BAC Information

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BAC

Clone NameB6Ng01-342B17
Chromosome2 (Build37)
Map Location 78,817,748 - 78,818,861
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667920, OTTMUSG00000016703, LOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3
Downstream geneLOC100040526, Itga4, Cerkl, Neurod1, Ssfa2, Ppp1r1c, Pde1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342B17.bB6Ng01-342B17.g
ACCGA125292GA125293
length9981,110
definitionB6Ng01-342B17.b B6Ng01-342B17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcagccttaaaaataaaatatctaccatacactttaatgctcaa
gggccattgagaaaggggatccagaaagaataggagaatgaaagcccgag
gctgaatccaagggcagctgcatataagaactcaaaaacagttttttcca
attttcctttgattcaacttaatttgagctcatttttaaaaaattgtata
ctttgagtgtatgtatgtatacatgtgcacacacatgcatgctatacaca
catttgtcacagtacctggatagaaatccgaggacaacttgcaggagttg
gttccctgcttctaccatgtgggtttcaagtgttaaactcaggcatggtg
gtaagcattcagctattttacctggaggagcaaatgtgacctttttgggg
gtgggatggtaaataagaggggttgctagtcagggatgtggaagaaagaa
aaatacaaacatcagaagaaggaaggcaaaacaacagtgagggtatctgt
acatcataaggaattatactattagcatctctctaacaaaaccaactatg
atacaaacaaggctttgtataaatatgcatatatagtctttaaaaaactt
tattatctgggctgacaatcctctttctaagagccaaagaccatctaaca
accattccctccccaccctgccgagccaacaaccaggcatgagaaagcct
cttttgagttttgggcagagtttgtccaaagagacttctaaaacattaca
ggctattatttctttcttgtctccagaggtgaaaagtaagtccctattgc
tgaagacaccatgcactcccaatgcaggacccagaggcctttgggctgga
actgaccagaaagccacctccctggggacaagctttcatgggaatcatga
aggctacaatccgaacgccagaaggagaaaggcactcgacccttcttact
aacttccaataccaagatcatttttatactttgtggcacatctcttcg
gaattcctgatttttttttaagactgttactttgtgaaggctaaatggtt
atataatgcacggccatagaggatgcatgctttattagttataaagtgat
ctagattaagaacctaacgagtgactaatcctggtgctctgaagagagag
agaagacatatccttccataacaagcatttacaaggacaaagcatttcta
acccctcttgattccccagccactaaagtgggtaggtggaggagcgcctc
atagaagcagagtaaggggggatgggataggaggtttgcagagggaaaac
tgggaaaggggaataacatttgaaatttaaataaacaaagtatccagtta
aaatttttcaaacaaaacaaaacaaaacaaaaacaaaaaacaaacaaaaa
aaactaagtgtagttaaaacttggatcttaaccaggaagtctatacttta
aaggtcagcattgtaaattggtttcctctgcaacagcaaagtgtcacaaa
catgaggcacaaggcaagacttcagcatagttctgtgattttggtcacac
agcttactttaatttactttaagctgtacaggaagctaacatgagatgaa
tgctgagttcctggcttcagaccaagcaagttcatacttggtaagattcc
actctcaaatgtcatttcccccagcttttctacactggcccatgactgcc
aaccacaagttgatgcacatttcaatgaaaagtacccctcaaataaactt
gttacaaactcgaaccgatcatcatatcataactttatttggaggactta
tattctgccagtgtatttctttcttgttgaacaaacataccttcttagca
taagaagcataagagatgaaccctagtcatgcaggtccaatagaaactag
ccaataaatggagcttggtaggtagtgtggtttgttcccaggggttgtct
tcatttcatataaaatactagttatatgaaatatagtttggggagctaaa
tcacaggtggtgataccagtactagagagggctgagtagacttagttgaa
aatagaataggcaattcgcattgccccttagattgtacataggtcagcaa
cagatggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_78817748_78818861
seq2: B6Ng01-342B17.g_65_1174

seq1  GAATTCCTGATTTTTTTTTAAGACTGTTACTTTGTGAAGGCTAAATGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATTTTTTTTTAAGACTGTTACTTTGTGAAGGCTAAATGGTT  50

seq1  ATATAATGCACGGCCATAGAGGATGCATGCTTTATTAGTTATAAAGTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATGCACGGCCATAGAGGATGCATGCTTTATTAGTTATAAAGTGAT  100

seq1  CTAGATTAAGAACCTAACGAGTGACTAATCCTGGTGCTCTGAAGAGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTAAGAACCTAACGAGTGACTAATCCTGGTGCTCTGAAGAGAGAG  150

