BAC Information

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BAC

Clone NameB6Ng01-338H13
Chromosome2 (Build37)
Map Location 44,427,023 - 44,522,792
singlet/doubletdoublet
Overlap geneGtdc1
Upstream geneKynu, Arhgap15
Downstream geneZeb2, LOC100042661
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338H13.bB6Ng01-338H13.g
ACCGA122765GA122766
length1,2041,147
definitionB6Ng01-338H13.b B6Ng01-338H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,427,023 - 44,428,251)(44,521,629 - 44,522,792)
sequence
gaattcatcaaagcgcagcgctgcatttttgttgtttctaaaatactgtt
taacacattttataatcagcagataaacacattcaacaacatggaaaagt
atggacagcttttcttaataatgctgcaaagactcagaatgttcattttt
caaaaaatgtttaaataaaatagcaaatactttagcagggaagccgtaga
aatgatcgaggcacttttaaagcagcagaaaaaatttacaatctgttgtg
atgggcattttcagttcaagctcgtgcttggaaacaatttgttattatgc
agatgtaaaactctccaattgtggaaaaactcttgttcagatcattttaa
tgaacattttgctcttctgactgaaaatcagcttactttctattttatca
gaatagttttactactaaacaaacacaaagttctgcattgagagtcttcc
tagggactatctctgcgagttttcttcctgtcccaggggtagggggctaa
ggagagggaaggcattgccccttgcagtcctgctaggtttgcataatggc
tattgatttgacgtatcacaaaccttgaagataccactgtcatttctgtt
ggctagaaattatgcagtgaaattcaaaacactctttaaaatatgtttat
tttatgagaaactttgaattgcatccaaaatgttgaccaaaggcggaatt
tattttgaactgcagattttttttcagtccaagaatgatctgaagtcatg
tcaatgtttaccttgtttatttacagtgacagagtacatgcaatttaaac
tgtttttaagtgggtgatggtgtccctatttttatgatgttaaactgaaa
ttagtttaaagaaaaagtatttactttgagctacaatttttggaaaaata
ctaagttgttaccaaacacaatagaaatgcaaaggtttagttaccaatta
tcaactgcagaagacagctatctcaccctttcctaaatgtataagtatga
taagcacagctctatgtaccctggtgctgtagtacaatcataaacaaaaa
cttttggagaatgtcaacttgatgcactcacaacataaaaaaaaaagcaa
ggcaggtgctgagtcactcagtctaaaacgctgtggcacgggaacgcgga
atacacataacagttcttaatccataggtaggtaagtccaggcatgtgga
aagt

gaattcactggcatgcattcctttgatgtaggtagtagacagagaagagt
gcccatcactaacaaacaagtgtcctggacctccaagcaggggaaaaagg
aaaaccttttgtagtctttttgttgttgtttgttctgttttagacatggc
ttagatcaggtgaaataaagtaagagttttgagctcaggtcagcacatgc
agaagcaaatactaaacgctctggaggcttccgtttctttaagtcccagc
tgagaggccccagctaagaggcttgcttctatttgaacggtccaggaagt
gttgcccagtgttacactgctttgcgaaggcaaacacatgagaattaaat
ctgaacatttctgttctgaatgtcaaaaagcaaatttttaaatccaaaat
acacctttggctgtcttcttttagggaggatatttaaagtaaaaccaatg
tgctttggagcaaagggaacttactacttaaatcacctgttgctgttaga
aattgagagtaaatatttgactttattactctaaatggagtcacgtgttt
caaaaagtagagtcgacttttagcaggtcagccatatctctttggaagta
tataaggagctccaatgacattttatcaagaggtttgcagtatgcacatt
ttaaaactttcatccccctgggtccctttttaaaagacactgtaaattac
aagaaacttaagaaagccaagactgtcagcatgctggagatagttggtag
tgcttccttcatggccctggtgcttcatggcctctgttaaacccctactt
ccataattagaattggaggagtgacttgaacagacatcaagaaactgatt
gtcagagtgtcgaataactaaaacagagacaattagaaatcaggatagta
cacagaaagggacacagtccctaaggtaaccagatcagagggaggaatgg
gggactgtgaccagttttagaggtttcagcctgaggagactgaccagtgg
ctaggtaaatcaccatgcatgctctgtggaagaaagctttttcataccag
gctcagatacaaacgggggtcgggggtggggggcagcttgtgtccaggtg
tcccttaagacactggctacctattgcagctcaccattcaagcagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_44427023_44428251
seq2: B6Ng01-338H13.b_44_1247

