BAC Information

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BAC

Clone NameB6Ng01-338M19
Chromosome2 (Build37)
Map Location 34,820,894 - 34,988,812
singlet/doubletdoublet
Overlap geneHc, AI182371
Upstream genePbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1
Downstream geneRab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338M19.bB6Ng01-338M19.g
ACCGA122980GA122981
length1,172699
definitionB6Ng01-338M19.b B6Ng01-338M19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,987,642 - 34,988,812)(34,820,894 - 34,821,589)
sequence
gaattcatttgtagggccctgggaggcataccccttacactctccgcgct
ctggcccacacaccctcttgttcctgtgccctgacaattatgatatcatg
gagccactgctaagtgacaggaatgtattatctcccccaggtgtgctgag
gaaaacagagagcaaatgatctagtctaaccttccacttcagaaatgtaa
gcctgaatctcacgtcaatcaaatgtcttgactggtttccttaggcaaca
gttcatttggagacaaaataattcccgagagagacatctgccttccttcc
cctcaaggctcccaagactccaaccttatccaagaggatcagaagaacag
aacaataactgagggaaaactcattaggagaacagttagagcccgagcaa
caagtgctactgtttccaagcctaagacatgttagcttctacaagaaaga
gcttagtttgagaggtaccccccccccctcaaatggggagcaaatgagtg
gccaccgccacctttgaggccagctgttattttacaggtggtagatttga
cggggtgttcgaatcaccttttcccactccccacatacccatcttaaatc
tttcctacaacagttactgtaggtaggtaagagtttatatcctaatagta
caccaaacacttttgtggctcaagaatgaacaaaaattctactgtcctct
taatcaacagcttaaaattcgctgttaaaagtgcactgcaacctctatac
gcagggcaaacatgtggttcagaagacggcactgctgtgtgtgaaacacg
cggcgccacggccgttcctgcggttcttctgcagcggtggagctcacaaa
agagttactgtgaacaaacaggaacttacagatctggctcctcctccgtc
caagccctttctttatacacagaggaacgaccataccttaactccgaatc
tttcctgttatgacagagccgtggggaacaaaaacaggctgcgcaaagct
ttctagtctgtcttcaaattcatgtgcaacttccttctctgacagccaca
tcttggcaagcgcctctcgtgcccagtactcccagcgccctcaaactatg
gcctaggtcaggcatgagtgacagcggagctagtccagtcaccagcaggc
tctgtgtgatcaggcccgcctg
cgcggaattctctctgtgcctagcctgcctctgcagtccccgcccactcg
ctcctctcctcccctcccctcccccggcacgcccaccttcacttcctgta
cttcacgacagagttgctacaaggaagactttacactggcctggttcacc
agccttctgctccagcctggaacactggggtctgtggtcgtggtaaacgt
atagcaaagagaataagcggctccctataatttgatgtcagtcatggctc
tgaacgagtcttgttgtctttagaaaactgaggccttgaggtacataatt
aggctcaggtcaaacagccagtgattggcagccttgggaagggtaggcat
ctgccctagatacttgtgcttttctactgtgatcccagacaaagccaaat
tcaaacctgaccatgttctcccgctttgggcctggagtggcaaagttaca
ggatggaaattatgcttcctctgacactttgcatgccgacatcatgaggg
cgacggttgggaactgtggggccacctgactccgcatccctaacacacca
gcctttctgcagcttaactcttgacatttccttcgcagactgcagaccct
gaatcacttatccacatttccactttagagggcgcttttgagagcacagc
cagcctccccccaaacaccccctcaagacacagctccactgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_34987642_34988812
seq2: B6Ng01-338M19.b_47_1218 (reverse)

seq1  CAGGCGGGGCCTGA--CCACAGAGACTGCTGGTGACTGGACTAGCT-CGC  47
      ||||| ||||||||   ||||||| ||||||||||||||||||||| |||
seq2  CAGGC-GGGCCTGATCACACAGAGCCTGCTGGTGACTGGACTAGCTCCGC  49

seq1  TGTCACTCATGCTTGA-CTAGGCCCATAGTTTGA-GGCGCTGGGAAGTTA  95
      |||||||||||| ||| ||||| ||||||||||| ||||||||||   ||
seq2  TGTCACTCATGCCTGACCTAGG-CCATAGTTTGAGGGCGCTGGGA--GTA  96

