BAC Information

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BAC

Clone NameB6Ng01-338N13
Chromosome2 (Build37)
Map Location 126,927,961 - 126,929,147
singlet/doubletsinglet
Overlap genenone
Upstream geneDtwd1, Atp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra
Downstream geneNcaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338N13.bB6Ng01-338N13.g
ACCGA123012GA123013
length1,1871,231
definitionB6Ng01-338N13.b B6Ng01-338N13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatcaagtaggagagggccacatggggagaaggcatcggaatgcc
aacttaatctaaaactgccctctgctcattaagatatgcagctctacctg
cacacttatatttaagaagtgtccttgtctcttgagttgttttaaatgta
ttataagtgagtgtttgacttgtgtgttatatcctatataccgattgtaa
aaatgtcttggacaaaaaggtaccataaatgggagaaacataagatgtcc
tgctatagagaagtgatagctgaggagaagaaggcttggccaatcaaagc
gagagactaaaagctgagccaggactggtacctcctgatgtgggaaacac
tcgcccactgcacagggccagactgctcctacgaaattatattcataatc
tccgaaaccttgtgatggagcagaggaaagcagacactactttgaacatg
atttagaaagcatgttagggggtgtggttctttcccttgcactgagagga
gggaggttcatggtacctgactcatgtgccctgccacacataaacaggac
aactgctagagactgctggagctgcctgaagtgagcaggagcagcaggga
ggccctgtaagtggtcatccatgctcgggcaggctcaggaggtagctgcc
tttgtcactcatgctcccatcagcggacactcactgcttcaccaagctgg
acactatttctttgtctagcatctggatgaacaggaagccacagaggaag
gaactgccctttgtttgggcttagagcaatttataagtaagaattaccaa
ttgcaccaggcgtggtggcgcatgcctttaattccagcactctggaggca
gaggcaggcggatttctgagttcgaggccagcctggtctacaaagtgaat
tccaggacagccagggctacacagagaaatcctgttttgaaaaacaaaaa
gaattaccaattgcactcttgcttcttgtccatcatccaggtgctgacag
gacaatgagtgacaggacccaaggcacactgcagccatctgacgctcatt
tccccaaagtatgagaagaaattttatatctgggagccatgaattctgtt
aggctgatgacgttcctagccctgcatgtgaacctagaagacacgaaggc
aggccacagccgttcgaaacttgctctggtgatctgg
gaattcaggtgaagatgatcaagctagaggtaggtaggtgaatattcctg
aagactaagtatatttctttttagaaaaagttcatgctatagactctcaa
tcaaatttgttgaatggtgaagctcaagctatagcaacagctacagtgac
aaccctgcactctccaggcctagggatctagcaggtgcatcaggcaagag
caaggccatgtgtccctttggtcccaagtaggtctattcacatcaactca
gatccagcgagttggtcatggatagagaaatgtatgaagactccatccag
gagctccaagatacaagaacataacaactcaaagaaaacgactgagaatt
gtttaagctaattaagttagattttctccatgttttgtacccaccttgaa
ctgtggaggaattgatattgatacaaacagatgaattcattccatgctgt
gtttgatattgcttatgttcaactttagtatcttcttaattgtgaacatc
tgggatcacctgacacttgcataaaacagatgaaacagactttttgagtg
cttcaattgcatcatctttgtaatcccaccatttgttatggggtggtgct
ttaggacattgctgtgtactgtccagtctctgataaaagttttgttacat
ggataacacaatgctcagcttcgagtgttttgcagatttgacaagccatt
agagagacacccaggtacaatggtacttctgcctacttcagagtcctacc
aggggcataattgaaaggaaaaggtacaaaagggagcctacttgtgtgaa
cagtgatacttccagaaggctcatggtaactaaatgaaaaccccactgca
tggatgggctgcctacctgagagttgatggctgtggaaaccctagagccc
ccacaaaccataaattctattgctatacttgctggttgtatgccagaact
agaagtaagactgtgcttgctgcttgctgagacgtgcttgggcctgacct
tcacataataggacttgcttcaattaagctggaacagaactagaagctcc
accttgctgaactgtattcaatagtgtcagaggatacccatgaaggtttg
cttgtaagacctgtcacccccacatttctgctttactctatgggaactgg
aattgctaacaacttgacatttccggacagaattgtgagagagatgtatc
tcctcctcctactattctaacgtaggattag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_126927961_126929147
seq2: B6Ng01-338N13.b_45_1231

seq1  GAATTCATCAAGTAGGAGAGGGCCACATGGGGAGAAGGCATCGGAATGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAAGTAGGAGAGGGCCACATGGGGAGAAGGCATCGGAATGCC  50

seq1  AACTTAATCTAAAACTGCCCTCTGCTCATTAAGATATGCAGCTCTACCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAATCTAAAACTGCCCTCTGCTCATTAAGATATGCAGCTCTACCTG  100

seq1  CACACTTATATTTAAGAAGTGTCCTTGTCTCTTGAGTTGTTTTAAATGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTATATTTAAGAAGTGTCCTTGTCTCTTGAGTTGTTTTAAATGTA  150

