BAC Information

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BAC

Clone NameB6Ng01-341A20
Chromosome12 (Build37)2 (Build37)
Map Location 61,467,624 - 61,468,06656,494,757 - 56,494,903
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC665644, EG622488
Downstream geneLOC665665, Ppia-ps12_475.1, LOC100040300, LOC665677
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341A20.bB6Ng01-341A20.g
ACCGA124556GA124557
length598147
definitionB6Ng01-341A20.b B6Ng01-341A20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,467,624 - 61,468,066)(56,494,757 - 56,494,903)
sequence
tctcagtttgtgtgtgtgtgttttaatttttattttcaagtattaaacag
ttttattcatttccttcagttctttaattatagtttcctttatttcctta
agtgatgtatttatttccactttaaaggcctctatcatctttataatatt
ggatctaaggtcttcttgtgctttggctgagttatgatatccagggcttg
ctgtagtaggacagctggaaagtaagaaatcaaagtattgttagtcatag
atggtataatagtgtacatatgtgacccaaaaaaattctaccagagaaca
ctttcaacaaagtggagcaatggaaatactcttctccgatagacttccca
taacctcctacatcccacgtctccaactagttctagagagtctccctaaa
tttctgttcttactctcagcttcctccctttcccaccttccatcatcctt
cattgctggtgggagagcaaacttgttcaaccactttggtcagccctgat
gatatatatatatatacagagaacaaaaatgaactcagaaggctgcatct
atatatttgttgtgtgtgtgtgtgtatatgtgtttgtgtatgtgtgtg

taaagcaatccatcatgtccaacccagtacataagttgatgcctgtcact
agtaacagagacaaaaaaagaaaagaaaaaaagagagagaaagaaagaga
gagaaagagagaaaagggaaggggaggagaatggatggaaggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_61467624_61468066
seq2: B6Ng01-341A20.b_548_644 (reverse)

seq1  CACACACATACACATAAACAGACACACATACACAAATACAGATACACACA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TGCACATGCTCACACTTACACACACATACACACAAATACACACACATACA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CACACATATGCACATGCACACACACACATAAATACACAGATACATATAGA  150
                                                        
seq2  --------------------------------------------------  0

seq1  CACACACATACACACACATATACACATACACACACATACATACCCATACA  200
                                                        
seq2  --------------------------------------------------  0

seq1  CACACACACACACACACACACACACACACACACACACACACACTCAGACC  250
          |||||||| ||||| ||||| | |||||||||||||||  || |  
seq2  ----CACACACATACACAAACACATATACACACACACACACA-ACAAATA  45

seq1  TATAGGCAACTAAGGAATCCTGACAGTGGGCTTCCCCAGGGAAGAACATT  300
      |||||           ||       |  | ||||        ||  ||||
seq2  TATAG-----------AT-------GCAGCCTTC------TGAGTTCATT  71

seq1  ACAATTGTTTGTATAGTAACAACTGATCAACCCTGAAAAACATATCTTTA  350
          || | |||||| ||   |   ||                       
seq2  TTTGTTCTCTGTATA-TATATATATAT-----------------------  97

seq1  AGTAACATTACACTGATTTAGTAGTTGTATTTAGAAAATAGGAAAAAATA  400
                                                        
seq2  --------------------------------------------------  97

seq1  CACACACACACACACACATATATATATGTATATATATATATAT  443
                                                 
seq2  -------------------------------------------  97


seq1: chr2_56494757_56494903
seq2: B6Ng01-341A20.g_70_216

seq1  TAAAGCAATCCATCATGTCCAACCCAGTACATAAGTTGATGCCTGTCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAATCCATCATGTCCAACCCAGTACATAAGTTGATGCCTGTCACT  50

seq1  AGTAACAGAGACAAAAAAAGAAAAGAAAAAAAGAGAGAGAAAGAAAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAGAGACAAAAAAAGAAAAGAAAAAAAGAGAGAGAAAGAAAGAGA  100

seq1  GAGAAAGAGAGAAAAGGGAAGGGGAGGAGAATGGATGGAAGGGGAGG  147
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAGAGAAAAGGGAAGGGGAGGAGAATGGATGGAAGGGGAGG  147


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