BAC Information

Click to search

BAC

Clone NameB6Ng01-342E07
Chromosome2 (Build37)
Map Location 38,068,009 - 38,069,252
singlet/doubletsinglet
Overlap geneDennd1a
Upstream geneOlfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491
Downstream geneLOC100040947, Lhx2, Nek6, Psmb7, LOC674251, Nr5a1, Nr6a1, Olfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342E07.bB6Ng01-342E07.g
ACCGA125405GA125406
length1,2811,214
definitionB6Ng01-342E07.b B6Ng01-342E07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggccaatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaacagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagccacaaataatataaaatatctcggcg
tgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtcc
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccattaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc
gaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatca
ccatgcctgacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtggaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctgg
cacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatc
tccttgtactaaggtcaaatctagtggatcaagaacttcacataaaacca
gagacactgaacttatagaggagaaagtggggaaagcctgagatatgggc
acagggaaaattctgacagaacagcaattgcttgtgctgtaggatcgaga
tgacaattggacctaatgaacctcaagttctgccagttcaaagaaactgt
tcttataagacaaagacccacagacttggtaggaccttaccatcctaatc
gatagcggacatatatatcccacatttttta
gaattctcattcagtggggtctgttggtcttcataagtaatgtagtgtta
ctatgtatggtctcatttacagagaactgcaggttataactgccatttta
aagggaatttcaccggtcagtcactctatggctgcaagcactttctgagt
gactctagggatttacttttgtttttttttttgttttttttttttatagt
atggtaaaaaagaaatttagattgtattatgtattcattcatgtactact
cagggttctctagaagaacaggaatgatagaatgaatattttttgaaaag
ggatttattagattggcttacatgttatggtttggattgtccagcaatgg
tcactttcagtcaggagagactgagaacctagcagctgctcagtctgaga
ctcagtgcttcagcagccccactctggcactgtgggcttggaggattcct
ggagatcgattggtggcagaagaagctgagttctgctatcagtggagctg
tcagcagaagtggcagaggtggaagcagattagatgaacttgcaaacaag
acatgaagataagcaggcaaaaagcaaaagctttttccctaaaccttgta
tctgggttgatgctggaaggtgacacccacatttaagatgaagcttccca
tttcaattaacctaattaagaacatacctcacagatgtgcccagagactt
gtctcttatttgattccagatctagtcaagttgacaaccaagattaacca
tgacagttcattaccttctatttcccatctgctatgtttattaccactgg
gcggttgcaattcccaggaccatccaagtacctatgttaaaaacaccaag
agaccaaaaggagagagaaagtgatcaggcagctagtagttgcttccatt
gattaaatcagtggcttgcttggatgaactttttgtttgaatctgaacat
ttgtttgtgtttggattctgaacatttgaatttatttataattttaggat
ctcaggtaaatattaagccttctgatctataatgtacagtagctctctgc
agaagagcatatatcaggtcaagagagaagatttgttgagagctgaggtg
aaactactgttactgatagaagacactgtatgttgatctcgactgaaagg
atcaggctaagtctgaacctaaaacttgaaaatgagtggtgccgaattgt
tttctcctaacatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_38068009_38069252
seq2: B6Ng01-342E07.g_67_1280 (reverse)

seq1  AATGTTAGGAGAAACAAATACTCTGCAACAACTCAATTTTTCAGTTTTTA  50
      ||||||||||||||  |||  || || || |||||  ||||||  |||||
seq2  AATGTTAGGAGAAAACAAT--TCGGC-ACCACTCA--TTTTCAAGTTTTA  45

seq1  TGATGTCAGGACTTTAGCCTGATCATTCTCAGCTGAGGAATCAACATTTC  100
       |   ||| ||| ||||||||||| || ||||  |||  |||||||  | 
seq2  GG--TTCA-GAC-TTAGCCTGATCCTT-TCAGTCGAG--ATCAACA--TA  86

seq1  CAGTTGCTCTTAACAGGTGACAGGTTAAGTTTCACCTCAGCTCTCAACCA  150
      ||||  ||  || || || ||||    |||||||||||||||||||| ||
seq2  CAGTGTCTTCTATCA-GTAACAG---TAGTTTCACCTCAGCTCTCAA-CA  131

seq1  AATCTTCTACTC-TGAACTGATTAATTATGCTCTTCTGCAGAGAGCTACT  199
      |||||||| ||| ||| |||||    ||||||||||||||||||||||||
seq2  AATCTTCT-CTCTTGACCTGAT---ATATGCTCTTCTGCAGAGAGCTACT  177

seq1  GTACATTATTAGATCAG-AGGCTTAATATTTTACCTGAGATCTTAAAATA  248
      |||||||| |||||||| |||||||||| ||||||||||||| |||||| 
seq2  GTACATTA-TAGATCAGAAGGCTTAATA-TTTACCTGAGATCCTAAAAT-  224

