BAC Information

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BAC

Clone NameB6Ng01-342E12
Chromosome2 (Build37)
Map Location 154,095,409 - 154,096,564
singlet/doubletsinglet
Overlap gene5430413K10Rik
Upstream genePofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465
Downstream geneOTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342E12.bB6Ng01-342E12.g
ACCGA125413GA125414
length1,2291,166
definitionB6Ng01-342E12.b B6Ng01-342E12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaggaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaatttcaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaattaactcaaacaag
tcaatggtctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatacaaaatatcttggcg
tgaccctaactaaggaagtgaaagatctgtatgataagaacttcaaatct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aaagaattagaaagagcaatctgcaaattcatctagaataacaaaaaacc
taggatagcaaaaactcttctcaaggataaaagaacatctggtggaatca
ccatgcctgacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacatacaagtagacaaatggaatagaattgatga
cccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctgg
cacaactcttgttatcgtgtagaagaatgcgaatcgatccatacttatct
cttgtactaggtcaaatctagtggatcaggaacttcacataaaacagaga
cactgaacctatagaaggagaagtggggaaagcttgaagatatgggcaca
gggaaatctgaccgaacagcaatgcctgtactgtaggatcgaatgacatg
gaacctatgaaactcaagttctgcaggcagacccttcttagaccaaggac
cccaacgaattggggaaaggaatctctta
gaattctctggcaagaggggatccatgcagtcgaggtcgggatcacacag
agacagcaggcttactacactgactcttgtgttcacaagatctggaatga
agcacctgctggcactggcaccatgctggctgtttaggaactgtactgtt
tactgctatgacataacctactgtgggctgtgtgtctgctcactgagcta
tagctcagatgtcattcatctggtctgttccctgatcaaggctggcttgt
ggtaatggctgctgataggttccatataaaagaatgggagtatgaagagc
ccttgtggacaactgctgacattccctcagtcaggcactgtaggaattga
tttaggctcagctgtagggaagtatggggtccaggacagcttaaggtttg
ccactatttctgagtcacgtttcatactgcttgttcgggtgcaagaatat
gtgcaaggtcctggatttgaggcaaagcaaagcaaagcaaaagaaacaaa
caaagaaaagaactgtatttctgttacttactgatttcatcaatttgaca
tcggagttctttaaagtatgtgaagacacacctacaggaatgttcatttt
tttatacgtttctgaaaaaagaaatatcacctcgtgacgggagttaaggg
aaatgacaacctgactgatttgtttgaccacagtcacatgtgggatctct
gaccagtggccctaggaggggtcactgtcacactcattctacgtggtggc
atgaatactgtccatctcaggctatagaatggtgtgttggaagagaggcc
cccaaagcaggtggggacctggtggtctcctaacactgatgactagcgat
ggattgcctcagcacaggacatgaccgcatggcacactcatttggagggt
cagtgcactatgtggaactaacagtagatttaaccagggatggtgtatta
cctggcattggcaccatcatcattgttgtgcaatgaggtgtgaacattaa
gccttcaagtgttaataacccttatgtctagaggtgtggagtggaccaag
ttccactttggccgctgtatattgctgatgtcgcggtaccaagaaatcag
tggaacaaggctttctggaggcaacttgatgcgtttcgctattaacaagg
gctgtctgtcaatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_154095409_154096564
seq2: B6Ng01-342E12.g_68_1233 (reverse)

seq1  AAAAATGACAGCAAGCCCTGGTTAATAGCGAAAACGCATCAAGTTGCCTC  50
      |||| ||||||  |||||| |||||||||| |||||||||||||||||| 
seq2  AAAATTGACAGACAGCCCTTGTTAATAGCG-AAACGCATCAAGTTGCCT-  48

seq1  CCAAGAAGCCTTG-TCCACTGGTGTCTTGGTACCGCGACCATCAGC-ATA  98
      |||  |||||||| ||||||| | |||||||||||||| ||||||| |||
seq2  CCAGAAAGCCTTGTTCCACTGATTTCTTGGTACCGCGA-CATCAGCAATA  97

seq1  TACAGCGG-CAAAGTGGACCTGGGT-CACT-CACACCTCTAGACATTAGG  145
      |||||||| ||||||||| || ||| |||| ||||||||||||||| |||
seq2  TACAGCGGCCAAAGTGGAACTTGGTCCACTCCACACCTCTAGACATAAGG  147

seq1  GTTA-TAACACTTGAAGGCT--ATG-TCACACCTCATTGCACAACAATGA  191
      |||| |||||||||||||||  ||| ||||||||||||||||||||||||
seq2  GTTATTAACACTTGAAGGCTTAATGTTCACACCTCATTGCACAACAATGA  197

