)
Map Location 15,658,326 - 15,659,490
singlet/doubletsinglet
Overlap genenone
Upstream geneCacnb2, LOC100041220, Nsun6, Arl5b, LOC633061, LOC667329, LOC227588
Downstream geneLOC625457, Plxdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336C06.bB6Ng01-336C06.g
ACCGA121155GA121156
length1,2261,147
definitionB6Ng01-336C06.b B6Ng01-336C06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgctaactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattccacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaaacc
tgataaacggattcggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaacaacatccttctcaatagtcacaaataatataaaatatctcggcg
tgactctaaggaagtgaaagatctgtatgataaaaacttcaagactctga
agaaagaaattaaggaagatctcagaagatggaaagatctcccatgctca
tggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaat
ctacagattcaatgcaatccctatcaaaattccaaatcaattcttcaacg
aattagaaagagcaatttgcaaattcatctggaataacaaaaaacctaga
atagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccat
gcctgacctaaatttttactacagagcaattgtgataaaaactgcatggt
actggtatactgacagacaagtagaccaatggaatagaattgaagaccca
gaaatgaacccacacacctatagtcacttgatcttcgacaagggagctaa
aaccatccagtggaagaagacagcattttcaacaattggtgctggcacaa
ctggttgttatcatgtagaagaatgcgaattgatccatacttatctcctt
gtactaagtcaaatctaagtggatcaaggaacttcacataaaaccagaga
cactgaaacttatagaggagaaagtggggaaagccttgagatatggcaac
aggggaaaatctgaacagcacagcaatggcttgttctgtagatcagattg
acaaatgggacctaatgactcaaagttctgcagccaagaatcaatcatta
gagaaaaagaccctccaccagaatgt
gaattcatacaaagcatatttgactgctgggtacaatgaagcatttaatt
gaaaaaagcctggtcgatagtaggaaaagaaatgaaaaggaggattagag
ctattgactgaaaagttcagaaagttgtgtttttattattaagaatgaca
taatgagatatataatctcaacagaatataatgtactattgtttaaatga
ttttcacataaattctagaactgaattctcctttaacaagcaggcatttt
tagttaattaaatgtgctctttgacaatctcatacatgtattcaaggcac
actgattattcttccatcccactctcttctgtcttccctccatccctacc
atctcctccccccttaaagttatttttccaaattatctttaaatatgatt
tttttttcaatcagcagattacaattaaagctaatatttaaagaaaagtg
agtggaattatagtttattgttatgaatatacaataagtctttttactat
aatacttacatattttcaatgtccttgtataggaaccatcttactaccat
ttgtgatggtttgaatgacaatgttcctatagctccaatgtttgaatact
tggtccccagtatttgaaataggttgaggtggtatgtggccttcctgaag
gatacatattgctggggacagggtttaggatgtaaaagtctcttgccatt
accagtgtgttgtctgatttctgcttatactttaagatgggagctgtcag
cttccttctccagtctccatggctactttgcttctctatgccagcaggct
ggtacgctatcccactatgttggtgatggactctttatcctctaaaacca
taagacccaaataaaaccttcattctgtaagttatgttgtcattgtattt
cctcaaagcaatagaaaagtgactaacaaacctttctgcttagcaattga
aagggacacagactcaagtgcagaaaatagagtattgtaaatcatcttta
ctctgtgaagagataccgtgacatggcactctcataggaaacattcgata
ggctgctacagtttagaggtttagtttattatcaccatggaacatgtgca
tgcaggaaagaacattgtgcctgatagcaggttctgcatcttgatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_15658326_15659490
seq2: B6Ng01-336C06.g_67_1213 (reverse)

seq1  GGATCAAGATGCAGAACTCTTGGCTACTCAAGCACAATGT--CTTCCTGC  48
      ||||||||||||||||| ||  |||| ||| |||||||||   |||||||
seq2  GGATCAAGATGCAGAAC-CT--GCTA-TCAGGCACAATGTTCTTTCCTGC  46

seq1  ATGCCACCATGTTTCCATGGTGATAATAAACTAAACCTCTAAACTGTAAG  98
      ||||   |||| ||||||||||||||||||||||||||||||||||||  
seq2  ATGC--ACATG-TTCCATGGTGATAATAAACTAAACCTCTAAACTGTA--  91

seq1  GCAGCCCTAATCGAATGTTTCCTTATGAGAGTTGCCATGGTCACGGTATC  148
      ||||||   ||||||||||||| |||||||| |||||| |||||||||||
seq2  GCAGCC--TATCGAATGTTTCC-TATGAGAG-TGCCAT-GTCACGGTATC  136

