BAC Information

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BAC

Clone NameB6Ng01-340J02
Chromosome2 (Build37)
Map Location 63,351,540 - 63,535,011
singlet/doubletdoublet
Overlap geneEG667257
Upstream geneFap, Ifih1, Gca, Kcnh7
Downstream geneFign, LOC620544
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340J02.bB6Ng01-340J02.g
ACCGA124227GA124228
length1,1881,092
definitionB6Ng01-340J02.b B6Ng01-340J02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,351,540 - 63,352,766)(63,533,898 - 63,535,011)
sequence
gaattcacctcatctcaatacctctttcgatggcaactggctaaaaccca
agttagtaaaatacactaaagtccaaccaagtgagcataaaaattgacta
gtggagaaccattttaaaatatttatgtggttattgtttcagtatctcag
cttctttttcaaagttagcttaaaatgttctatgtttacttatatatata
tagtctggcatctccaaaaatttaataattaaaaacaaagcacaaaaaca
gatcctcaacacaagggggcactgtttaccaatctcttaggaatagactt
gggttgaaacattttctatttgagttctcaaagactaatttttaattcat
ccctcttaattttatatctgatttttcattgcaaatctggtaattaatag
ggaaatggaatttttaattaaaatgaaaatgcaaatttggagcttaaaat
ggattttgtgtgtgagtgtgtaattagtaatcaaaaatttaatctatctg
catctatactctatgccattgtatacatatactaccctacccttctccaa
tatgggctacattcacaatgtcctttcttcttgtcatctcatgagtgtac
tccttgttcttatttgcatagaatttaattcttgcttgttaagttcatca
aacatataactatacatatcatttccatgagagatcattttctagcaaac
gagatggctcatctaataaaggcacttttgtcaaaccttacttactacct
ttgttcaatatcaggaacgtacaaggtaacaagggggatatgactcctgc
aaattatcctctgatcacgacacccacactggaaaacagaaaatattact
taaaatacaatgctgtggtcttaaaggtgtaagtcatagctctacccaac
aagtaaactatttttcattgaataaacatctggagtagacatctatttca
tcatttaattctgtaatctaattgtatataataaccaagacactgttata
cataatactatagtacacttacacacatgtgaaaacacattcaaagtcta
tatttttgtatcagttataattctaaatatctgtaaatacctttttgtat
tttaggtgagttcaaagtgaagtatgctttgaaggccagtataagaatca
cctctgcactcaaatcttactgactgctaccatcaaag
gaattctggaaaattgcctttccttaaaaaaaaaaaaaaaaaaaaaaaca
gtaacagagcatgacacaaacatttaataaagggatggttgtagacttcc
ttcattcctgtgaaccaacaaaaatctctccagggacagatcattaaatc
gtcctcggtgtgaacgcaaacagcatctcaggaggcgtttctgaaggtgt
gaggcttttattaggagcatgtttagaaagctcgactgttttctcaaaaa
tcactcctgcagaaaataatggaatagttaccaaccatttctgaaagctg
tataatggaagagattcagttcattagaaaaatagtaaattataagtggt
aaagcctgagaaggagtaagttttggggagaatacataaattaaatatga
aaagcataatgcagccatcagatatcatttggtatgtattaccttattat
tttgtatatgtgttgagatctagcaatttaccacggtattatttaatact
tcactttacatggagtaaagagaaaaaggaaagaaaaatatagaataaaa
atgtccacaacatgctgccttcttattctaacttcttaaaaattttgcat
tgttagttaagtcttctgacattcataacatcagccaagttcagaatcct
tcattagccataattaattcccattacttttttttcttccaggaaggatt
actactaaaaccgtgatttctttcccaaaccttaatttttccttgaccca
gtaatttacatttatttcaatgattccagagaacaagcccggcgcagttc
atgtgcatcgatccagatttaggaagtattttcaccatcagtttcatttg
tttctcttaagggtcctattttgctatggatagcattttcttttcataga
gatttgtctgacttttaaagaagtgtgatttagaattagttcagatcaca
tcatattagaaaatacattttaaaataatctgaagactcatagtctgtca
ctctcatcagccatttacttttcatgttatagcatatgatgagtctgaac
atctacccttcagaactgcatgtcagcttttttcccaggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_63351540_63352766
seq2: B6Ng01-340J02.b_43_1230

seq1  GAATTCACCTCATCTCAATACCTCTTTCGATGGCAACTGGCTAAAACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTCATCTCAATACCTCTTTCGATGGCAACTGGCTAAAACCCA  50

seq1  AGTTAGTAAAATACACTAAAGTCCAACCAAGTGAGCATAAAAATTGACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTAAAATACACTAAAGTCCAACCAAGTGAGCATAAAAATTGACTA  100

seq1  GTGGAGAACCATTTTAAAATATTTATGTGGTTATTGTTTCAGTATCTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAACCATTTTAAAATATTTATGTGGTTATTGTTTCAGTATCTCAG  150

seq1  CTTCTTTTTCAAAGTTAGCTTAAAATGTTCTATGTTTACTTATATATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTTCAAAGTTAGCTTAAAATGTTCTATGTTTACTTATATATATA  200