seq1  TTATAAGTGAGTGTTTGACTTGTGTGTTATATCCTATATACCGATTGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGTGAGTGTTTGACTTGTGTGTTATATCCTATATACCGATTGTAA  200

seq1  AAATGTCTTGGACAAAAAGGTACCATAAATGGGAGAAACATAAGATGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCTTGGACAAAAAGGTACCATAAATGGGAGAAACATAAGATGTCC  250

seq1  TGCTATAGAGAAGTGATAGCTGAGGAGAAGAAGGCTTGGCCAATCAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATAGAGAAGTGATAGCTGAGGAGAAGAAGGCTTGGCCAATCAAAGC  300

seq1  GAGAGACTAAAAGCTGAGCCAGGACTGGTACCTCCTGATGTGGGAAACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACTAAAAGCTGAGCCAGGACTGGTACCTCCTGATGTGGGAAACAC  350

seq1  TCGCCCACTGCACAGGGCCAGACTGCTCCTACGAAATTATATTCATAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCCACTGCACAGGGCCAGACTGCTCCTACGAAATTATATTCATAATC  400

seq1  TCCGAAACCTTGTGATGGAGCAGAGGAAAGCAGACACTACTTTGAACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAAACCTTGTGATGGAGCAGAGGAAAGCAGACACTACTTTGAACATG  450

seq1  ATTTAGAAAGCATGTTAGGGGGTGTGGTTCTTTCCCTTGCACTGAGAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAAAGCATGTTAGGGGGTGTGGTTCTTTCCCTTGCACTGAGAGGA  500

seq1  GGGAGGTTCATGGTACCTGACTCATGTGCCCTGCCACACATAAACAGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTTCATGGTACCTGACTCATGTGCCCTGCCACACATAAACAGGAC  550

seq1  AACTGCTAGAGACTGCTGGAGCTGCCTGAAGTGAGCAGGAGCAGCAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTAGAGACTGCTGGAGCTGCCTGAAGTGAGCAGGAGCAGCAGGGA  600

seq1  GGCCCTGTAAGTGGTCATCCATGCTCGGGCAGGCTCAGGAGGTAGCTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGTAAGTGGTCATCCATGCTCGGGCAGGCTCAGGAGGTAGCTGCC  650

seq1  TTTGTCACTCATGCTCCCATCAGCGGACACTCACTGCTTCACCAAGCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCACTCATGCTCCCATCAGCGGACACTCACTGCTTCACCAAGCTGG  700

seq1  ACACTATTTCTTTGTCTAGCATCTGGATGAACAGGAAGCCACAGAGGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATTTCTTTGTCTAGCATCTGGATGAACAGGAAGCCACAGAGGAAG  750

seq1  GAACTGCCCTTTGTTTGGGCTTAGAGCAATTTATAAGTAAGAATTACCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCCCTTTGTTTGGGCTTAGAGCAATTTATAAGTAAGAATTACCAA  800

seq1  TTGCACCAGGCGTGGTGGCGCATGCCTTTAATTCCAGCACTCTGGAGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACCAGGCGTGGTGGCGCATGCCTTTAATTCCAGCACTCTGGAGGCA  850

seq1  GAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAAT  900

seq1  TCCAGGACAGCCAGGGCTACACAGAGAAATCCTGTTTTGAAAAACAAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGACAGCCAGGGCTACACAGAGAAATCCTGTTTTGAAAAACAAAAA  950

seq1  GAATTACCAATTGCACTCTTGCTTCTTGTCCATCATCCCAGGTGCTGACC  1000
      |||||||||||||||||||||||||||||||||||| ||||||||||| |
seq2  GAATTACCAATTGCACTCTTGCTTCTTGTCCATCAT-CCAGGTGCTGA-C  998

seq1  AGGACAATGAGTGACAGGGACCCAAGGCACACTGCAAGCCATCCTGACGC  1050
      |||||||||||||||| |||||||||||||||||| |||||| |||||||
seq2  AGGACAATGAGTGACA-GGACCCAAGGCACACTGC-AGCCAT-CTGACGC  1045

seq1  TCATTTCCCCAAGGTATGAGAAGACATTTTATATCTGGGAG-CATGAATT  1099
      |||||||||||| ||||||||||| |||||||||||||||| ||||||||
seq2  TCATTTCCCCAAAGTATGAGAAGAAATTTTATATCTGGGAGCCATGAATT  1095

seq1  CTGTAGGGCTGGATGA-GGTCCTAGCCCTGCAGTGTGGAGCTAGAAGACA  1148
      ||||  |||| ||||| | ||||||||||||| |||| | ||||||||||
seq2  CTGTTAGGCT-GATGACGTTCCTAGCCCTGCA-TGTGAACCTAGAAGACA  1143

seq1  -GAAGGCAGGCAACAGGCGTCCG-AACTTG--CTGGTGA-CTGG  1187
       |||||||||| |||| ||| || ||||||  ||||||| ||||
seq2  CGAAGGCAGGCCACAGCCGTTCGAAACTTGCTCTGGTGATCTGG  1187