BAC Information

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BAC

Clone NameB6Ng01-336M03
Chromosome2 (Build37)
Map Location 74,818,801 - 74,956,735
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667729, LOC100040172, Lnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817
Downstream geneA330043C09Rik, LOC667739, LOC545423, LOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336M03.bB6Ng01-336M03.g
ACCGA121583GA121584
length1,2471,160
definitionB6Ng01-336M03.b B6Ng01-336M03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,955,505 - 74,956,735)(74,818,801 - 74,819,972)
sequence
gaattcacaccgggaaagggaatagctgaaaggattcctgtctggtcttt
ggacaaaacttgcaaggaaagagcccagcttcctaagactgtgagcttgt
ctgcgcaggcgcagtagtcaggtggcattggttagggcgctgggctgaga
gcagctgagtgtgatggatggctctgtgtgctgtttatctagtgcagttt
ggtatttcacctctgttttcattagactgatggtaaggtaataattcttt
cctctagctgagaaatctgtcttcagccatttgttgatcttcttgaacgg
gcactgcaggtgcacagaagtcaccctaaaggagattttgaatgaaatct
taaataatgctggacggcatggtggagcgccagcagcacagaagtcccct
agattttcttcgtgcttattagctacgtgggatcacattgacccaaggaa
aaaaacaaaggaatggcacaaggtagaagaccttgtgacagtcacacgtt
tattactctggaaaaattcaagcctcggtggtaagaggcatccaaacagt
gcctttttagtgagaagtttctgtgaagcagggtggtacagtgggaaatg
ccacaggctatcttgagtagttccaccatgactaaccctctgggacacat
ctcttcacggctcggaaccacactttctccatctctcgggtgaagataat
aatacatgcacgagttttaattggaagcactgatcaagagaacaaagcta
ttaggctttctctaaggcgagtaggaacaactgagaaccacgaagcacgt
gcctttaatgagctgtagcttcttattgtctccttccagcttttgtgatg
gaaagctcagaaggacggaggaaggtgttggctcattaaacattggtcca
ggaaggaatctttcccacaacagaggaggcaagccatctaagctgatttc
tggacggaagagctagcaatcaagtgaaagaacttcacatacagggctca
tgcagtgtgcgattcaacctggagaaagatgctgggaaggtctctacttc
cctaaggctaagataagaatattaagaatggttggaccctaatccttgaa
cttctttgaatgaagttcaaggtcttcgcttctcatccattccgtcttgt
tcagtcatctgccgtcattcaatcgtttctgtaacattagcttcctggct
ggcaaggttcctctattaatataaccagggggtgacacagaggtgtc
gaattcaaggccttattattattctgactaaccaggagatgagtcgggct
tagagtcagatttgtttttgtgttaataatgcatttgtattacccttcct
tgcaggccccgtctccactcttgctatcttcagtgtgagtttgcacttgt
caaaatgaataataagcagcatcaattccaaccccacttttccagtgtgt
tcagccgtaatagtctcactccgccttgattctgttgattgctattaaat
cctggattgctttaaattctgtgagatagtcttcaaagtatcacttataa
attgtgtgcatttattacaatctctcttagaacaaagggtattagctcct
ggaaaaacactgccttctcttctgcactccagcgaggttacagaaatggg
ttctatctttttagaaattagtggtttaaaatgaaagtaagtgctcatgc
ttgtgggagggttttgttttgttttctttcttttctctacaccacctttc
ataatctaacctgaacatattttagtaaaaaaaatcaaaatgtattatat
ccaagatgcacagaaagggattttttttttcagagaggctattgcaaaga
gcaagtctgttatttttcttctatttaaaatatcacatctacttcagata
gaacctatgcaaggtgtgcttaagtcagtcgagtgatgaagggaagcagt
gattgccaggcactggctatgcacggctggagggcagctgggtcctgggt
gtgggcagacagcagacaccttcttagatggcttgtgagtgagaaagaga
gggacagtgattggctgagtgcctagtagggtctgaatgagacgcagggt
tgccttggtgctgacaggctttacattttagtgtccttcatttgcaaggg
ttccttccaagaccccaggcaagacagaagtaatgtgttcacgtattagt
aaggttggaaacgttggagttggtcaaggtcaggtttatgttcaatttct
cttgtttctattcctaatattgggtagtaggagcttggaatgggccacta
gtattggggggatctagttagcaaacacagtgaaacatgtttatcgtgtt
ttcctgaattatttacatggtgcccaggcactcatgcttagaattctggc
tgaccatgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_74955505_74956735
seq2: B6Ng01-336M03.b_48_1294 (reverse)

