BAC Information

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BAC

Clone NameB6Ng01-338I12
Chromosome2 (Build37)
Map Location 56,290,308 - 56,426,400
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnj3
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338I12.bB6Ng01-338I12.g
ACCGA122804GA122805
length1,2121,173
definitionB6Ng01-338I12.b B6Ng01-338I12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,290,308 - 56,291,525)(56,425,207 - 56,426,400)
sequence
gaattcttaagcaggaacagtcacaggaatttacccaaagtcagaagcta
gaaagccacagttctgagattcagattgaggtactctggccgcctaacta
agaaagcactgttgattttgttacctgtaaagcttactctgaacagtgct
aagggagaaaaatcagcacattttatttctaaaagtctaaggattgaaat
gttttatgttcttttttgtcctcaaaggaaaatcaagttacacaagaagg
ccagtatataatagctttgtagatcatatacttctcaatcacaaactttt
ctcaactctttttcaagcctagatcatgatggcatgagttgtcagattta
gtcactcctcataagttcatttgataaccatttatttttcctcaatacat
cctccatagatgttaataaaattaaacatgacctctaagaacattccttg
tatttatgttaagttaaaataaaaataaattataagcagacaaattgatt
cttagttttgatgttaaacccaagtaccttgtatacaaactacaaaagta
gatatcttgggtcatagtcaagtagaactcataacacagggctgaaaaat
ccaagaataagccattatgtcatggatatcaggaaagttaataagaatcc
tatgaagcctgctccagcacctgaacagaattccattgttctttaaattg
gaaatacttgaaaaggccaaacatgtcacatggtttcagaaatgcagaaa
atactatcatcgcctttgctgacccctcttaaatgaagacatagatgata
tacatagataatcccagctctaattctgaccagatgcaaaatcaattaat
tctttttttagcttacaggcagttggtcaaaagtcttagaattattatat
tactataatattatattactataaataatataatattatataatattatt
tatattataataatatagtaatattatattactatagtaccctcaactgt
acaaatgaggaaactggggaccagagaaattgaagacatggttagggttt
gaccaccaggcagtaaagagtagagtgatattcaaatttatagctgtaga
ctttatatagagggttttttttttctatattacagcaacagtagtctcat
tattctgtgaattattgtttcagaagtcctgacagtactaaggtccaagt
gcctttaaaata

gaattcactgagaagtgtgcctttctgatcatttacttaagctctctggt
tttgaaggaaacatcattgctctcttagaactggccagaaagtctggtaa
ttggaagtcaaagttcccttttggagatgatggcctttctcttaatatac
tttggccacttacttaatagggttacacattaataaaaaaatcccacaga
ttaaagctatggggttatttttctaataaaaaaggctccttaaatatctg
gcattttacatcaaattttaatgtttccaatcttgaaatttcagcaaaaa
aatggttgatgtgggttctgttttgataaattataaaggtaaaccttaac
gaccattgaatagaatcacctttgctactcagggtaatagaataaaataa
accaagcaaacacatttttcttactgccacatgcctctccttaataataa
cttttgtcttttttgcagaaatagatgctgtgtaagtctcattaaattac
ctgacgggtggaataaatacacaggccatatagctcggcagtccatagta
aactgagcaagggtcttgatatcgcagagttctgcttatttacacatgcc
ttggactcttctcacagatatgtaaattattccagttaaaactaaatgct
aaagtctacaccattagtcttccacttcatgatctccacatggggctgtt
agaaggataatgtaccatacaatacacggtttacttttaattaatagaaa
aaaatgtgaaatgaatattaaatgtagcttaatgtgaaagaaagctcaaa
gcagtttggtgtaatttatttattttaaaaatattcagtcctgcttcgtg
attagaaaatacgtaataatttactggactagaaaggcttgctggagcct
ttggaaggaacaaagaatttgaagaggcctttgcagccagacagaagtcc
tggctggatacaaaggctaagattgcagaccaggctctgctggtttttgc
atcctaacagactgtcatctgagactccacattcctgcctgagattgtcc
ctgctctatacatacaagtctaggtctgcctataaatcttgaaagcaaaa
aagctcatcaaataaagcttaatcaaccaagatcgttgcctggttaattc
aatgtgtctaagtaatgcctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_56290308_56291525
seq2: B6Ng01-338I12.b_45_1256