seq1  TAAAATAAAATTCAAAATGTTCAGAATCCAAACAACAAACAAATGTTCAG  298
      || ||  |||||| ||||||||||||||||||| ||||||||||||||||
seq2  TATAAATAAATTC-AAATGTTCAGAATCCAAAC-ACAAACAAATGTTCAG  272

seq1  AATTCAAAACAAAAAAGTTCATCCAAGCAAGCCACTGATTTAATCAATGG  348
       |||||||   |||||||||||||||||||||||||||||||||||||||
seq2  -ATTCAAA--CAAAAAGTTCATCCAAGCAAGCCACTGATTTAATCAATGG  319

seq1  AAGCAACTACTAGCTGCCTGATCACTTTCTCTCTCCTTTTTGGTCTCTTG  398
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAGCAACTACTAGCTGCCTGATCACTTTCTCTCTCC-TTTTGGTCTCTTG  368

seq1  GTGTTTTTAACATAGGTACTTGGATGGTCCTGGGAATTGCAACCGCCCAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTAACATAGGTACTTGGATGGTCCTGGGAATTGCAACCGCCCAG  418

seq1  TGGTAATAAACATAGCAGATGGGAAATAGAAGGTAATGAACTGTCATGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATAAACATAGCAGATGGGAAATAGAAGGTAATGAACTGTCATGGT  468

seq1  TAATCTTGGTTGTCAACTTGACTAGATCTGGAATCAAATAAGAGACAAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTGGTTGTCAACTTGACTAGATCTGGAATCAAATAAGAGACAAGT  518

seq1  CTCTGGGCACATCTGTGAGGTATGTTCTTAATTAGGTTAATTGAAATGGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGCACATCTGTGAGGTATGTTCTTAATTAGGTTAATTGAAATGGG  568

seq1  AAGCTTCATCTTAAATGTGGGTGTCACCTTCCAGCATCAACCCAGATACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCATCTTAAATGTGGGTGTCACCTTCCAGCATCAACCCAGATACA  618

seq1  AGGTTTAGGGAAAAAGCTTTTGCTTTTTGCCTGCTTATCTTCATGTCTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTAGGGAAAAAGCTTTTGCTTTTTGCCTGCTTATCTTCATGTCTTG  668

seq1  TTTGCAAGTTCATCTAATCTGCTTCCACCTCTGCCACTTCTGCTGACAGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAGTTCATCTAATCTGCTTCCACCTCTGCCACTTCTGCTGACAGC  718

seq1  TCCACTGATAGCAGAACTCAGCTTCTTCTGCCACCAATCGATCTCCAGGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGATAGCAGAACTCAGCTTCTTCTGCCACCAATCGATCTCCAGGA  768

seq1  ATCCTCCAAGCCCACAGTGCCAGAGTGGGGCTGCTGAAGCACTGAGTCTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCAAGCCCACAGTGCCAGAGTGGGGCTGCTGAAGCACTGAGTCTC  818

seq1  AGACTGAGCAGCTGCTAGGTTCTCAGTCTCTCCTGACTGAAAGTGACCAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAGCAGCTGCTAGGTTCTCAGTCTCTCCTGACTGAAAGTGACCAT  868

seq1  TGCTGGACAATCCAAACCATAACATGTAAGCCAATCTAATAAATCCCTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGACAATCCAAACCATAACATGTAAGCCAATCTAATAAATCCCTTT  918

seq1  TCAAAAAATATTCATTCTATCATTCCTGTTCTTCTAGAGAACCCTGAGTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAATATTCATTCTATCATTCCTGTTCTTCTAGAGAACCCTGAGTA  968

seq1  GTACATGAATGAATACATAATACAATCTAAATTTCTTTTTTACCATACTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGAATGAATACATAATACAATCTAAATTTCTTTTTTACCATACTA  1018

seq1  TAAAAAAAAAAAACAAAAAAAAAAACAAAAGTAAATCCCTAGAGTCACTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAAACAAAAAAAAAAACAAAAGTAAATCCCTAGAGTCACTC  1068

seq1  AGAAAGTGCTTGCAGCCATAGAGTGACTGACCGGTGAAATTCCCTTTAAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTGCTTGCAGCCATAGAGTGACTGACCGGTGAAATTCCCTTTAAA  1118

seq1  ATGGCAGTTATAACCTGCAGTTCTCTGTAAATGAGACCATACATAGTAAC  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGTTATAACCTGCAGTTCTCTGTAAATGAGACCATACATAGTAAC  1168

seq1  ACTACATTACTTATGAAGACCAACAGACCCCACTGAATGAGAATTC  1244
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATTACTTATGAAGACCAACAGACCCCACTGAATGAGAATTC  1214