seq1  TGATGGTGCCAATGCCAGGT-ATACA-CATCCCTGGTTAATTCTACTG-T  238
      |||||||||||||||||||| ||||| ||||||||||||| ||||||| |
seq2  TGATGGTGCCAATGCCAGGTAATACACCATCCCTGGTTAAATCTACTGTT  247

seq1  AGTTCCACATAGTGCACTGACCCT-CAAATGAGTGTGCCATGCGGTCATG  287
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGTTCCACATAGTGCACTGACCCTCCAAATGAGTGTGCCATGCGGTCATG  297

seq1  TCCTGTGCTGAGGCAATCCATCGCTAGTCATCAGTGTTAGGAGACCACCA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGCTGAGGCAATCCATCGCTAGTCATCAGTGTTAGGAGACCACCA  347

seq1  GGTCCCCACCTGCTTTGGGGGCCTCTCTTCCAACACACCATTCTATAGCC  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCCACCTGCTTTGGGGGCCTCTCTTCCAACACACCATTCTATAGCC  397

seq1  TGAGATGGACAGTATTCATGCCACCACGTAGAATGAGTGTGACAGTGACC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGGACAGTATTCATGCCACCACGTAGAATGAGTGTGACAGTGACC  447

seq1  CCTCCTAGGGCCACTGGTCAGAGATCCCACATGTGACTGTGGTCAAACAA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTAGGGCCACTGGTCAGAGATCCCACATGTGACTGTGGTCAAACAA  497

seq1  ATCAGTCAGGTTGTCATTTCCCTTAACTCCCGTCACGAGGTGATATTTCT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCAGGTTGTCATTTCCCTTAACTCCCGTCACGAGGTGATATTTCT  547

seq1  TTTTTCAGAAACGTATAAAAAAATGAACATTCCTGTAGGTGTGTCTTCAC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGAAACGTATAAAAAAATGAACATTCCTGTAGGTGTGTCTTCAC  597

seq1  ATACTTTAAAGAACTCCGATGTCAAATTGATGAAATCAGTAAGTAACAGA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTAAAGAACTCCGATGTCAAATTGATGAAATCAGTAAGTAACAGA  647

seq1  AATACAGTTCTTTTCTTTGTTTGTTTCTTTTGCTTTGCTTTGCTTTGCCT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGTTCTTTTCTTTGTTTGTTTCTTTTGCTTTGCTTTGCTTTGCCT  697

seq1  CAAATCCAGGACCTTGCACATATTCTTGCACCCGAACAAGCAGTATGAAA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCAGGACCTTGCACATATTCTTGCACCCGAACAAGCAGTATGAAA  747

seq1  CGTGACTCAGAAATAGTGGCAAACCTTAAGCTGTCCTGGACCCCATACTT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGACTCAGAAATAGTGGCAAACCTTAAGCTGTCCTGGACCCCATACTT  797

seq1  CCCTACAGCTGAGCCTAAATCAATTCCTACAGTGCCTGACTGAGGGAATG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACAGCTGAGCCTAAATCAATTCCTACAGTGCCTGACTGAGGGAATG  847

seq1  TCAGCAGTTGTCCACAAGGGCTCTTCATACTCCCATTCTTTTATATGGAA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGTTGTCCACAAGGGCTCTTCATACTCCCATTCTTTTATATGGAA  897

seq1  CCTATCAGCAGCCATTACCACAAGCCAGCCTTGATCAGGGAACAGACCAG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCAGCAGCCATTACCACAAGCCAGCCTTGATCAGGGAACAGACCAG  947

seq1  ATGAATGACATCTGAGCTATAGCTCAGTGAGCAGACACACAGCCCACAGT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGACATCTGAGCTATAGCTCAGTGAGCAGACACACAGCCCACAGT  997

seq1  AGGTTATGTCATAGCAGTAAACAGTACAGTTCCTAAACAGCCAGCATGGT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATGTCATAGCAGTAAACAGTACAGTTCCTAAACAGCCAGCATGGT  1047

seq1  GCCAGTGCCAGCAGGTGCTTCATTCCAGATCTTGTGAACACAAGAGTCAG  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGCCAGCAGGTGCTTCATTCCAGATCTTGTGAACACAAGAGTCAG  1097

seq1  TGTAGTAAGCCTGCTGTCTCTGTGTGATCCCGACCTCGACTGCATGGATC  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTAAGCCTGCTGTCTCTGTGTGATCCCGACCTCGACTGCATGGATC  1147

seq1  CCCTCTTGCCAGAGAATTC  1156
      |||||||||||||||||||
seq2  CCCTCTTGCCAGAGAATTC  1166