BAC Information

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BAC

Clone NameB6Ng01-338F10
Chromosome2 (Build37)
Map Location 99,837,330 - 99,915,943
singlet/doubletdoublet
Overlap geneLOC668702
Upstream geneLOC621386
Downstream geneLOC100042907, LOC241572, LOC668705
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338F10.bB6Ng01-338F10.g
ACCGA122675GA122676
length1,0831,085
definitionB6Ng01-338F10.b B6Ng01-338F10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,837,330 - 99,838,412)(99,914,848 - 99,915,943)
sequence
gaattcataaataacagaattaaacaaatatgaatagaacttctcaaagg
agatgtctgatatcaatgtatctgtctaaaatggtgctaagaaagagcaa
gaatattttcaaaatgtaaatgtatctttataactgaacagataagagga
ccaatattgacttcattactatttgttatctgtggtggtaaaaccatgac
agactcttactaataaataaacagaagattctcccatttttatattttgc
ctgccctgtctacttccacttgttaattccctaagttaagtaaaatatac
tattttgaattaagattcattcactttagaaatggtaatatgtttgagaa
aaaaatataatttttccctgtggagatcagtacttgattttacaatgtaa
atacacatgcaaatcatatagtctcatatttactagaatgttagaagaaa
gggcatgccttatagtttgggaacataatgggacaatttaatcactaaaa
tactcatgagaatttgtctataaatatcttaggtaattgcatcttctggt
aaacagaataattgcagtttactactataatgccctagtcgaccttgtaa
agtaaatttgttgatgcaaagccattaataatttatattagtaattttat
ttaagttgcttttggctttgtgtaatacagatgaagtaggtctctgaaag
acaatttatgatgttcattattatttatatgatgtgattaattgatatct
gactttgtactgagtgaaacaaaaggttaaaataacagttatatgcattt
gattaactagtaatagatgacaattactttaaactctatatttatgagag
agagaagtcaagatgttttttgtttgtttgtttgttttgtttgtttgttt
ttggttttcaagatagggtttctctgtgtagcccttggctctcctggaac
ttctgtagaccagggctggcctcgaactcagtaatctgcctgcctctgcc
tcccagacgaattttaagataactctaaccagaatttgagatagataata
cacttgagcacatgttcacacagagtatgtcta

gaattcattaatggaaaagtggtcttgaatccaaatgatataattattat
aaatctatctaaattgataactatgatcattttatatgattattccaaat
aaacaccagcaactcaatgagataagtaataatctgagagaggataaaaa
aatccagcattctgcaggtggacagttttatatatgtaaaaccagtagtt
atatatgtaaaacctggaattaaacttgaggtattaaatatattaataaa
tgcagaagaaaacttcatagccattttgatgattttttacttggagaagg
agatgatattacttcactctgaaatttccaaacattgagtcactcttagt
gggtagtgcactcctatcagggttttcacatatggttataaatagatgat
gagcagagccagactgggtgtttagagctcctgattgtatatgtggtata
atttaaatacttgtaaatgttttttaatttgaaagtcaatataactttat
agtttatacattataaaacagactgcgtttttttttatcagaactgtgtt
cattggaggaatatttgatatctaaatagtacaacattttgcagtacaac
attttacaacaacatgctagagtttctgtgtttttagcatcatacttcag
tgttgacaggctaataactttttataattattctaccaagaggattatcc
acggcgactgaataattttagggctatctgaaaaccataaaggtaggaaa
acatgagcagtagtttgcttgtgataaagaaaatggaatttttatgaaag
tgactttgagaaagatttgaaagcatagttataaaatggtgattggtggg
agatatgacaagaaatttcaagtattcttttctagtaacaatagagcagt
aatttttctaagaatttttttactttaatacaatgaaatatgactacaat
tattcccatttcttgctatcaactttctgagtctccaacatactctcttt
tgagtgtccttttatcacacttgtgacatcaacaaagttcagtaagtctg
cccataaataaatagtggtggatcattcatggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_99837330_99838412
seq2: B6Ng01-338F10.b_45_1127

seq1  GAATTCATAAATAACAGAATTAAACAAATATGAATAGAACTTCTCAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAATAACAGAATTAAACAAATATGAATAGAACTTCTCAAAGG  50

seq1  AGATGTCTGATATCAATGTATCTGTCTAAAATGGTGCTAAGAAAGAGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCTGATATCAATGTATCTGTCTAAAATGGTGCTAAGAAAGAGCAA  100

seq1  GAATATTTTCAAAATGTAAATGTATCTTTATAACTGAACAGATAAGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTTCAAAATGTAAATGTATCTTTATAACTGAACAGATAAGAGGA  150