seq1  AGAAGACATATCCTTCCATAACAAGCATTTACAAGGACAAAGCATTTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACATATCCTTCCATAACAAGCATTTACAAGGACAAAGCATTTCTA  200

seq1  ACCCCTCTTGATTCCCCAGCCACTAAAGTGGGTAGGTGGAGGAGCGCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTCTTGATTCCCCAGCCACTAAAGTGGGTAGGTGGAGGAGCGCCTC  250

seq1  ATAGAAGCAGAGTAAGGGGGGATGGGATAGGAGGTTTGCAGAGGGAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGCAGAGTAAGGGGGGATGGGATAGGAGGTTTGCAGAGGGAAAAC  300

seq1  TGGGAAAGGGGAATAACATTTGAAATTTAAATAAACAAAGTATCCAGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGGGGAATAACATTTGAAATTTAAATAAACAAAGTATCCAGTTA  350

seq1  AAATTTTTCAAACAAAACAAAACAAAACAAAAACAAAAAACAAACAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTCAAACAAAACAAAACAAAACAAAAACAAAAAACAAACAAAAA  400

seq1  AAACTAAGTGTAGTTAAAACTTGGATCTTAACCAGGAAGTCTATACTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAGTGTAGTTAAAACTTGGATCTTAACCAGGAAGTCTATACTTTA  450

seq1  AAGGTCAGCATTGTAAATTGGTTTCCTCTGCAACAGCAAAGTGTCACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAGCATTGTAAATTGGTTTCCTCTGCAACAGCAAAGTGTCACAAA  500

seq1  CATGAGGCACAAGGCAAGACTTCAGCATAGTTCTGTGATTTTGGTCACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGCACAAGGCAAGACTTCAGCATAGTTCTGTGATTTTGGTCACAC  550

seq1  AGCTTACTTTAATTTACTTTAAGCTGTACAGGAAGCTAACATGAGATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTACTTTAATTTACTTTAAGCTGTACAGGAAGCTAACATGAGATGAA  600

seq1  TGCTGAGTTCCTGGCTTCAGACCAAGCAAGTTCATACTTGGTAAGATTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGTTCCTGGCTTCAGACCAAGCAAGTTCATACTTGGTAAGATTCC  650

seq1  ACTCTCAAATGTCATTTCCCCCAGCTTTTCTACACTGGCCCATGACTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAAATGTCATTTCCCCCAGCTTTTCTACACTGGCCCATGACTGCC  700

seq1  AACCACAAGTTGATGCACATTTCAATGAAAAGTACCCCTCAAATAAACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAAGTTGATGCACATTTCAATGAAAAGTACCCCTCAAATAAACTT  750

seq1  GTTACAAACTCGAACCGATCATCATATCATAACTTTATTTGGAGGACTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAAACTCGAACCGATCATCATATCATAACTTTATTTGGAGGACTTA  800

seq1  TATTCTGCCAGTGTATTTCTTTCTTGTTGAACAAACATACCTTCTTAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGCCAGTGTATTTCTTTCTTGTTGAACAAACATACCTTCTTAGCA  850

seq1  TAAGAAGCATAAGAGATGAACCCTAGTCATGCAGGTCCAATAGAAACTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGCATAAGAGATGAACCCTAGTCATGCAGGTCCAATAGAAACTAG  900

seq1  CCAATAAATGGAGCTTGGTAGGTAGTGTGGTTTGTTCCCAGGGG-TGTCT  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCAATAAATGGAGCTTGGTAGGTAGTGTGGTTTGTTCCCAGGGGTTGTCT  950

seq1  TCATTTCATAT-AAATACTAGTTTATATGAAATATAGTTT-GGGAGCTAA  997
      ||||||||||| ||||||||| |||||||||||||||||| ||||||| |
seq2  TCATTTCATATAAAATACTAG-TTATATGAAATATAGTTTGGGGAGCT-A  998

seq1  AACCACAGGTGGTGATACCAGTACTAGGAAGAGGGTTGAGAAGGAACTAG  1047
      || ||||||||||||||||||||||||  |||||| |||| ||  |||  
seq2  AATCACAGGTGGTGATACCAGTACTAG--AGAGGGCTGAGTAG--ACTTA  1044

seq1  GTGGAAAATAGAAATAGGCAAATTCGCAATTGCCC--TAGAATGTACATA  1095
      || |||||||| ||||||| ||||||| |||||||  |||| ||||||||
seq2  GTTGAAAATAG-AATAGGC-AATTCGC-ATTGCCCCTTAGATTGTACATA  1091

seq1  -GTCAGCAAACAGAAGGAGA  1114
       |||||| |||||| |||||
seq2  GGTCAGC-AACAGATGGAGA  1110