seq1  TAGTCTGGCATCTCCAAAAATTTAATAATTAAAAACAAAGCACAAAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGGCATCTCCAAAAATTTAATAATTAAAAACAAAGCACAAAAACA  250

seq1  GATCCTCAACACAAGGGGGCACTGTTTACCAATCTCTTAGGAATAGACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCAACACAAGGGGGCACTGTTTACCAATCTCTTAGGAATAGACTT  300

seq1  GGGTTGAAACATTTTCTATTTGAGTTCTCAAAGACTAATTTTTAATTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGAAACATTTTCTATTTGAGTTCTCAAAGACTAATTTTTAATTCAT  350

seq1  CCCTCTTAATTTTATATCTGATTTTTCATTGCAAATCTGGTAATTAATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTAATTTTATATCTGATTTTTCATTGCAAATCTGGTAATTAATAG  400

seq1  GGAAATGGAATTTTTAATTAAAATGAAAATGCAAATTTGGAGCTTAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGGAATTTTTAATTAAAATGAAAATGCAAATTTGGAGCTTAAAAT  450

seq1  GGATTTTGTGTGTGAGTGTGTAATTAGTAATCAAAAATTTAATCTATCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTGTGTGTGAGTGTGTAATTAGTAATCAAAAATTTAATCTATCTG  500

seq1  CATCTATACTCTATGCCATTGTATACATATACTACCCTACCCTTCTCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATACTCTATGCCATTGTATACATATACTACCCTACCCTTCTCCAA  550

seq1  TATGGGCTACATTCACAATGTCCTTTCTTCTTGTCATCTCATGAGTGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGCTACATTCACAATGTCCTTTCTTCTTGTCATCTCATGAGTGTAC  600

seq1  TCCTTGTTCTTATTTGCATAGAATTTAATTCTTGCTTGTTAAGTTCATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTTCTTATTTGCATAGAATTTAATTCTTGCTTGTTAAGTTCATCA  650

seq1  AACATATAACTATACATATCATTTCCATGAGAGATCATTTTCTAGCAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATAACTATACATATCATTTCCATGAGAGATCATTTTCTAGCAAAC  700

seq1  GAGATGGCTCATCTAATAAAGGCACTTTTGTCAAACCTTACTTACTACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTCATCTAATAAAGGCACTTTTGTCAAACCTTACTTACTACCT  750

seq1  TTGTTCAATATCAGGAACGTACAAGGTAACAAGGGGGATATGACTCCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAATATCAGGAACGTACAAGGTAACAAGGGGGATATGACTCCTGC  800

seq1  AAATTATCCTCTGATCACGACACCCACACTGGAAAACAGAAAATATTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATCCTCTGATCACGACACCCACACTGGAAAACAGAAAATATTACT  850

seq1  TAAAATACAATGCTGTGGTCTTAAAGGTGTAAGTCATAGCTCTACCCAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACAATGCTGTGGTCTTAAAGGTGTAAGTCATAGCTCTACCCAAC  900

seq1  AAGTAAACTATTTTTCATTGAATAAACATCTGGAGTAGACATCTTATTTC  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAGTAAACTATTTTTCATTGAATAAACATCTGGAGTAGACATC-TATTTC  949

seq1  ATTCATTTAATTCTGTAATCTAATTGTATATAATAACCAAGACACTGTTA  1000
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TCATTTAATTCTGTAATCTAATTGTATATAATAACCAAGACACTGTTA  998

seq1  TACAT-ATACTATAGTACACTTACACACATGTGAAAACACATTCAAAGTC  1049
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATACTATAGTACACTTACACACATGTGAAAACACATTCAAAGTC  1048

seq1  TATA-TTTTGTATCAGGTTTATAAATTCTAAATATCTGTAAAATACTTTT  1098
      |||| |||||||||||  |||| |||||||||||||||| |||||| |||
seq2  TATATTTTTGTATCAG--TTAT-AATTCTAAATATCTGT-AAATACCTTT  1094

seq1  TTGTATTTTATGTGAGTTTCAAAGTGAAGTATGCTTGAAAGCACAGTATA  1148
      |||||||||| ||||| |||||||||||||||||||  |||  |||||||
seq2  TTGTATTTTAGGTGAG-TTCAAAGTGAAGTATGCTTTGAAGGCCAGTATA  1143

seq1  AGATTCACTCCTGCACTCAATTCTTACTGAGTTGCTTAACCATC-AAGAG  1197
      ||| ||||  |||||||||| |||||||||  ||||  |||||| |||  
seq2  AGAATCACCTCTGCACTCAAATCTTACTGA-CTGCT--ACCATCAAAG--  1188

seq1  CATTCAAAAGAATACTGGGGACCATCAAAG  1227
                                    
seq2  ------------------------------  1188

seq1: chr2_63533898_63535011
seq2: B6Ng01-340J02.g_62_1153 (reverse)

seq1  ACACCTTGGGAAAAAAAGCTGACATGACCAGGGTCTAGAAGGGTAGATGT  50
      ||||||  || |||||||||||||||  || | ||| |||||||||||||
seq2  ACACCT--GGGAAAAAAGCTGACATG--CA-GTTCT-GAAGGGTAGATGT  44

