BAC Information

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BAC

Clone NameB6Ng01-337E01
Chromosome2 (Build37)
Map Location 181,665,504 - 181,665,977
singlet/doubletsinglet
Overlap genenone
Upstream geneBirc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881
Downstream geneLOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337E01.bB6Ng01-337E01.g
ACCGA121934GA121935
length1,194363
definitionB6Ng01-337E01.b B6Ng01-337E01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggccaccatggccatggtcggcaaagtgagttccagaacagc
cagggctatagggagaaaccctgtctggaaaaaaaaaaaacaaaataaat
aaaataaaataaaataaaataaaataaaataaaataaaataagaaataga
aatgaaaaagaattagaaaaaagattacagaaataaaacataagcccact
agattgcaggttaccccaatcacagcagaagtatcaaacacacacacaca
cacacacacacacacacacacacatgcacacacactctgtcataaaatcc
aatgtgccaggacagccagggctatacagagaaaccctgtctcgaaaaac
caaaacaagcaaaaaaacaaaaaacaaaaatccaatgtgccttcatgatc
aaaattcgatagtcaatagtactagaagaatcatatgtctgaaaatcctt
ccttccttcctttctttctttctttctttctttctttctttctttctttc
tttctccctttctttctttctttctttctttctttctttctttctttctt
tctttcttattacaaatagttttcaatgtaagtgtgtgtttgtgctttat
ctgctgcgtatatacctgcatgccaggagagggcaacagaacctaggaga
aaccaccatgcagctcctgagaataaatgaaaaaacaacaaaaaaggaaa
ttctaatcacatagaatgtagatatatgcaaggctgtcagagtgcttttt
aaggcttagtgtaagtaatgaaaattgttgtgtgtcttttatccaaacac
agaaaggcagatggttcgcctgcatgtctgttgtctgcatgtctacttcc
ttgttctgtcactcggttgcactttgacctcaccaagctgaaagacaaca
tgtgcatggcagccatcttgtctgctaactgaactcccgcacaacaagat
ggaggtggctgggccttcatgtgacctattgttcagtcgctttgtttctc
ccttccaccgggttttagtggcccgtttgcaagtgcagaattgggtgagg
gaggctccttaaagcagccttcgacccatccacagacagcctcacgtgtc
tccaacttaccttatgccttttaacggcagagacttctgaatgtcagtta
attctttgggggtaaattaatctaaataaaatgcgcacaataaa
ccctatccctaatccagattggtggaataacttggtatagatgtttgtgc
attaaaaaccctgtaggatcttcactctaggtcactgttcagcactggaa
cctgaattgtggccctgagtgataggtcctgggacatatgcagttctgca
cagacagacagacagacagacagacagacagacagacagacgtacaaaca
aacacgtgagcgtgtgcaacacacacacaaacaccactcctggccataat
tattgaggacgtgattttattattctgtgtttgtgagtctgtctgtctgt
ctgtctgtctgtctgtctatcagaccaaaagaaaccaaacaattatggct
gcctgcctgcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_181665504_181665977
seq2: B6Ng01-337E01.g_62_430

seq1  GAATTCCCCTTATCCCTAAGTCCAGATTGGTGGAATAACTTGGTACAGAT  50
      ||||||||| ||||||||| ||||||||||||||||||||||||| ||||
seq2  GAATTCCCC-TATCCCTAA-TCCAGATTGGTGGAATAACTTGGTATAGAT  48

seq1  GTTTGTGGATTTTAGGCATTAAAAACCCTGTAGGATCTTCACTCTAGG--  98
      ||||||         |||||||||||||||||||||||||||||||||  
seq2  GTTTGT---------GCATTAAAAACCCTGTAGGATCTTCACTCTAGGTC  89

seq1  -----TCAGCTCTGGAACCTGAATTGTGGCCCTGAGTGATAGGTCCTGGG  143
           ||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCAGCACTGGAACCTGAATTGTGGCCCTGAGTGATAGGTCCTGGG  139

seq1  ACATATGCAGTTCTGC------------ACAGACAGACAGACAGACAGAT  181
      ||||||||||||||||            ||||||||||||||||||||| 
seq2  ACATATGCAGTTCTGCACAGACAGACAGACAGACAGACAGACAGACAGAC  189

seq1  GGACGGACGGACAAATAAACAC----GCTTG-------------------  208
       ||| |||| ||||| ||||||    || ||                   
seq2  AGACAGACGTACAAACAAACACGTGAGCGTGTGCAACACACACACAAACA  239

seq1  ------CTGGCTAAGATTCTTGAGGACGTGATTGTATTATTGTGTGTTTG  252
            ||||| |  ||| |||||||||||||| ||||||| ||||||||
seq2  CCACTCCTGGCCATAATTATTGAGGACGTGATTTTATTATTCTGTGTTTG  289

seq1  TGAGTGTGTGTGCGCGCGAGAGAGAGAGAGAGTGTGTGTGTGTGTGTGTG  302
      |||                                    || ||| ||| 
seq2  TGA------------------------------------GTCTGTCTGTC  303

seq1  TGTCTGTCTGTCTGTCTGTCTCTATGGCCAACTAGGTTCCCCCTTACAGA  352
      |||||||||||||||||||||                             
seq2  TGTCTGTCTGTCTGTCTGTCT-----------------------------  324

seq1  TTTGTGTTTCAGAGATTCTTATTTATTTCTTGTATCTGTGCTTGCGTATG  402
                                                        
seq2  --------------------------------------------------  324

seq1  ACCTAGGCAACACATCCTGAAAAACAAACCAAACCAAAAGAAACCAAACA  452
                                 | || ||||||||||||||||||
seq2  ---------------------------ATCAGACCAAAAGAAACCAAACA  347

seq1  ATTATGGCTGCCTGCCTGCCTG  474
      ||||||||||||||||||||||
seq2  ATTATGGCTGCCTGCCTGCCTG  369