seq1  GAATTCTTAAGCAGGAACAGTCACAGGAATTTACCCAAAGTCAGAAGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGCAGGAACAGTCACAGGAATTTACCCAAAGTCAGAAGCTA  50

seq1  GAAAGCCACAGTTCTGAGATTCAGATTGAGGTACTCTGGCCGCCTAACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCACAGTTCTGAGATTCAGATTGAGGTACTCTGGCCGCCTAACTA  100

seq1  AGAAAGCACTGTTGATTTTGTTACCTGTAAAGCTTACTCTGAACAGTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCACTGTTGATTTTGTTACCTGTAAAGCTTACTCTGAACAGTGCT  150

seq1  AAGGGAGAAAAATCAGCACATTTTATTTCTAAAAGTCTAAGGATTGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGAAAAATCAGCACATTTTATTTCTAAAAGTCTAAGGATTGAAAT  200

seq1  GTTTTATGTTCTTTTTTGTCCTCAAAGGAAAATCAAGTTACACAAGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATGTTCTTTTTTGTCCTCAAAGGAAAATCAAGTTACACAAGAAGG  250

seq1  CCAGTATATAATAGCTTTGTAGATCATATACTTCTCAATCACAAACTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATATAATAGCTTTGTAGATCATATACTTCTCAATCACAAACTTTT  300

seq1  CTCAACTCTTTTTCAAGCCTAGATCATGATGGCATGAGTTGTCAGATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTCTTTTTCAAGCCTAGATCATGATGGCATGAGTTGTCAGATTTA  350

seq1  GTCACTCCTCATAAGTTCATTTGATAACCATTTATTTTTCCTCAATACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCCTCATAAGTTCATTTGATAACCATTTATTTTTCCTCAATACAT  400

seq1  CCTCCATAGATGTTAATAAAATTAAACATGACCTCTAAGAACATTCCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATAGATGTTAATAAAATTAAACATGACCTCTAAGAACATTCCTTG  450

seq1  TATTTATGTTAAGTTAAAATAAAAATAAATTATAAGCAGACAAATTGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGTTAAGTTAAAATAAAAATAAATTATAAGCAGACAAATTGATT  500

seq1  CTTAGTTTTGATGTTAAACCCAAGTACCTTGTATACAAACTACAAAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTTTGATGTTAAACCCAAGTACCTTGTATACAAACTACAAAAGTA  550

seq1  GATATCTTGGGTCATAGTCAAGTAGAACTCATAACACAGGGCTGAAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTTGGGTCATAGTCAAGTAGAACTCATAACACAGGGCTGAAAAAT  600

seq1  CCAAGAATAAGCCATTATGTCATGGATATCAGGAAAGTTAATAAGAATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAATAAGCCATTATGTCATGGATATCAGGAAAGTTAATAAGAATCC  650

seq1  TATGAAGCCTGCTCCAGCACCTGAACAGAATTCCATTGTTCTTTAAATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGCCTGCTCCAGCACCTGAACAGAATTCCATTGTTCTTTAAATTG  700

seq1  GAAATACTTGAAAAGGCCAAACATGTCACATGGTTTCAGAAATGCAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACTTGAAAAGGCCAAACATGTCACATGGTTTCAGAAATGCAGAAA  750

seq1  ATACTATCATCGCCTTTGCTGACCCCTCTTAAATGAAGACATAGATGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATCATCGCCTTTGCTGACCCCTCTTAAATGAAGACATAGATGATA  800

seq1  TACATAGATAATCCCAGCTCTAATTCTGACCAGATGCAAAATCAATTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGATAATCCCAGCTCTAATTCTGACCAGATGCAAAATCAATTAAT  850