seq1  CCAATATTGACTTCATTACTATTTGTTATCTGTGGTGGTAAAACCATGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATTGACTTCATTACTATTTGTTATCTGTGGTGGTAAAACCATGAC  200

seq1  AGACTCTTACTAATAAATAAACAGAAGATTCTCCCATTTTTATATTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTTACTAATAAATAAACAGAAGATTCTCCCATTTTTATATTTTGC  250

seq1  CTGCCCTGTCTACTTCCACTTGTTAATTCCCTAAGTTAAGTAAAATATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGTCTACTTCCACTTGTTAATTCCCTAAGTTAAGTAAAATATAC  300

seq1  TATTTTGAATTAAGATTCATTCACTTTAGAAATGGTAATATGTTTGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGAATTAAGATTCATTCACTTTAGAAATGGTAATATGTTTGAGAA  350

seq1  AAAAATATAATTTTTCCCTGTGGAGATCAGTACTTGATTTTACAATGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATAATTTTTCCCTGTGGAGATCAGTACTTGATTTTACAATGTAA  400

seq1  ATACACATGCAAATCATATAGTCTCATATTTACTAGAATGTTAGAAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATGCAAATCATATAGTCTCATATTTACTAGAATGTTAGAAGAAA  450

seq1  GGGCATGCCTTATAGTTTGGGAACATAATGGGACAATTTAATCACTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGCCTTATAGTTTGGGAACATAATGGGACAATTTAATCACTAAAA  500

seq1  TACTCATGAGAATTTGTCTATAAATATCTTAGGTAATTGCATCTTCTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATGAGAATTTGTCTATAAATATCTTAGGTAATTGCATCTTCTGGT  550

seq1  AAACAGAATAATTGCAGTTTACTACTATAATGCCCTAGTCGACCTTGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAATAATTGCAGTTTACTACTATAATGCCCTAGTCGACCTTGTAA  600

seq1  AGTAAATTTGTTGATGCAAAGCCATTAATAATTTATATTAGTAATTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATTTGTTGATGCAAAGCCATTAATAATTTATATTAGTAATTTTAT  650

seq1  TTAAGTTGCTTTTGGCTTTGTGTAATACAGATGAAGTAGGTCTCTGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTGCTTTTGGCTTTGTGTAATACAGATGAAGTAGGTCTCTGAAAG  700

seq1  ACAATTTATGATGTTCATTATTATTTATATGATGTGATTAATTGATATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTATGATGTTCATTATTATTTATATGATGTGATTAATTGATATCT  750

seq1  GACTTTGTACTGAGTGAAACAAAAGGTTAAAATAACAGTTATATGCATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGTACTGAGTGAAACAAAAGGTTAAAATAACAGTTATATGCATTT  800

seq1  GATTAACTAGTAATAGATGACAATTACTTTAAACTCTATATTTATGAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAACTAGTAATAGATGACAATTACTTTAAACTCTATATTTATGAGAG  850

seq1  AGAGAAGTCAAGATGTTTTTTGTTTGTTTGTTTG-TTTGTTTGTTTGTTT  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGAGAAGTCAAGATGTTTTTTGTTTGTTTGTTTGTTTTGTTTGTTTGTTT  900

seq1  TTGGTTTTTCAAGATAGGGTTTCTCTGTGTAGCCC-TGGCTCTCCTGGAA  948
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTGG-TTTTCAAGATAGGGTTTCTCTGTGTAGCCCTTGGCTCTCCTGGAA  949

seq1  C-TCTGTAGACCA-GGCTGGCCTCGAACTCAGTAATCTGCCTGCCTCTGC  996
      | ||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTAGACCAGGGCTGGCCTCGAACTCAGTAATCTGCCTGCCTCTGC  999

seq1  CTCCCAAGACGAATTTTAAGATAACTCTAAACCAGAATTTTGAAGATAGA  1046
      ||||| |||||||||||||||||||||| |||||||||||   |||||||
seq2  CTCCC-AGACGAATTTTAAGATAACTCT-AACCAGAATTT--GAGATAGA  1045

seq1  T-ATACAC-TGAGCACATGTTCACACAGAAGTATGTCTA  1083
      | |||||| ||||||||||||||||||| ||||||||||
seq2  TAATACACTTGAGCACATGTTCACACAG-AGTATGTCTA  1083


seq1: chr2_99914848_99915943
seq2: B6Ng01-338F10.g_66_1150 (reverse)

seq1  TCTCCATTGAATTGATCCACACTTATTTTATTTATGGGCAGGACTTACTG  50
      |||||| |||| ||||||||   || |||||||||||||| |||||||||
seq2  TCTCCA-TGAA-TGATCCACCACTA-TTTATTTATGGGCA-GACTTACTG  46

