BAC Information

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BAC

Clone NameB6Ng01-338J07
Chromosome2 (Build37)
Map Location 143,182,900 - 143,272,807
singlet/doubletdoublet
Overlap geneLOC668915
Upstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor
Downstream geneLOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338J07.bB6Ng01-338J07.g
ACCGA122837GA122838
length997896
definitionB6Ng01-338J07.b B6Ng01-338J07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,182,900 - 143,183,895)(143,271,241 - 143,272,807)
sequence
gaattccctgaatgttaagttatttctgcacttctgacagttgcctgttg
ctttccttgtcaatataaattttcttgacagaggttccagccctgtctcc
atcttgctttcctaccccattttctgcccgttctttcctcatgcccatac
gattgccccaattacgctgcccactttcctttctctggtgatgtatcatt
agcggcatcatttctttctctttattttccttatacattgtaatgagcac
tttttctaccatttattaagacagaatataacagacatcacactgtctca
ttaactctgggtttttttttctacctttacaagcaaaatctcgcaatgtg
actgtaggtcctttggcaagggtcttagtttatatttcttcctccaatgc
ttcagatcatactgtcaaatatgtcagtgagttattgctgcagaacaaac
cagtcatttgatttagtttatgcttctatggattggcagtatgatctggt
ttcaacttacctgctcacctgggcttatttcagcttctgtatcctttctg
tgtccagtttctcctcatctgggcagaggtagctggttgctgatcataga
gagtagggtctcctcacactgcatcctaccactggttcatttccaaatgt
gtaataggttttcatgtttatactttccatcacattgaaagtcatgatca
agatcagaatcagcatgggaggagactaattggatggttttaaggaaggg
gagatattttacagtttaattcacaaatatattctgaattttctacaaat
atgtatctgctgacttgaaccacaaaactctaacaaaaaacaaaactcta
gctctcatagaagccatttaagatgcttttctagaaatctttcctttgtg
ggccatgttctacatttttagtctttcccacattctatttttgatttgtt
ctctctctctctctctctctctctctctctctctctctctctctctc
gaattctcctgcctctacttcctgttttgtagtaggattcctggaattac
aggtatatgttgtgtacctgattttatgtgggttgtgggggatggcagct
gaaaacctcaagcttttgcagggcttcccacactaagtagcattctcagc
ttagaatgtttgaagggtccacagaacttcacatttgagatttatcctgt
tagatatagatgcttgaatagaatgtctttggttgtaggttcaaatctgg
aggttacaggtgttgggtaacactttatttatacaatgaccgctagaaat
gatttatgtggcaggctctgtctcagacattggggatatattggtaaaga
aaacagaaaaatgctttgttatatagattttaatatctgaatcaaaagaa
acaggtaataaaaattgtgacaggtggtgtcagaaggtgataaggaaaaa
gcactactggagagtgggtaagttggggtatgaaagtaattttagaaaaa
gatggctgtcactgagaaggtgatgttgagaggaagccatggtgtgatct
gaggagaaaggaggagaaagcactccaaatagaggtgacaaaaacatgac
actgtttaggtagaaatacacagaacatacgtggctacccaaggagggtc
cataaggatcgaacagtggtaaacagtaaaaacagtacgaaaatgtgagg
ccaggggaaaacaaagagctaaatttgatatgaaaatatcagtcattgtt
taatttcttggctttaattccaaaataacaaaagattttgatatgtgaaa
agaccctgggctggttgctgtggtggaaatcacaagttggggctaaggca
gagaatgaatggtcaaattcctcacatggatgttcatttgcaatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143182900_143183895
seq2: B6Ng01-338J07.b_45_1041

seq1  GAATTCCCTGAATGTTAAGTTATTTCTGCACTTCTGACAGTTGCCTGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGAATGTTAAGTTATTTCTGCACTTCTGACAGTTGCCTGTTG  50

seq1  CTTTCCTTGTCAATATAAATTTTCTTGACAGAGGTTCCAGCCCTGTCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTGTCAATATAAATTTTCTTGACAGAGGTTCCAGCCCTGTCTCC  100

seq1  ATCTTGCTTTCCTACCCCATTTTCTGCCCGTTCTTTCCTCATGCCCATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCTTTCCTACCCCATTTTCTGCCCGTTCTTTCCTCATGCCCATAC  150

seq1  GATTGCCCCAATTACGCTGCCCACTTTCCTTTCTCTGGTGATGTATCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCCCAATTACGCTGCCCACTTTCCTTTCTCTGGTGATGTATCATT  200

seq1  AGCGGCATCATTTCTTTCTCTTTATTTTCCTTATACATTGTAATGAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGCATCATTTCTTTCTCTTTATTTTCCTTATACATTGTAATGAGCAC  250

seq1  TTTTTCTACCATTTATTAAGACAGAATATAACAGACATCACACTGTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTACCATTTATTAAGACAGAATATAACAGACATCACACTGTCTCA  300

