BAC Information

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BAC

Clone NameB6Ng01-338B18
Chromosome2 (Build37)
Map Location 7,890,059 - 8,065,675
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040648
Downstream geneLOC672230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338B18.bB6Ng01-338B18.g
ACCGA122514GA122515
length1,1471,155
definitionB6Ng01-338B18.b B6Ng01-338B18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,890,059 - 7,891,212)(8,064,518 - 8,065,675)
sequence
gaattcctgatgttttcccaagctcaatattgccttctctgaaatgtgac
tccagctgtagccaggagccatgcctctctgtgagatgaatcactcttaa
taacaaatttcccaactgaaaaaaaatcttcactcaccaagcattacaca
aacaagtcatatctaattctctgtagtgaaagcaccattaagatatatgc
acatacatcctttcagctaaggtggtgccataaagctgtgttatcaatgt
gttgaatgttcttgcagtgatgtttagggctacagtaatacaatttagag
acattttgcttctctctacatttgcaggatgcaacactaaaagaaatcat
tacaatatattactgaagataaaactgttagactgtagcaattttaatat
ggtgaacctaggccaaatatcgaagctggcatttactttattgcgttcga
tgtctcttgtttgaaggttctcagtaatgaaaattccaatgaaagtcata
ctgatctttattgatataatctcaataaagtgaaacctaaataaaaaatt
taggttaccttatttaatgagaaggtaggaaatgaaatcattctggaaga
catttttaaatggccaatcaggtgtagtataacaattgcctggatatttt
tatgcttttggagatgcaatgtgcattttgaggagtgttttgagactgat
ttactatacagagtacttcattattgtgattataacatgctactatacag
ttattatgctcaaataattctagaatgttctgtaggatttctaaagaata
cactggtcttactcttatccccatatggcccaatgtttccctccaaatct
ctgtatgatggcaaaaatatttggtaagaatattggtggtatattaaaac
ttcttttaattttgttttacctcaataaatattgcatttgtacgatattt
aattgtatcaaagctgttttaggatataagcaattaattcttgctttaga
tgcccctggttctggggaactgttgtttatgaatttagaacaaacctcat
agactctcaatataataaagctatttaccatttgtatataattgcatatg
tacatattccacaaattttattcaggaacctttcataatattggaaa
gaattcattttcagaaacaaatggaaacaagaaaaatgccatgctaaaaa
aattccaataacactaaggtacatacaaacacacacacacacacacacac
atgtacagagagagagagagagagagagagagagagagagagagcgctaa
aacaagtgcacaagcatgtgattcatggacacatagactttaaacatctg
aaaatcttcaagacttaattgtagtaaaagaaaacaaggtcatagttcat
accaaagacaaacagaaaatcacaaaagtctaaatgataagaaacataag
tcatttcctgaaagatataagtgcatttagttagaattttatacttagtt
aaactatctttcaaaaataatatccaaatggagaccctgttgtaagaaat
gtaaaatgaagttattatggtcaggcaaaatgtataaaacagaagattat
attcacaggaagaaacaccagaattggcaaaagtgaaaggtaaactgaaa
gtatttaattactaattctttttgaaaccattgaataatctaaagcaaaa
tttgaaggagtatataaatatattggtgactaatggcatataggaaatca
gaattaatattatcaatttcacaaatgctatgcaggagaaactcagataa
aaatggctgtattttaaatactgatatgtggtcatataatggaactataa
tggaactgtgattaattagagcttgtatttgaattctacaaatgatcaag
ggtgattttgatgaaagacattttgtcttcattatgaagaaggtcacatg
tggttcatatttttcaagtttatgtaatgatgcactagaaagcattcatt
tcactgtatataataaaagttacataaatctaaaattctaaaacatgaag
gctttgttttattattatgctcactaggatgttgaacaattcaatattac
ttgatggaaattaatttgatagaattaaaggtaggtcattatcaattact
gattcagagatagaccatctacttgaaatttgccagtatcccaagggttt
tgccgatgacatttttatatttggagggctactggtgtcaaggtgctggg
ggagcctggaaattagaggaatgtgtggaaaaacttaaaggcctccaata
aatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_7890059_7891212
seq2: B6Ng01-338B18.b_45_1191

seq1  GAATTCCTGATGTTTTCCCAAGCTCAATATTGCCTTCTCTGAAATGTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATGTTTTCCCAAGCTCAATATTGCCTTCTCTGAAATGTGAC  50

seq1  TCCAGCTGTAGCCAGGAGCCATGCCTCTCTGTGAGATGAATCACTCTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTGTAGCCAGGAGCCATGCCTCTCTGTGAGATGAATCACTCTTAA  100

seq1  TAACAAATTTCCCAACTGAAAAAAAATCTTCACTCACCAAGCATTACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAATTTCCCAACTGAAAAAAAATCTTCACTCACCAAGCATTACACA  150

seq1  AACAAGTCATATCTAATTCTCTGTAGTGAAAGCACCATTAAGATATATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTCATATCTAATTCTCTGTAGTGAAAGCACCATTAAGATATATGC  200