seq1  GACACCT---GGTCA-CCCCTGGTTATATTTAATGAGGACCCTTTCCCAG  46
      |||||||    |||| |||||||||||||| |  ||||| || || ||||
seq2  GACACCTCTGTGTCACCCCCTGGTTATATTAATAGAGGAACC-TTGCCAG  49

seq1  GCAAGAGAGCT-ATAGTACAGAAACGATGGATGGACGGCAGATGGACTGA  95
       || || |||| ||  |||||||||||| ||  |||||||||| ||||||
seq2  CCAGGA-AGCTAATGTTACAGAAACGATTGAATGACGGCAGAT-GACTGA  97

seq1  --CAGACGG-ATGGATGAGAAGCGAAGAACTTGA--CTCA-TCAAAGAAG  139
         |||||| |||||||||||||||||| |||||   ||| |||||||||
seq2  ACAAGACGGAATGGATGAGAAGCGAAGACCTTGAACTTCATTCAAAGAAG  147

seq1  TTCCAGGAATTAGGTCCAACCAT--CTAATA-TCTTATCTTAGCC-TAGG  185
      ||| |||| |  |||||||||||   ||||| ||||||||||||| ||||
seq2  TTCAAGGATTAGGGTCCAACCATTCTTAATATTCTTATCTTAGCCTTAGG  197

seq1  G-AGTAGAGACCTT-CCAGCATC-TTCTCCAGG-TGAATCGCACACTGCA  231
      | |||||||||||| |||||||| ||||||||| ||||||||||||||||
seq2  GAAGTAGAGACCTTCCCAGCATCTTTCTCCAGGTTGAATCGCACACTGCA  247

seq1  TGAGCCCTGTATGTGAAGTTCTATCACCTGATTGCTAGCTCTTCCGTCCA  281
      |||||||||||||||||||||| |||| ||||||||||||||||||||||
seq2  TGAGCCCTGTATGTGAAGTTCTTTCACTTGATTGCTAGCTCTTCCGTCCA  297

seq1  GAAATCAGCTTAGATGGCTTGCCTCCTCTGTTGTGGGAAAGATTCCTTCC  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAGCTTAGATGGCTTGCCTCCTCTGTTGTGGGAAAGATTCCTTCC  347

seq1  TGGACCAATGTTTAATGAGCCAACACCTTCCTCCGTCCTTCTGAGCTTTC  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCAATGTTTAATGAGCCAACACCTTCCTCCGTCCTTCTGAGCTTTC  397

seq1  CATCACAAAAGCTGGAAGGAGACAATAAGAAGCTACAGCTCATTAAAGGC  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACAAAAGCTGGAAGGAGACAATAAGAAGCTACAGCTCATTAAAGGC  447

seq1  ACGTGCTTCGTGGTTCTCAGTTGTTCCTACTCGCCTTAGAGAAAGCCTAA  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGCTTCGTGGTTCTCAGTTGTTCCTACTCGCCTTAGAGAAAGCCTAA  497

seq1  TAGCTTTGTTCTCTTGATCAGTGCTTCCAATTAAAACTCGTGCATGTATT  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTGTTCTCTTGATCAGTGCTTCCAATTAAAACTCGTGCATGTATT  547

seq1  ATTATCTTCACCCGAGAGATGGAGAAAGTGTGGTTCCGAGCCGTGAAGAG  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTTCACCCGAGAGATGGAGAAAGTGTGGTTCCGAGCCGTGAAGAG  597

seq1  ATGTGTCCCAGAGGGTTAGTCATGGTGGAACTACTCAAGATAGCCTGTGG  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCCCAGAGGGTTAGTCATGGTGGAACTACTCAAGATAGCCTGTGG  647

seq1  CATTTCCCACTGTACCACCCTGCTTCACAGAAACTTCTCACTAAAAAGGC  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCCACTGTACCACCCTGCTTCACAGAAACTTCTCACTAAAAAGGC  697