seq1  TCTTTTTTTAGCTTACAGGCAGTTGGTCAAAAGTCTTAGAATTATTATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTAGCTTACAGGCAGTTGGTCAAAAGTCTTAGAATTATTATAT  900

seq1  TACTATAATATTATATTACTATAAATAATATAATATTATATAATATTATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATAATATTATATTACTATAAATAATATAATATTATATAATATTATT  950

seq1  TATATTATAATAATATAGTAATATTATATTACTATAGTACCCTCAACTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTATAATAATATAGTAATATTATATTACTATAGTACCCTCAACTGT  1000

seq1  ACAAATGAGGAAACTGGGGACCAGAGAAATTGAAGGACATGGTTAGGGTT  1050
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACAAATGAGGAAACTGGGGACCAGAGAAATTGAA-GACATGGTTAGGGTT  1049

seq1  TGACCACCAGGCAGTAAAGAGTAGAGTTGATATTCAAATTTATAGCTGTA  1100
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGACCACCAGGCAGTAAAGAGTAGAG-TGATATTCAAATTTATAGCTGTA  1098

seq1  GACTTTATAATAAGAGGGTTTTTTTTCTATAT-TTACAAGCACAGTAGTT  1149
      |||||||||   |||||||||||||| | ||| |||||   |||||||| 
seq2  GACTTTATA--TAGAGGGTTTTTTTTTTCTATATTACAGCAACAGTAGT-  1145

seq1  CTTCATTA-TCTGTGGATTATTGTTTCCAGGATGTCTGGACAGTACCTAA  1198
        |||||| |||||| |||||||||||   || |||  ||||||||  | 
seq2  -CTCATTATTCTGTGAATTATTGTTTC--AGAAGTCCTGACAGTACTAAG  1192

seq1  GTCCCAATGCTTTTAAAATA  1218
      |||| | ||| |||||||||
seq2  GTCCAAGTGCCTTTAAAATA  1212


seq1: chr2_56425207_56426400
seq2: B6Ng01-338I12.g_68_1240 (reverse)

seq1  CAGAGGCATTACTTTAGACACATTGAATTATAACACAGACAAACAGATCT  50
      |||||||||||| |||||||||||||||  |||| ||| |||   |||||
seq2  CAGAGGCATTAC-TTAGACACATTGAAT--TAAC-CAGGCAA--CGATCT  44

seq1  TGGGTTTTAATTAAAAGCTCTATTTGATGAGCTTTTTTGCTCTC-AGATT  99
      |||   || |||  ||||| ||||||||||||||||||||| || |||||
seq2  TGG---TTGATT--AAGCTTTATTTGATGAGCTTTTTTGCTTTCAAGATT  89

seq1  TAATAGCAGACCTAGACTTTGTATGGTATAGAGCAGGGGACAATCTCAGC  149
      ||   |||||||||||| |||||| |||||||||| ||||||||||||| 
seq2  TATAGGCAGACCTAGAC-TTGTAT-GTATAGAGCA-GGGACAATCTCAGG  136

seq1  AGGGAATGTGGAGTCTCAGATGGACAAGGTCTGTTAGGATGCAAAAAACC  199
        ||||||||||||||||||| ||||  |||||||||||||||||||  |
seq2  CAGGAATGTGGAGTCTCAGAT-GACA--GTCTGTTAGGATGCAAAAA--C  181

seq1  AAGCAGAGCCTGGTCTTGCCAATCTTAGCCTTTGTATCCAGCCCAGGACT  249
       |||||||||||||||   |||||||||||||||||||||| ||||||||
seq2  CAGCAGAGCCTGGTCT--GCAATCTTAGCCTTTGTATCCAG-CCAGGACT  228

seq1  TCTGTCTGGCTTGCAAAGGCCTCTTCAAATTCTTTGTTCCTTCCAAAGGC  299
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGGC-TGCAAAGGCCTCTTCAAATTCTTTGTTCCTTCCAAAGGC  277