seq1  CTTGGGCACG-GAGGCGCTTGCCAAGATGTGGCTGTCAGAGAGGGAAG-T  143
      | |||||||| ||||||||||||||||||||||||||||||| ||||| |
seq2  C-TGGGCACGAGAGGCGCTTGCCAAGATGTGGCTGTCAGAGAAGGAAGTT  145

seq1  GCACATGAATTTGAAGACAGACTTAGAAAGCTTTGCGCAGCCTGTTTTTG  193
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCACATGAATTTGAAGACAGAC-TAGAAAGCTTTGCGCAGCCTGTTTTTG  194

seq1  TTCCCCACGGCTCTGTCATAACAGGAAAGATTCGGAGTTAAGGTATGGTC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCACGGCTCTGTCATAACAGGAAAGATTCGGAGTTAAGGTATGGTC  244

seq1  GTTCCTCTGTGTATAAAGAAAGGGCTTGGACGGAGGAGGAGCCAGATCTG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCTGTGTATAAAGAAAGGGCTTGGACGGAGGAGGAGCCAGATCTG  294

seq1  TAAGTTCCTGTTTGTTCACAGTAACTCTTTTGTGAGCTCCACCGCTGCAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCCTGTTTGTTCACAGTAACTCTTTTGTGAGCTCCACCGCTGCAG  344

seq1  AAGAACCGCAGGAACGGCCGTGGCGCCGCGTGTTTCACACACAGCAGTGC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCGCAGGAACGGCCGTGGCGCCGCGTGTTTCACACACAGCAGTGC  394

seq1  CGTCTTCTGAACCACATGTTTGCCCTGCGTATAGAGGTTGCAGTGCACTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTCTGAACCACATGTTTGCCCTGCGTATAGAGGTTGCAGTGCACTT  444

seq1  TTAACAGCGAATTTTAAGCTGTTGATTAAGAGGACAGTAGAATTTTTGTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGCGAATTTTAAGCTGTTGATTAAGAGGACAGTAGAATTTTTGTT  494

seq1  CATTCTTGAGCCACAAAAGTGTTTGGTGTACTATTAGGATATAAACTCTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTGAGCCACAAAAGTGTTTGGTGTACTATTAGGATATAAACTCTT  544

seq1  ACCTACCTACAGTAACTGTTGTAGGAAAGATTTAAGATGGGTATGTGGGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACCTACAGTAACTGTTGTAGGAAAGATTTAAGATGGGTATGTGGGG  594

seq1  AGTGGGAAAAGGTGATTCGAACACCCCGTCAAATCTACCACCTGTAAAAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAAAAGGTGATTCGAACACCCCGTCAAATCTACCACCTGTAAAAT  644

seq1  AACAGCTGGCCTCAAAGGTGGCGGTGGCCACTCATTTGCTCCCCATTTGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTGGCCTCAAAGGTGGCGGTGGCCACTCATTTGCTCCCCATTTGA  694

seq1  GGGGGGGGGGGTACCTCTCAAACTAAGCTCTTTCTTGTAGAAGCTAACAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGGGTACCTCTCAAACTAAGCTCTTTCTTGTAGAAGCTAACAT  744

seq1  GTCTTAGGCTTGGAAACAGTAGCACTTGTTGCTCGGGCTCTAACTGTTCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGGCTTGGAAACAGTAGCACTTGTTGCTCGGGCTCTAACTGTTCT  794

seq1  CCTAATGAGTTTTCCCTCAGTTATTGTTCTGTTCTTCTGATCCTCTTGGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATGAGTTTTCCCTCAGTTATTGTTCTGTTCTTCTGATCCTCTTGGA  844

seq1  TAAGGTTGGAGTCTTGGGAGCCTTGAGGGGAAGGAAGGCAGATGTCTCTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTGGAGTCTTGGGAGCCTTGAGGGGAAGGAAGGCAGATGTCTCTC  894

seq1  TCGGGAATTATTTTGTCTCCAAATGAACTGTTGCCTAAGGAAACCAGTCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGAATTATTTTGTCTCCAAATGAACTGTTGCCTAAGGAAACCAGTCA  944