seq1  ACTGTTTGGATGCCTCTTACCACCGAGGCTTGAATTTTTCCAGAGTAATA  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTGGATGCCTCTTACCACCGAGGCTTGAATTTTTCCAGAGTAATA  747

seq1  AACGTGTGACTGTCACAAGGTCTTCTACCTTGTGCCATTCCTTTGTTTTT  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGTGACTGTCACAAGGTCTTCTACCTTGTGCCATTCCTTTGTTTTT  797

seq1  TTCCTTGGGTCAATGTGATCCCACGTAGCTAATAAGCACGAAGAAAATCT  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGGGTCAATGTGATCCCACGTAGCTAATAAGCACGAAGAAAATCT  847

seq1  AGGGGACTTCTGTGCTGCTGGCGCTCCACCATGCCGTCCAGCATTATTTA  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACTTCTGTGCTGCTGGCGCTCCACCATGCCGTCCAGCATTATTTA  897

seq1  AGATTTCATTCAAAATCTCCTTTAGGGTGACTTCTGTGCACCTGCAGTGC  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCATTCAAAATCTCCTTTAGGGTGACTTCTGTGCACCTGCAGTGC  947

seq1  CCGTTCAAGAAGATCAACAAATGGCTGAAGACAGATTTCTCAGCTAGAGG  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTCAAGAAGATCAACAAATGGCTGAAGACAGATTTCTCAGCTAGAGG  997

seq1  AAAGAATTATTACCTTACCATCAGTCTAATGAAAACAGAGGTGAAATACC  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTATTACCTTACCATCAGTCTAATGAAAACAGAGGTGAAATACC  1047

seq1  AAACTGCACTAGATAAACAGCACACAGAGCCATCCATCACACTCAGCTGC  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCACTAGATAAACAGCACACAGAGCCATCCATCACACTCAGCTGC  1097

seq1  TCTCAGCCCAGCGCCCTAACCAATGCCACCTGACTACTGCGCCTGCGCAG  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCCCAGCGCCCTAACCAATGCCACCTGACTACTGCGCCTGCGCAG  1147

seq1  ACAAGCTCACAGTCTTAGGAAGCTGGGCTCTTTCCTTGCAAGTTTTGTCC  1181
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTCACAGTCTTAGGAAGCTGGGCTCTTTCCTTGCAAGTTTTGTCC  1197

seq1  AAAGACCAGACAGGAATCCTTTCAGCTATTCCCTTTCCCGGTGTGAATTC  1231
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCAGACAGGAATCCTTTCAGCTATTCCCTTTCCCGGTGTGAATTC  1247

seq1: chr2_74818801_74819972
seq2: B6Ng01-336M03.g_67_1226

seq1  GAATTCAAGGCCTTATTATTATTCTGACTAACCAGGAGATGAGTCGGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCTTATTATTATTCTGACTAACCAGGAGATGAGTCGGGCT  50

seq1  TAGAGTCAGATTTGTTTTTGTGTTAATAATGCATTTGTATTACCCTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCAGATTTGTTTTTGTGTTAATAATGCATTTGTATTACCCTTCCT  100

seq1  TGCAGGCCCCGTCTCCACTCTTGCTATCTTCAGTGTGAGTTTGCACTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCCCCGTCTCCACTCTTGCTATCTTCAGTGTGAGTTTGCACTTGT  150

seq1  CAAAATGAATAATAAGCAGCATCAATTCCAACCCCACTTTTCCAGTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGAATAATAAGCAGCATCAATTCCAACCCCACTTTTCCAGTGTGT  200

seq1  TCAGCCGTAATAGTCTCACTCCGCCTTGATTCTGTTGATTGCTATTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCGTAATAGTCTCACTCCGCCTTGATTCTGTTGATTGCTATTAAAT  250

seq1  CCTGGATTGCTTTAAATTCTGTGAGATAGTCTTCAAAGTATCACTTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATTGCTTTAAATTCTGTGAGATAGTCTTCAAAGTATCACTTATAA  300

seq1  ATTGTGTGCATTTATTACAATCTCTCTTAGAACAAAGGGTATTAGCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTGCATTTATTACAATCTCTCTTAGAACAAAGGGTATTAGCTCCT  350