seq1  GAATTCATCAAAGCGCAGCGCTGCATTTTTGTTGTTTCTAAAATACTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAAAGCGCAGCGCTGCATTTTTGTTGTTTCTAAAATACTGTT  50

seq1  TAACACATTTTATAATCAGCAGATAAACACATTCAACAACATGGAAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACATTTTATAATCAGCAGATAAACACATTCAACAACATGGAAAAGT  100

seq1  ATGGACAGCTTTTCTTAATAATGCTGCAAAGACTCAGAATGTTCATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACAGCTTTTCTTAATAATGCTGCAAAGACTCAGAATGTTCATTTTT  150

seq1  CAAAAAATGTTTAAATAAAATAGCAAATACTTTAGCAGGGAAGCCGTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAATGTTTAAATAAAATAGCAAATACTTTAGCAGGGAAGCCGTAGA  200

seq1  AATGATCGAGGCACTTTTAAAGCAGCAGAAAAAATTTACAATCTGTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCGAGGCACTTTTAAAGCAGCAGAAAAAATTTACAATCTGTTGTG  250

seq1  ATGGGCATTTTCAGTTCAAGCTCGTGCTTGGAAACAATTTGTTATTATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCATTTTCAGTTCAAGCTCGTGCTTGGAAACAATTTGTTATTATGC  300

seq1  AGATGTAAAACTCTCCAATTGTGGAAAAACTCTTGTTCAGATCATTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAAAACTCTCCAATTGTGGAAAAACTCTTGTTCAGATCATTTTAA  350

seq1  TGAACATTTTGCTCTTCTGACTGAAAATCAGCTTACTTTCTATTTTATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATTTTGCTCTTCTGACTGAAAATCAGCTTACTTTCTATTTTATCA  400

seq1  GAATAGTTTTACTACTAAACAAACACAAAGTTCTGCATTGAGAGTCTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGTTTTACTACTAAACAAACACAAAGTTCTGCATTGAGAGTCTTCC  450

seq1  TAGGGACTATCTCTGCGAGTTTTCTTCCTGTCCCAGGGGTAGGGGGCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGACTATCTCTGCGAGTTTTCTTCCTGTCCCAGGGGTAGGGGGCTAA  500

seq1  GGAGAGGGAAGGCATTGCCCCTTGCAGTCCTGCTAGGTTTGCATAATGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGGAAGGCATTGCCCCTTGCAGTCCTGCTAGGTTTGCATAATGGC  550

seq1  TATTGATTTGACGTATCACAAACCTTGAAGATACCACTGTCATTTCTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATTTGACGTATCACAAACCTTGAAGATACCACTGTCATTTCTGTT  600

seq1  GGCTAGAAATTATGCAGTGAAATTCAAAACACTCTTTAAAATATGTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGAAATTATGCAGTGAAATTCAAAACACTCTTTAAAATATGTTTAT  650

seq1  TTTATGAGAAACTTTGAATTGCATCCAAAATGTTGACCAAAGGCGGAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAGAAACTTTGAATTGCATCCAAAATGTTGACCAAAGGCGGAATT  700

seq1  TATTTTGAACTGCAGATTTTTTTTCAGTCCAAGAATGATCTGAAGTCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGAACTGCAGATTTTTTTTCAGTCCAAGAATGATCTGAAGTCATG  750

seq1  TCAATGTTTACCTTGTTTATTTACAGTGACAGAGTACATGCAATTTAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTTTACCTTGTTTATTTACAGTGACAGAGTACATGCAATTTAAAC  800

seq1  TGTTTTTAAGTGGGTGATGGTGTCCCTATTTTTATGATGTTAAACTGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAAGTGGGTGATGGTGTCCCTATTTTTATGATGTTAAACTGAAA  850