seq1  ACATACATCCTTTCAGCTAAGGTGGTGCCATAAAGCTGTGTTATCAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATCCTTTCAGCTAAGGTGGTGCCATAAAGCTGTGTTATCAATGT  250

seq1  GTTGAATGTTCTTGCAGTGATGTTTAGGGCTACAGTAATACAATTTAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATGTTCTTGCAGTGATGTTTAGGGCTACAGTAATACAATTTAGAG  300

seq1  ACATTTTGCTTCTCTCTACATTTGCAGGATGCAACACTAAAAGAAATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTGCTTCTCTCTACATTTGCAGGATGCAACACTAAAAGAAATCAT  350

seq1  TACAATATATTACTGAAGATAAAACTGTTAGACTGTAGCAATTTTAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATATATTACTGAAGATAAAACTGTTAGACTGTAGCAATTTTAATAT  400

seq1  GGTGAACCTAGGCCAAATATCGAAGCTGGCATTTACTTTATTGCGTTCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAACCTAGGCCAAATATCGAAGCTGGCATTTACTTTATTGCGTTCGA  450

seq1  TGTCTCTTGTTTGAAGGTTCTCAGTAATGAAAATTCCAATGAAAGTCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTGTTTGAAGGTTCTCAGTAATGAAAATTCCAATGAAAGTCATA  500

seq1  CTGATCTTTATTGATATAATCTCAATAAAGTGAAACCTAAATAAAAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTTTATTGATATAATCTCAATAAAGTGAAACCTAAATAAAAAATT  550

seq1  TAGGTTACCTTATTTAATGAGAAGGTAGGAAATGAAATCATTCTGGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTACCTTATTTAATGAGAAGGTAGGAAATGAAATCATTCTGGAAGA  600

seq1  CATTTTTAAATGGCCAATCAGGTGTAGTATAACAATTGCCTGGATATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAAATGGCCAATCAGGTGTAGTATAACAATTGCCTGGATATTTT  650

seq1  TATGCTTTTGGAGATGCAATGTGCATTTTGAGGAGTGTTTTGAGACTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTTTGGAGATGCAATGTGCATTTTGAGGAGTGTTTTGAGACTGAT  700

seq1  TTACTATACAGAGTACTTCATTATTGTGATTATAACATGCTACTATACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATACAGAGTACTTCATTATTGTGATTATAACATGCTACTATACAG  750

seq1  TTATTATGCTCAAATAATTCTAGAATGTTCTGTAGGATTTCTAAAGAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGCTCAAATAATTCTAGAATGTTCTGTAGGATTTCTAAAGAATA  800

seq1  CACTGGTCTTACTCTTATCCCCATATGGCCCAATGTTTCCCTCCAAATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTCTTACTCTTATCCCCATATGGCCCAATGTTTCCCTCCAAATCT  850

seq1  CTGTATGATGGCAAAAATATTTGGTAAGAATATTGGTGGTATATTAAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGATGGCAAAAATATTTGGTAAGAATATTGGTGGTATATTAAAAC  900

seq1  TTCTTTTAATTTTGTTTTACCTCAATAAATATTGCATTTGTACGATATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTAATTTTGTTTTACCTCAATAAATATTGCATTTGTACGATATTT  950

seq1  AATTGTATCAAAAGCTGTTTTAGGATATAAGCAATTAATTCTTGCTTTAG  1000
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTATC-AAAGCTGTTTTAGGATATAAGCAATTAATTCTTGCTTTAG  999

seq1  ATGCCCCCTGGTTCTGGGGAACTG-TGTTTATGAATTTAGAAACAAAACC  1049
      ||| |||||||||||||||||||| |||||||||||||||||   |||||
seq2  ATG-CCCCTGGTTCTGGGGAACTGTTGTTTATGAATTTAGAA--CAAACC  1046

seq1  TCATAGACTCTCATTAATAATAAAAGCTATTTACCATTTGTATATATTTG  1099
      ||||||||||||| | ||||| |||||||||||||||||||||||| |||
seq2  TCATAGACTCTCAAT-ATAAT-AAAGCTATTTACCATTTGTATATAATTG  1094

seq1  TATATGTACCATATCACA-AAATTGTATTCA-GAACTTTTCATAAATAAT  1147
       ||||||| |||||  || ||||| |||||| |||| |||||| ||||  
seq2  CATATGTA-CATATTCCACAAATTTTATTCAGGAACCTTTCAT-AATA--  1140

seq1  TTGGAAA  1154
      |||||||
seq2  TTGGAAA  1147

seq1: chr2_8064518_8065675
seq2: B6Ng01-338B18.g_67_1221 (reverse)

seq1  GTATTTATTGTGAAG-CTTTAAGTTTTTTCACACATT-CTCTAAATTTTC  48
      |||||||||| || | |||||||||||| |||||||| ||||||  ||||
seq2  GTATTTATTG-GAGGCCTTTAAGTTTTTCCACACATTCCTCTAA--TTTC  47