seq1  AGACATTTGATTGACGTGAGATTCAGGCTTACATTTCTGAAGTGGAAGGT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTGATTGACGTGAGATTCAGGCTTACATTTCTGAAGTGGAAGGT  994

seq1  TAGACTAGATCATTTGCTCTCTGTTTTCCTCAGCACACCTGGGGGAGATA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTAGATCATTTGCTCTCTGTTTTCCTCAGCACACCTGGGGGAGATA  1044

seq1  ATACATTCCTGTCACTTAGCAGTGGCTCCATGATATCATAATTGTCAGGG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTCCTGTCACTTAGCAGTGGCTCCATGATATCATAATTGTCAGGG  1094

seq1  CACAGGAACAAGAGGGTGTGTGGGCCAGAGCGCGGAGAGTGTAAGGGGTA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAACAAGAGGGTGTGTGGGCCAGAGCGCGGAGAGTGTAAGGGGTA  1144

seq1  TGCCTCCCAGGGCCCTACAAATGAATTC  1171
      ||||||||||||||||||||||||||||
seq2  TGCCTCCCAGGGCCCTACAAATGAATTC  1172

seq1: chr2_34820894_34821589
seq2: B6Ng01-338M19.g_65_760

seq1  GGAATTCTCTCTGTGCCTAGCCTGCCTCTGCAGTCCCCGCCCACTCGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCTCTCTGTGCCTAGCCTGCCTCTGCAGTCCCCGCCCACTCGCTC  50

seq1  CTCTCCTCCCCTCCCCTCCCCCGGCACGCCCACCTTCACTTCCTGTACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCCCCTCCCCTCCCCCGGCACGCCCACCTTCACTTCCTGTACTT  100

seq1  CACGACAGAGTTGCTACAAGGAAGACTTTACACTGGCCTGGTTCACCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGACAGAGTTGCTACAAGGAAGACTTTACACTGGCCTGGTTCACCAGC  150

seq1  CTTCTGCTCCAGCCTGGAACACTGGGGTCTGTGGTCGTGGTAAACGTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTCCAGCCTGGAACACTGGGGTCTGTGGTCGTGGTAAACGTATA  200

seq1  GCAAAGAGAATAAGCGGCTCCCTATAATTTGATGTCAGTCATGGCTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAGAATAAGCGGCTCCCTATAATTTGATGTCAGTCATGGCTCTGA  250

seq1  ACGAGTCTTGTTGTCTTTAGAAAACTGAGGCCTTGAGGTACATAATTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGTCTTGTTGTCTTTAGAAAACTGAGGCCTTGAGGTACATAATTAGG  300

seq1  CTCAGGTCAAACAGCCAGTGATTGGCAGCCTTGGGAAGGGTAGGCATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTCAAACAGCCAGTGATTGGCAGCCTTGGGAAGGGTAGGCATCTG  350

seq1  CCCTAGATACTTGTGCTTTTCTACTGTGATCCCAGACAAAGCCAAATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGATACTTGTGCTTTTCTACTGTGATCCCAGACAAAGCCAAATTCA  400

seq1  AACCTGACCATGTTCTCCCGCTTTGGGCCTGGAGTGGCAAAGTTACAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGACCATGTTCTCCCGCTTTGGGCCTGGAGTGGCAAAGTTACAGGA  450

seq1  TGGAAATTATGCTTCCTCTGACACTTTGCATGCCGACATCATGAGGGCGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATTATGCTTCCTCTGACACTTTGCATGCCGACATCATGAGGGCGA  500

seq1  CGGTTGGGAACTGTGGGGCCACCTGACTCCGCATCCCTAACACACCAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTGGGAACTGTGGGGCCACCTGACTCCGCATCCCTAACACACCAGCC  550

seq1  TTTCTGCAGCTTAACTCTTGACATTTCCTTCGCAGACTGCAGACCCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCAGCTTAACTCTTGACATTTCCTTCGCAGACTGCAGACCCTGAA  600

seq1  TCACTTATCCACATTTCCACTTTAGAGGGCGCTTTTGAGAGCACAGCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTATCCACATTTCCACTTTAGAGGGCGCTTTTGAGAGCACAGCCAG  650

seq1  CCTCCCCCCAAACACCCCCTCAAGACACAGCTCCACTGTGTGTGTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCCCAAACACCCCCTCAAGACACAGCTCCACTGTGTGTGTG  696