seq1  TTAGTTTAAAGAAAAAGTATTTACTTTGAGCTACAATTTTTGGAAAAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTAAAGAAAAAGTATTTACTTTGAGCTACAATTTTTGGAAAAATA  900

seq1  CTAAGTTGTTACCAAACACAATAGAAATGCAAAGGTTTTAGTTACCAATT  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTAAGTTGTTACCAAACACAATAGAAATGCAAAGG-TTTAGTTACCAATT  949

seq1  ATCAACTGCAGAAGACAAGCTATCTCACCCTTTCCTAAATGTATAAGTAT  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATCAACTGCAGAAGAC-AGCTATCTCACCCTTTCCTAAATGTATAAGTAT  998

seq1  GATAAGCACAGCTCTATGTTACCCT-GTGCTGTAGTACAAATCATAAAAC  1049
      |||||||||||||||||| |||||| |||||||||||| |||||| ||||
seq2  GATAAGCACAGCTCTATG-TACCCTGGTGCTGTAGTAC-AATCAT-AAAC  1045

seq1  AAAAAACTTTTGAGAATGTCAACCTTGATGCACTTCACAAACCATAAAAA  1099
      |||||  ||| ||||||||||| |||||||||| ||||||  |||  |||
seq2  AAAAACTTTTGGAGAATGTCAA-CTTGATGCAC-TCACAA--CAT--AAA  1089

seq1  AAAAAAAGCAAGCCCAGTGCCTGAAGTCACTCAGTTCTAAAACGCTGTGC  1149
      |||||||||||| |  ||| ||| |||||||||| |||||||||||||| 
seq2  AAAAAAAGCAAGGCAGGTG-CTG-AGTCACTCAG-TCTAAAACGCTGTGG  1136

seq1  CAACGGAAACGC-GAATACACATAAACAGTCTCTTATAATCACATAAAGT  1198
      | |||| ||||| |||||||||| |||||| |||  ||||| |||  || 
seq2  C-ACGGGAACGCGGAATACACAT-AACAGT-TCT--TAATC-CAT--AGG  1178

seq1  TAAGGGTAAAGTCACAGGCATGTCGGAAAGT  1229
      ||  ||| ||||| ||||||||| |||||||
seq2  TA--GGT-AAGTC-CAGGCATGT-GGAAAGT  1204


seq1: chr2_44521629_44522792
seq2: B6Ng01-338H13.g_63_1209 (reverse)

seq1  TACTGCTGGAAAGTGGTGGAGCTGCAATAGGTTGAGCCCAGTGTCCTTAA  50
      ||||||| |||  |||| |||||||||||||| |   ||||||||  | |
seq2  TACTGCTTGAA--TGGT-GAGCTGCAATAGGTAG---CCAGTGTC--TTA  42

seq1  AGGGACAACTGGGAACACAGACCTGCCCCCCA-CCCCGACCCCCGTTTTG  99
      ||||||| ||||  ||||| | |||||||||| |||||||||||| ||||
seq2  AGGGACACCTGG--ACACA-AGCTGCCCCCCACCCCCGACCCCCG-TTTG  88

seq1  TATCCTGAGCCCTGTTATGAAAAAAGCTTTCTTCCACAGAAGCCATGCAT  149
      ||| ||||| |||| |||| ||||||||||||||||||||   |||||||
seq2  TAT-CTGAG-CCTGGTATG-AAAAAGCTTTCTTCCACAGA--GCATGCAT  133

seq1  GGTGATTTACCTAGCCACTGGTCAGTCTTCCTCAGGCTGAAACCTCTAAA  199
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGTGATTTACCTAGCCACTGGTCAGTC-TCCTCAGGCTGAAACCTCTAAA  182

seq1  ACTGGTCCACAGTCCCCCATTCCTCCCTCTGATCTGGTTACCTTAGGGAC  249
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGT-CACAGTCCCCCATTCCTCCCTCTGATCTGGTTACCTTAGGGAC  231

seq1  TGTGT-CCTTTCTGTGTACTATCCTGATTTCTAATTGTCTCTGTTTTAGT  298
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCCTTTCTGTGTACTATCCTGATTTCTAATTGTCTCTGTTTTAGT  281