seq1  TCCAGCAAGCC-TTCTAGTCCAGTAAATTATTACGTATTTTCTAATCACG  348
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAAGCCTTTCTAGTCCAGTAAATTATTACGTATTTTCTAATCACG  327

seq1  AAGCAGGACTGAATATTTTTAAAATAAATAAATTACACCAAACTGCTTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGACTGAATATTTTTAAAATAAATAAATTACACCAAACTGCTTTG  377

seq1  AGCTTTCTTTCACATTAAGCTACATTTAATATTCATTTCACATTTTTTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTTTCACATTAAGCTACATTTAATATTCATTTCACATTTTTTTC  427

seq1  TATTAATTAAAAGTAAACCGTGTATTGTATGGTACATTATCCTTCTAACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTAAAAGTAAACCGTGTATTGTATGGTACATTATCCTTCTAACA  477

seq1  GCCCCATGTGGAGATCATGAAGTGGAAGACTAATGGTGTAGACTTTAGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCATGTGGAGATCATGAAGTGGAAGACTAATGGTGTAGACTTTAGCA  527

seq1  TTTAGTTTTAACTGGAATAATTTACATATCTGTGAGAAGAGTCCAAGGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTTTAACTGGAATAATTTACATATCTGTGAGAAGAGTCCAAGGCA  577

seq1  TGTGTAAATAAGCAGAACTCTGCGATATCAAGACCCTTGCTCAGTTTACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAATAAGCAGAACTCTGCGATATCAAGACCCTTGCTCAGTTTACT  627

seq1  ATGGACTGCCGAGCTATATGGCCTGTGTATTTATTCCACCCGTCAGGTAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTGCCGAGCTATATGGCCTGTGTATTTATTCCACCCGTCAGGTAA  677

seq1  TTTAATGAGACTTACACAGCATCTATTTCTGCAAAAAAGACAAAAGTTAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGAGACTTACACAGCATCTATTTCTGCAAAAAAGACAAAAGTTAT  727

seq1  TATTAAGGAGAGGCATGTGGCAGTAAGAAAAATGTGTTTGCTTGGTTTAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGGAGAGGCATGTGGCAGTAAGAAAAATGTGTTTGCTTGGTTTAT  777

seq1  TTTATTCTATTACCCTGAGTAGCAAAGGTGATTCTATTCAATGGTCGTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTATTACCCTGAGTAGCAAAGGTGATTCTATTCAATGGTCGTTA  827

seq1  AGGTTTACCTTTATAATTTATCAAAACAGAACCCACATCAACCATTTTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTACCTTTATAATTTATCAAAACAGAACCCACATCAACCATTTTTT  877

seq1  TGCTGAAATTTCAAGATTGGAAACATTAAAATTTGATGTAAAATGCCAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAAATTTCAAGATTGGAAACATTAAAATTTGATGTAAAATGCCAGA  927

seq1  TATTTAAGGAGCCTTTTTTATTAGAAAAATAACCCCATAGCTTTAATCTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAGGAGCCTTTTTTATTAGAAAAATAACCCCATAGCTTTAATCTG  977

seq1  TGGGATTTTTTTATTAATGTGTAACCCTATTAAGTAAGTGGCCAAAGTAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTTTTTTATTAATGTGTAACCCTATTAAGTAAGTGGCCAAAGTAT  1027

seq1  ATTAAGAGAAAGGCCATCATCTCCAAAAGGGAACTTTGACTTCCAATTAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAGAAAGGCCATCATCTCCAAAAGGGAACTTTGACTTCCAATTAC  1077

seq1  CAGACTTTCTGGCCAGTTCTAAGAGAGCAATGATGTTTCCTTCAAAACCA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTTCTGGCCAGTTCTAAGAGAGCAATGATGTTTCCTTCAAAACCA  1127

seq1  GAGAGCTTAAGTAAATGATCAGAAAGGCACACTTCTCAGTGAATTC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTTAAGTAAATGATCAGAAAGGCACACTTCTCAGTGAATTC  1173


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