seq1  TTAACTCTGGGTTTTTTTTTCTACCTTTACAAGCAAAATCTCGCAATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCTGGGTTTTTTTTTCTACCTTTACAAGCAAAATCTCGCAATGTG  350

seq1  ACTGTAGGTCCTTTGGCAAGGGTCTTAGTTTATATTTCTTCCTCCAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGGTCCTTTGGCAAGGGTCTTAGTTTATATTTCTTCCTCCAATGC  400

seq1  TTCAGATCATACTGTCAAATATGTCAGTGAGTTATTGCTGCAGAACAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATCATACTGTCAAATATGTCAGTGAGTTATTGCTGCAGAACAAAC  450

seq1  CAGTCATTTGATTTAGTTTATGCTTCTATGGATTGGCAGTATGATCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATTTGATTTAGTTTATGCTTCTATGGATTGGCAGTATGATCTGGT  500

seq1  TTCAACTTACCTGCTCACCTGGGCTTATTTCAGCTTCTGTATCCTTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTTACCTGCTCACCTGGGCTTATTTCAGCTTCTGTATCCTTTCTG  550

seq1  TGTCCAGTTTCTCCTCATCTGGGCAGAGGTAGCTGGTTGCTGATCATAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGTTTCTCCTCATCTGGGCAGAGGTAGCTGGTTGCTGATCATAGA  600

seq1  GAGTAGGGTCTCCTCACACTGCATCCTACCACTGGTTCATTTCCAAATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGGTCTCCTCACACTGCATCCTACCACTGGTTCATTTCCAAATGT  650

seq1  GTAATAGGTTTTCATGTTTATACTTTCCATCACATTGAAAGTCATGATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAGGTTTTCATGTTTATACTTTCCATCACATTGAAAGTCATGATCA  700

seq1  AGATCAGAATCAGCATGGGAGGAGACTAATTGGATGGTTTTAAGGAAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGAATCAGCATGGGAGGAGACTAATTGGATGGTTTTAAGGAAGGG  750

seq1  GAGATATTTTACAGTTTAATTCACAAATATATTCTGAATTTTCTACAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATTTTACAGTTTAATTCACAAATATATTCTGAATTTTCTACAAAT  800

seq1  ATGTATCTGCTGACTTGAACCACAAAACTCTAACAAAAAACAAAACTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCTGCTGACTTGAACCACAAAACTCTAACAAAAAACAAAACTCTA  850

seq1  GCTCTCATAGAAGCCATTTAAGATGCTTTTCTAGAAATCTTTCCTTTGT-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCTCTCATAGAAGCCATTTAAGATGCTTTTCTAGAAATCTTTCCTTTGTG  900

seq1  GGCCATGTTCTACATTTTTAGTCTTTCTCACATTCTATTTTTGATTTGTT  949
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGCCATGTTCTACATTTTTAGTCTTTCCCACATTCTATTTTTGATTTGTT  950

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  996
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  997

seq1: chr2_143271241_143272807
seq2: B6Ng01-338J07.g_69_964 (reverse)

seq1  TCATTGCAACTGACATCCATGTGAGAATCTGACCTTCATCTCTGCCTTAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCCCAACTTGTGATTTCCACCACAGCAACCAGCCCAGGTCTTTTCACATA  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCAAATCTTTTGTTATTTGGAATCCCAGTGTGACTGGCAATGATGATAAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  CATCACAAGCCCTTGGTTTACTACACCAGCTCCTGCATTTCCCCTGCTTT  200
                                                        
seq2  --------------------------------------------------  0

seq1  GTTTTAAATTCCCATACTCTACAGTTTTGTCAAACCTGTTTTCTCACACC  250
                                                        
seq2  --------------------------------------------------  0

seq1  CTGTTGACTTACTTTGTATACATCCATGGGCATAATCTTCAATATGGATT  300
                                                        
seq2  --------------------------------------------------  0

seq1  TCATTCCTTGATAGCTTCCATTTATTACATAGTTTTAATGCCCTGTGCAT  350
                                                        
seq2  --------------------------------------------------  0

seq1  GTTGCAGAGTAACACTTTCTACCACTATATCTCTACCTTGGACTTTAAGC  400
                                                        
seq2  --------------------------------------------------  0

seq1  CACCTCTCTATACTTTGATGAATAATGAGCATATCAAACCTTGACTCAGA  450
                                                        
seq2  --------------------------------------------------  0

seq1  TATTCAAAATTTGCCTTTTGATCCCCTGTTACTCTAAAAGAAAAAAGTCC  500
                                                        
seq2  --------------------------------------------------  0

seq1  TCTTAATTTTTCTCATCCATCCTTCCATTTTGCTCAGATTGAAATGTTTG  550
                                                        
seq2  --------------------------------------------------  0

seq1  ATTCATCTTTTCTCCCTTCAAGGTGCCAGCGACTTCTCTCAGCTTTGCCT  600
                                                        
seq2  --------------------------------------------------  0

seq1  TTAAAATCTATCCAGCACCTGTGTACCTGCCACGTCCTCAGTCACCTCCC  650
                                                        
seq2  --------------------------------------------------  0

seq1  CAGCCCAGGCTGCCGCCAGTACTCCCCAACATCATTGCAACTG-ACATCC  699
                                     ||||||||| || ||||||
seq2  -------------------------------TCATTGCAAATGAACATCC  19