seq1  TATTCGACACTCTGACAATCAGTTTCTTGATGTCTGTTCAAGTCACTCCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCGACACTCTGACAATCAGTTTCTTGATGTCTGTTCAAGTCACTCCT  331

seq1  CCAATTCTAATTATGGAAGTAGGGGTTTAACAGAGGCCATGAAGCACCAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCTAATTATGGAAGTAGGGGTTTAACAGAGGCCATGAAGCACCAG  381

seq1  GGCCATGAAGGAAGCACTACCAACTATCTCCAGCATGCTGACAGTCTTGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGAAGGAAGCACTACCAACTATCTCCAGCATGCTGACAGTCTTGG  431

seq1  CTTTCTTAAGTTTCTTGTAATTTACAGTGTCTTTTAAAAAGGGACCCAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTAAGTTTCTTGTAATTTACAGTGTCTTTTAAAAAGGGACCCAGG  481

seq1  GGGATGAAAGTTTTAAAATGTGCATACTGCAAACCTCTTGATAAAATGTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGAAAGTTTTAAAATGTGCATACTGCAAACCTCTTGATAAAATGTC  531

seq1  ATTGGAGCTCCTTATATACTTCCAAAGAGATATGGCTGACCTGCTAAAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGCTCCTTATATACTTCCAAAGAGATATGGCTGACCTGCTAAAAG  581

seq1  TCGACTCTACTTTTTGAAACACGTGACTCCATTTAGAGTAATAAAGTCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACTCTACTTTTTGAAACACGTGACTCCATTTAGAGTAATAAAGTCAA  631

seq1  ATATTTACTCTCAATTTCTAACAGCAACAGGTGATTTAAGTAGTAAGTTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACTCTCAATTTCTAACAGCAACAGGTGATTTAAGTAGTAAGTTC  681

seq1  CCTTTGCTCCAAAGCACATTGGTTTTACTTTAAATATCCTCCCTAAAAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCTCCAAAGCACATTGGTTTTACTTTAAATATCCTCCCTAAAAGA  731

seq1  AGACAGCCAAAGGTGTATTTTGGATTTAAAAATTTGCTTTTTGACATTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCCAAAGGTGTATTTTGGATTTAAAAATTTGCTTTTTGACATTCA  781

seq1  GAACAGAAATGTTCAGATTTAATTCTCATGTGTTTGCCTTCGCAAAGCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAAATGTTCAGATTTAATTCTCATGTGTTTGCCTTCGCAAAGCAG  831

seq1  TGTAACACTGGGCAACACTTCCTGGACCGTTCAAATAGAAGCAAGCCTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACACTGGGCAACACTTCCTGGACCGTTCAAATAGAAGCAAGCCTCT  881

seq1  TAGCTGGGGCCTCTCAGCTGGGACTTAAAGAAACGGAAGCCTCCAGAGCG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGGGCCTCTCAGCTGGGACTTAAAGAAACGGAAGCCTCCAGAGCG  931

seq1  TTTAGTATTTGCTTCTGCATGTGCTGACCTGAGCTCAAAACTCTTACTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTATTTGCTTCTGCATGTGCTGACCTGAGCTCAAAACTCTTACTTT  981

seq1  ATTTCACCTGATCTAAGCCATGTCTAAAACAGAACAAACAACAACAAAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACCTGATCTAAGCCATGTCTAAAACAGAACAAACAACAACAAAAA  1031

seq1  GACTACAAAAGGTTTTCCTTTTTCCCCTGCTTGGAGGTCCAGGACACTTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAAAAGGTTTTCCTTTTTCCCCTGCTTGGAGGTCCAGGACACTTG  1081

seq1  TTTGTTAGTGATGGGCACTCTTCTCTGTCTACTACCTACATCAAAGGAAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAGTGATGGGCACTCTTCTCTGTCTACTACCTACATCAAAGGAAT  1131

seq1  GCATGCCAGTGAATTC  1164
      ||||||||||||||||
seq2  GCATGCCAGTGAATTC  1147


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