seq1  TCTTCACAGAGTAAAGAATGATTTACAATTACTTCCTATTTTTCTGCACT  198
      |||||||||||||||| ||||||||||| ||||  ||| |||||||||||
seq2  TCTTCACAGAGTAAAG-ATGATTTACAA-TACT--CTA-TTTTCTGCACT  181

seq1  TGAGTCTGTGTTCCTTTTCAATTGCTAAGCAGAAAGGTTTGTTAGTCACT  248
      |||||||||| ||| |||||||||||||||||||||||||||||||||||
seq2  TGAGTCTGTG-TCCCTTTCAATTGCTAAGCAGAAAGGTTTGTTAGTCACT  230

seq1  TTTCTATTGCTTTGAGGAAATACAATGACAACATAACTTACAGAATGAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTGCTTTGAGGAAATACAATGACAACATAACTTACAGAATGAAG  280

seq1  GTTTTATTTGGGTCTTATGGTTTTAGAGGATAAAGAGTCCATCACCAACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTTGGGTCTTATGGTTTTAGAGGATAAAGAGTCCATCACCAACA  330

seq1  TAGTGGGATAGCGTACCAGCCTGCTGGCATAGAGAAGCAAAGTAGCCATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGGATAGCGTACCAGCCTGCTGGCATAGAGAAGCAAAGTAGCCATG  380

seq1  GAGACTGGAGAAGGAAGCTGACAGCTCCCATCTTAAAGTATAAGCAGAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGGAGAAGGAAGCTGACAGCTCCCATCTTAAAGTATAAGCAGAAA  430

seq1  TCAGACAACACACTGGTAATGGCAAGAGACTTTTACATCCTAAACCCTGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAACACACTGGTAATGGCAAGAGACTTTTACATCCTAAACCCTGT  480

seq1  CCCCAGCAATATGTATCCTTCAGGAAGGCCACATACCACCTCAACCTATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCAATATGTATCCTTCAGGAAGGCCACATACCACCTCAACCTATT  530

seq1  TCAAATACTGGGGACCAAGTATTCAAACATTGGAGCTATAGGAACATTGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATACTGGGGACCAAGTATTCAAACATTGGAGCTATAGGAACATTGT  580

seq1  CATTCAAACCATCACAAATGGTAGTAAGATGGTTCCTATACAAGGACATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAACCATCACAAATGGTAGTAAGATGGTTCCTATACAAGGACATT  630

seq1  GAAAATATGTAAGTATTATAGTAAAAAGACTTATTGTATATTCATAACAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATGTAAGTATTATAGTAAAAAGACTTATTGTATATTCATAACAA  680

seq1  TAAACTATAATTCCACTCACTTTTCTTTAAATATTAGCTTTAATTGTAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTATAATTCCACTCACTTTTCTTTAAATATTAGCTTTAATTGTAAT  730

seq1  CTGCTGATTGAAAAAAAAATCATATTTAAAGATAATTTGGAAAAATAACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGATTGAAAAAAAAATCATATTTAAAGATAATTTGGAAAAATAACT  780

seq1  TTAAGGGGGGAGGAGATGGTAGGGATGGAGGGAAGACAGAAGAGAGTGGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGGGGAGGAGATGGTAGGGATGGAGGGAAGACAGAAGAGAGTGGG  830

seq1  ATGGAAGAATAATCAGTGTGCCTTGAATACATGTATGAGATTGTCAAAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGAATAATCAGTGTGCCTTGAATACATGTATGAGATTGTCAAAGA  880

seq1  GCACATTTAATTAACTAAAAATGCCTGCTTGTTAAAGGAGAATTCAGTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTTAATTAACTAAAAATGCCTGCTTGTTAAAGGAGAATTCAGTTC  930

seq1  TAGAATTTATGTGAAAATCATTTAAACAATAGTACATTATATTCTGTTGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTTATGTGAAAATCATTTAAACAATAGTACATTATATTCTGTTGA  980

seq1  GATTATATATCTCATTATGTCATTCTTAATAATAAAAACACAACTTTCTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATATATCTCATTATGTCATTCTTAATAATAAAAACACAACTTTCTG  1030

seq1  AACTTTTCAGTCAATAGCTCTAATCCTCCTTTTCATTTCTTTTCCTACTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTCAGTCAATAGCTCTAATCCTCCTTTTCATTTCTTTTCCTACTA  1080

seq1  TCGACCAGGCTTTTTTCAATTAAATGCTTCATTGTACCCAGCAGTCAAAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACCAGGCTTTTTTCAATTAAATGCTTCATTGTACCCAGCAGTCAAAT  1130

seq1  ATGCTTTGTATGAATTC  1165
      |||||||||||||||||
seq2  ATGCTTTGTATGAATTC  1147