seq1  GGAAAAACACTGCCTTCTCTTCTGCACTCCAGCGAGGTTACAGAAATGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAACACTGCCTTCTCTTCTGCACTCCAGCGAGGTTACAGAAATGGG  400

seq1  TTCTATCTTTTTAGAAATTAGTGGTTTAAAATGAAAGTAAGTGCTCATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCTTTTTAGAAATTAGTGGTTTAAAATGAAAGTAAGTGCTCATGC  450

seq1  TTGTGGGAGGGTTTTGTTTTGTTTTCTTTCTTTTCTCTACACCACCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGAGGGTTTTGTTTTGTTTTCTTTCTTTTCTCTACACCACCTTTC  500

seq1  ATAATCTAACCTGAACATATTTTAGTAAAAAAAATCAAAATGTATTATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTAACCTGAACATATTTTAGTAAAAAAAATCAAAATGTATTATAT  550

seq1  CCAAGATGCACAGAAAGGGATTTTTTTTTTCAGAGAGGCTATTGCAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATGCACAGAAAGGGATTTTTTTTTTCAGAGAGGCTATTGCAAAGA  600

seq1  GCAAGTCTGTTATTTTTCTTCTATTTAAAATATCACATCTACTTCAGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTCTGTTATTTTTCTTCTATTTAAAATATCACATCTACTTCAGATA  650

seq1  GAACCTATGCAAGGTGTGCTTAAGTCAGTCGAGTGATGAAGGGAAGCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTATGCAAGGTGTGCTTAAGTCAGTCGAGTGATGAAGGGAAGCAGT  700

seq1  GATTGCCAGGCACTGGCTATGCACGGCTGGAGGGCAGCTGGGTCCTGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCAGGCACTGGCTATGCACGGCTGGAGGGCAGCTGGGTCCTGGGT  750

seq1  GTGGGCAGACAGCAGACACCTTCTTAGATGGCTTGTGAGTGAGAAAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCAGACAGCAGACACCTTCTTAGATGGCTTGTGAGTGAGAAAGAGA  800

seq1  GGGACAGTGATTGGCTGAGTGCCTAGTAGGGTCTGAATGAGACGCAGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGTGATTGGCTGAGTGCCTAGTAGGGTCTGAATGAGACGCAGGGT  850

seq1  TGCCTTGGTGCTGACAGGCTTTACATTTTAGTGTCCTTCATTTGCAAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGGTGCTGACAGGCTTTACATTTTAGTGTCCTTCATTTGCAAGGG  900

seq1  TTCCTTCCAAGACCCCAGGCAAGACAGAAGTAATGTGTTCACGTATTAGG  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTCCTTCCAAGACCCCAGGCAAGACAGAAGTAATGTGTTCACGTATTA-G  949

seq1  TAAGGTTGGAAACGTTGGAGGTTGGTCAAGGTCAAGGTTTATGTTCAATT  1000
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  TAAGGTTGGAAACGTTGGA-GTTGGTCAAGGTC-AGGTTTATGTTCAATT  997

seq1  TCTCTTGTTTCTATTCCTAATATTGGGTAGTAGGAGCTTGGAAT-GGCCA  1049
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTCTTGTTTCTATTCCTAATATTGGGTAGTAGGAGCTTGGAATGGGCCA  1047

seq1  CTAGTATTTGGGGGGATCTAGTTAAGGCAACACAGGTTGAAACAATGTTT  1099
      |||||| |||||||||||||||| ||  |||||||  |||||| ||||||
seq2  CTAGTA-TTGGGGGGATCTAGTT-AGCAAACACAG--TGAAAC-ATGTTT  1092

seq1  AGTCGTGGTTTCCTGAGATATATTTACATGGTGCCCAGGCACCCTCCATG  1149
      | ||||| |||||||| || ||||||||||||||||||||||    ||||
seq2  A-TCGTGTTTTCCTGA-AT-TATTTACATGGTGCCCAGGCAC---TCATG  1136

seq1  CTTAG-ATTCTTGCTAGCCATGCC  1172
      ||||| ||||| |||  |||||||
seq2  CTTAGAATTCTGGCTGACCATGCC  1160