seq1  TCAGACTCAATTCATATGTGCTTATAAACATTGAAAAGTAAATGGGCTGA  100
      |||||||||  |||||||    ||| |||| |||||||||||| ||||| 
seq2  TCAGACTCA--TCATATG---CTAT-AACA-TGAAAAGTAAAT-GGCTG-  85

seq1  ATGAAGAAGTGACAGACTATGAGTCTCAAGATTTATTTTTAAAATGTATT  150
      ||||   |||||||||||||||||||  |||||   ||||||||||||||
seq2  ATGA--GAGTGACAGACTATGAGTCTTCAGATT--ATTTTAAAATGTATT  131

seq1  TTCTAATATGAATGTGATCTTGAACTAATTCTTAAATCACACTTCTTTAA  200
      |||||||||| |||||||| ||||||||||| ||||||||||||||||||
seq2  TTCTAATATG-ATGTGATC-TGAACTAATTC-TAAATCACACTTCTTTAA  178

seq1  AAGTCAGACAAATCTCTATGAAAAGAAAATGCTATCCATAGCAAAATAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGACAAATCTCTATGAAAAGAAAATGCTATCCATAGCAAAATAGG  228

seq1  ACCCTTAAGAGAAACAAATGAAACTGATGGTGAAAATACTTCCTAAATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTAAGAGAAACAAATGAAACTGATGGTGAAAATACTTCCTAAATCT  278

seq1  GGATCGATGCACATGAACTGCGCCGGGCTTGTTCTCTGGAATCATTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCGATGCACATGAACTGCGCCGGGCTTGTTCTCTGGAATCATTGAAA  328

seq1  TAAATGTAAATTACTGGGTCAAGGAAAAATTAAGGTTTGGGAAAGAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTAAATTACTGGGTCAAGGAAAAATTAAGGTTTGGGAAAGAAATC  378

seq1  ACGGTTTTAGTAGTAATCCTTCCTGGAAGAAAAAAAAGTAATGGGAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTTTAGTAGTAATCCTTCCTGGAAGAAAAAAAAGTAATGGGAATTA  428

seq1  ATTATGGCTAATGAAGGATTCTGAACTTGGCTGATGTTATGAATGTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGGCTAATGAAGGATTCTGAACTTGGCTGATGTTATGAATGTCAGA  478

seq1  AGACTTAACTAACAATGCAAAATTTTTAAGAAGTTAGAATAAGAAGGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAACTAACAATGCAAAATTTTTAAGAAGTTAGAATAAGAAGGCAG  528

seq1  CATGTTGTGGACATTTTTATTCTATATTTTTCTTTCCTTTTTCTCTTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGTGGACATTTTTATTCTATATTTTTCTTTCCTTTTTCTCTTTAC  578

seq1  TCCATGTAAAGTGAAGTATTAAATAATACCGTGGTAAATTGCTAGATCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTAAAGTGAAGTATTAAATAATACCGTGGTAAATTGCTAGATCTC  628

seq1  AACACATATACAAAATAATAAGGTAATACATACCAAATGATATCTGATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATATACAAAATAATAAGGTAATACATACCAAATGATATCTGATGG  678

seq1  CTGCATTATGCTTTTCATATTTAATTTATGTATTCTCCCCAAAACTTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTATGCTTTTCATATTTAATTTATGTATTCTCCCCAAAACTTACT  728

seq1  CCTTCTCAGGCTTTACCACTTATAATTTACTATTTTTCTAATGAACTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCAGGCTTTACCACTTATAATTTACTATTTTTCTAATGAACTGAA  778

seq1  TCTCTTCCATTATACAGCTTTCAGAAATGGTTGGTAACTATTCCATTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCATTATACAGCTTTCAGAAATGGTTGGTAACTATTCCATTATT  828

seq1  TTCTGCAGGAGTGATTTTTGAGAAAACAGTCGAGCTTTCTAAACATGCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAGGAGTGATTTTTGAGAAAACAGTCGAGCTTTCTAAACATGCTC  878

seq1  CTAATAAAAGCCTCACACCTTCAGAAACGCCTCCTGAGATGCTGTTTGCG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAAAGCCTCACACCTTCAGAAACGCCTCCTGAGATGCTGTTTGCG  928

seq1  TTCACACCGAGGACGATTTAATGATCTGTCCCTGGAGAGATTTTTGTTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACCGAGGACGATTTAATGATCTGTCCCTGGAGAGATTTTTGTTGG  978

seq1  TTCACAGGAATGAAGGAAGTCTACAACCATCCCTTTATTAAATGTTTGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGGAATGAAGGAAGTCTACAACCATCCCTTTATTAAATGTTTGTG  1028

seq1  TCATGCTCTGTTACTGTTTTTTTTTTTTTTTTTTTTTTTAAGGAAAGGCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTCTGTTACTGTTTTTTTTTTTTTTTTTTTTTTTAAGGAAAGGCA  1078

seq1  ATTTTCCAGAATTC  1114
      ||||||||||||||
seq2  ATTTTCCAGAATTC  1092