seq1  AACTTTGTTGATTGTCAACAAGTGTGGATAAAAAGGACACTCAAAAGAGA  100
      ||||||||||| |||| |||||||| ||| ||||||||||||||||||||
seq2  AACTTTGTTGA-TGTC-ACAAGTGT-GAT-AAAAGGACACTCAAAAGAGA  92

seq1  GTATGTTGGGAGACCTCAGGAAAGTTGATAGCAAGAAATGGGAATAATTG  150
      ||||||| ||||| |||| |||||||||||||||||||||||||||||||
seq2  GTATGTT-GGAGA-CTCA-GAAAGTTGATAGCAAGAAATGGGAATAATTG  139

seq1  TAGTCATATTTCATTGTATTAAAGTAAAAAAATTCTTAGAAAAATTACTT  200
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAGTCATATTTCATTGTATTAAAGTAAAAAAATTCTTAGAAAAATTAC-T  188

seq1  GCTCTATTGTTACTAG-AAAGAATACTTGAAATTTCTTGTCATATCTCCC  249
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCTCTATTGTTACTAGAAAAGAATACTTGAAATTTCTTGTCATATCTCCC  238

seq1  ACCAATCACCATTTTATAACTATGCTTTCAAATCTTTCTCAAAGTCACTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATCACCATTTTATAACTATGCTTTCAAATCTTTCTCAAAGTCACTT  288

seq1  TCATAAAAATTCCATTTTCTTTATCACAAGCAAACTACTGCTCATGTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAAATTCCATTTTCTTTATCACAAGCAAACTACTGCTCATGTTTT  338

seq1  CCTACCTTTATGGTTTTCAGATAGCCCTAAAATTATTCAGTCGCCGTGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTTTATGGTTTTCAGATAGCCCTAAAATTATTCAGTCGCCGTGGA  388

seq1  TAATCCTCTTGGTAGAATAATTATAAAAAGTTATTAGCCTGTCAACACTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTCTTGGTAGAATAATTATAAAAAGTTATTAGCCTGTCAACACTG  438

seq1  AAGTATGATGCTAAAAACACAGAAACTCTAGCATGTTGTTGTAAAATGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGATGCTAAAAACACAGAAACTCTAGCATGTTGTTGTAAAATGTT  488

seq1  GTACTGCAAAATGTTGTACTATTTAGATATCAAATATTCCTCCAATGAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGCAAAATGTTGTACTATTTAGATATCAAATATTCCTCCAATGAAC  538

seq1  ACAGTTCTGATAAAAAAAAACGCAGTCTGTTTTATAATGTATAAACTATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCTGATAAAAAAAAACGCAGTCTGTTTTATAATGTATAAACTATA  588

seq1  AAGTTATATTGACTTTCAAATTAAAAAACATTTACAAGTATTTAAATTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATATTGACTTTCAAATTAAAAAACATTTACAAGTATTTAAATTAT  638

seq1  ACCACATATACAATCAGGAGCTCTAAACACCCAGTCTGGCTCTGCTCATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATATACAATCAGGAGCTCTAAACACCCAGTCTGGCTCTGCTCATC  688

seq1  ATCTATTTATAACCATATGTGAAAACCCTGATAGGAGTGCACTACCCACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTTATAACCATATGTGAAAACCCTGATAGGAGTGCACTACCCACT  738

seq1  AAGAGTGACTCAATGTTTGGAAATTTCAGAGTGAAGTAATATCATCTCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGACTCAATGTTTGGAAATTTCAGAGTGAAGTAATATCATCTCCT  788

seq1  TCTCCAAGTAAAAAATCATCAAAATGGCTATGAAGTTTTCTTCTGCATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAGTAAAAAATCATCAAAATGGCTATGAAGTTTTCTTCTGCATTT  838

seq1  ATTAATATATTTAATACCTCAAGTTTAATTCCAGGTTTTACATATATAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATATATTTAATACCTCAAGTTTAATTCCAGGTTTTACATATATAAC  888

seq1  TACTGGTTTTACATATATAAAACTGTCCACCTGCAGAATGCTGGATTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTTTTACATATATAAAACTGTCCACCTGCAGAATGCTGGATTTTT  938

seq1  TTATCCTCTCTCAGATTATTACTTATCTCATTGAGTTGCTGGTGTTTATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTCTCTCAGATTATTACTTATCTCATTGAGTTGCTGGTGTTTATT  988

seq1  TGGAATAATCATATAAAATGATCATAGTTATCAATTTAGATAGATTTATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATAATCATATAAAATGATCATAGTTATCAATTTAGATAGATTTATA  1038

seq1  ATAATTATATCATTTGGATTCAAGACCACTTTTCCATTAATGAATTC  1096
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTATATCATTTGGATTCAAGACCACTTTTCCATTAATGAATTC  1085


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