seq1  CAGCCTCCCCCAGCA-CTTGACACCAGTAG-CCTCAAAATAT-AAAATGT  95
      ||| ||||||||||| |||||||||||||| |||| |||||| |||||||
seq2  CAGGCTCCCCCAGCACCTTGACACCAGTAGCCCTCCAAATATAAAAATGT  97

seq1  CATCGGGCAAAAACCTTGGGATACTGGCAAATTTTCAAGTAGGATGGTCT  145
      |||| ||||||| |||||||||||||||||| ||||||||| ||||||||
seq2  CATC-GGCAAAACCCTTGGGATACTGGCAAA-TTTCAAGTA-GATGGTCT  144

seq1  ATTCTCTGAAATCAGTAATTGATAATGACCTACCTTTAATTCTATCAAAT  195
      | |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  A-TCTCTG-AATCAGTAATTGATAATGACCTACCTTTAATTCTATCAAAT  192

seq1  TAATTTCCATCAAGTAATATTGAATTGTTCAACATCCTAGTGAGCATAAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCCATCAAGTAATATTGAATTGTTCAACATCCTAGTGAGCATAAT  242

seq1  AATAAAACAAAGCCTTCATGTTTTAGAATTTTAGATTTATGTAACTTTTA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACAAAGCCTTCATGTTTTAGAATTTTAGATTTATGTAACTTTTA  292

seq1  TTATATACAGTGAAATGAATGCTTTCTAGTGCATCATTACATAAACTTGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATACAGTGAAATGAATGCTTTCTAGTGCATCATTACATAAACTTGA  342

seq1  AAAATATGAACCACATGTGACCTTCTTCATAATGAAGACAAAATGTCTTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGAACCACATGTGACCTTCTTCATAATGAAGACAAAATGTCTTT  392

seq1  CATCAAAATCACCCTTGATCATTTGTAGAATTCAAATACAAGCTCTAATT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAATCACCCTTGATCATTTGTAGAATTCAAATACAAGCTCTAATT  442

seq1  AATCACAGTTCCATTATAGTTCCATTATATGACCACATATCAGTATTTAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAGTTCCATTATAGTTCCATTATATGACCACATATCAGTATTTAA  492

seq1  AATACAGCCATTTTTATCTGAGTTTCTCCTGCATAGCATTTGTGAAATTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGCCATTTTTATCTGAGTTTCTCCTGCATAGCATTTGTGAAATTG  542

seq1  ATAATATTAATTCTGATTTCCTATATGCCATTAGTCACCAATATATTTAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTAATTCTGATTTCCTATATGCCATTAGTCACCAATATATTTAT  592

seq1  ATACTCCTTCAAATTTTGCTTTAGATTATTCAATGGTTTCAAAAAGAATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCTTCAAATTTTGCTTTAGATTATTCAATGGTTTCAAAAAGAATT  642

seq1  AGTAATTAAATACTTTCAGTTTACCTTTCACTTTTGCCAATTCTGGTGTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTAAATACTTTCAGTTTACCTTTCACTTTTGCCAATTCTGGTGTT  692

seq1  TCTTCCTGTGAATATAATCTTCTGTTTTATACATTTTGCCTGACCATAAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGTGAATATAATCTTCTGTTTTATACATTTTGCCTGACCATAAT  742

seq1  AACTTCATTTTACATTTCTTACAACAGGGTCTCCATTTGGATATTATTTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCATTTTACATTTCTTACAACAGGGTCTCCATTTGGATATTATTTT  792

seq1  TGAAAGATAGTTTAACTAAGTATAAAATTCTAACTAAATGCACTTATATC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGATAGTTTAACTAAGTATAAAATTCTAACTAAATGCACTTATATC  842

seq1  TTTCAGGAAATGACTTATGTTTCTTATCATTTAGACTTTTGTGATTTTCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGAAATGACTTATGTTTCTTATCATTTAGACTTTTGTGATTTTCT  892

seq1  GTTTGTCTTTGGTATGAACTATGACCTTGTTTTCTTTTACTACAATTAAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCTTTGGTATGAACTATGACCTTGTTTTCTTTTACTACAATTAAG  942

seq1  TCTTGAAGATTTTCAGATGTTTAAAGTCTATGTGTCCATGAATCACATGC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAGATTTTCAGATGTTTAAAGTCTATGTGTCCATGAATCACATGC  992

seq1  TTGTGCACTTGTTTTAGCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCACTTGTTTTAGCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  1042

seq1  TCTCTCTGTACATGTGTGTGTGTGTGTGTGTGTGTTTGTATGTACCTTAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGTACATGTGTGTGTGTGTGTGTGTGTGTTTGTATGTACCTTAG  1092

seq1  TGTTATTGGAATTTTTTTAGCATGGCATTTTTCTTGTTTCCATTTGTTTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTGGAATTTTTTTAGCATGGCATTTTTCTTGTTTCCATTTGTTTC  1142

seq1  TGAAAATGAATTC  1158
      |||||||||||||
seq2  TGAAAATGAATTC  1155