seq1  ATGTGA-GAATCTGACC-TTCA-TCTCTGCCTTAGCCCCAACTTGTGATT  746
      |||||| |||| ||||| |||| |||||||||||||||||||||||||||
seq2  ATGTGAGGAATTTGACCATTCATTCTCTGCCTTAGCCCCAACTTGTGATT  69

seq1  TCCACCACAGCAACCAGCCCA-GGTCTTTTCACATATC-AAATCTTTTGT  794
      ||||||||||||||||||||| |||||||||||||||| |||||||||||
seq2  TCCACCACAGCAACCAGCCCAGGGTCTTTTCACATATCAAAATCTTTTGT  119

seq1  TA-TTTGGAATTAAAGCCAAGAAATT-AACAATGACTGATATTTTCATAT  842
      || ||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TATTTTGGAATTAAAGCCAAGAAATTAAACAATGACTGATATTTTCATAT  169

seq1  CAAATTTAGCTCCTTGTTTTCCCCTGGCCTCACATTTTCGTACTGTTTTC  892
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  CAAATTTAGCTCTTTGTTTTCCCCTGGCCTCACATTTTCGTACTGTTTT-  218

seq1  TACTGTTTACCACTGTTCGATCCTTATGGA-CCTCCTT-GGTAGCCACGT  940
      |||||||||||||||||||||||||||||| ||||||| |||||||||||
seq2  TACTGTTTACCACTGTTCGATCCTTATGGACCCTCCTTGGGTAGCCACGT  268

seq1  ATGTTCTGTGTATTTCTACCT-AACAGTGTCATGTTTTTGTCACCTCTAT  989
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATGTTCTGTGTATTTCTACCTAAACAGTGTCATGTTTTTGTCACCTCTAT  318

seq1  TTGGAGTGCTTTCTCCTCCTTTCTCCTCAGATCACACCATGGCTTCCTCT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTGCTTTCTCCTCCTTTCTCCTCAGATCACACCATGGCTTCCTCT  368

seq1  CAACATCACCTTCTCAGTGACAGCCATCTTTTTCTAAAATTACTTTCATA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCACCTTCTCAGTGACAGCCATCTTTTTCTAAAATTACTTTCATA  418

seq1  CCCCAACTTACCCACTCTCCAGTAGTGCTTTTTCCTTATCACCTTCTGAC  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACTTACCCACTCTCCAGTAGTGCTTTTTCCTTATCACCTTCTGAC  468

seq1  ACCACCTGTCACAATTTTTATTACCTGTTTCTTTTGATTCAGATATTAAA  1189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTGTCACAATTTTTATTACCTGTTTCTTTTGATTCAGATATTAAA  518

seq1  ATCTATATAACAAAGCATTTTTCTGTTTTCTTTACCAATATATCCCCAAT  1239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATATAACAAAGCATTTTTCTGTTTTCTTTACCAATATATCCCCAAT  568

seq1  GTCTGAGACAGAGCCTGCCACATAAATCATTTCTAGCGGTCATTGTATAA  1289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGACAGAGCCTGCCACATAAATCATTTCTAGCGGTCATTGTATAA  618

seq1  ATAAAGTGTTACCCAACACCTGTAACCTCCAGATTTGAACCTACAACCAA  1339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTGTTACCCAACACCTGTAACCTCCAGATTTGAACCTACAACCAA  668

seq1  AGACATTCTATTCAAGCATCTATATCTAACAGGATAAATCTCAAATGTGA  1389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTCTATTCAAGCATCTATATCTAACAGGATAAATCTCAAATGTGA  718

seq1  AGTTCTGTGGACCCTTCAAACATTCTAAGCTGAGAATGCTACTTAGTGTG  1439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGTGGACCCTTCAAACATTCTAAGCTGAGAATGCTACTTAGTGTG  768

seq1  GGAAGCCCTGCAAAAGCTTGAGGTTTTCAGCTGCCATCCCCCACAACCCA  1489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCCTGCAAAAGCTTGAGGTTTTCAGCTGCCATCCCCCACAACCCA  818

seq1  CATAAAATCAGGTACACAACATATACCTGTAATTCCAGGAATCCTACTAC  1539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATCAGGTACACAACATATACCTGTAATTCCAGGAATCCTACTAC  868

seq1  AAAACAGGAAGTAGAGGCAGGAGAATTC  1567
      ||||||||||||||||||||||||||||
seq2  AAAACAGGAAGTAGAGGCAGGAGAATTC  896