BAC Information

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BAC

Clone NameB6Ng01-342F10
Chromosome2 (Build37)
Map Location 131,073,851 - 131,205,530
singlet/doubletdoublet
Overlap genePank2, Rnf24
Upstream geneTmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik
Downstream geneLOC100043463, Smox, Adra1d, Lamr1-ps1, Prnp, Prnd, Rassf2, Slc23a2, LOC626513, LOC100043470, EG329521, 5730494N06Rik, Pcna, Cds2, Prokr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342F10.bB6Ng01-342F10.g
ACCGA125454GA125455
length1,0361,179
definitionB6Ng01-342F10.b B6Ng01-342F10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,073,851 - 131,074,884)(131,204,332 - 131,205,530)
sequence
gaattcactcggtagatcaggctgaccacaaattcagagatccacctgtc
tctttcaagtgctaggatcaaaggcgtgtgccaccaccatctgacacatt
atcacttttaaatgaaaaggtgctggggcttttgggtgtacaaacctcag
tgagataggtgctccttgggcagaaagactagttactcctacagcaggga
cacaattaggtttagggtgggtatgatagctcacgcctttaatcccagaa
ctcaggaggcagaggcaggcggatctctaagtgagttcaagaccagcttg
gtctacacagcaaattccaggccagccagtctccagaaaatgaaatacaa
tgatgtctattgaggctatcctcatgagttctctcaaggtgccctttgct
ggacaagggataattgtggagccaattccatctctgggctttattgtgaa
cacaaaccttagagaaatcagggatgggggttgcaattacaatcttccct
acatgccctaatgaccccaagttgtctgcacaacttttatcaccttcgtt
tctaacgaaccctggtctttgtgccctttctcagagccatactggccatg
ctagtgaacagttgtgcataggtactagttttagtgtgttgccattctag
tatagctttgaaagactagtctcaataatacaacatgtagccctacagag
gttacccacatggcgagatttaaagactggccactaagcatctcttaggt
caagaatgtgtaggaagtctcagaggccttccctgttctttgcacatttt
gatgaccaggccagcattcaatggcacctttatctcagctggccgcttag
atgccaccttcagaaagaggaaggctttggcattgtcaggttccaggagt
tcaatgtttatgtgtttgccttcagctgcagtaggatccatagcttgtgt
tgaagggagagtttggaagagtctggacagttgaaccagaacccagggaa
tggaaggagcattctgtaccacacccccggtactct
gaattcctttcttgcttgactttgggaacacattcttggcatctttgcga
cccttctctgtggggtctgggaatgtagctcagttgacagagtgtttgtt
tagcattcacaaagccctgggttcaatttccagagccacataatctgtgg
gtgacaacatatccctgatatcaagaaatggggtgttgaagatgggagga
tcagaaattcaaggtcatgcttcaaggccaacctagaatacataaaacct
gatctaaaaacaaaagcctcatggactatgcctgtgccttcttctgtcca
tttagggtcacttcttcagaggtagggctactccatcaggacctatgttc
ttcccaggctccatcttcatatggttcgaatgagaatggctcctataggc
tcgaacttttgaatacttagcccctagtagatgcaactgtttgagaagaa
tcaggaggtgtggctttggaggaggtgtgtcaccggggctaggacttgag
gtttcaaaagcccatgcctttcccaagttagctctctctcgtctctgcct
tgtgcttgtggatcagacacaagctctcattcacttctctaggaccaggc
ctgcctacctgctgccctgcttcctgccatggtcatgactcaccctctga
actgaaaacaacctcccaatagactttcttttctgagttgcctttgacat
ggtgtctctttgcagcaacagaaagtaagacatctcacttcttgcgcctc
cttccttccagacatatggtctcctcatccacctgcctacacaccgaata
accagtgaattatgtatttttcttcttctatggatttctctgttttgtat
actacctctgctatgccattattctccttttctctgagagaatagaataa
tgacccctcaagacgtcctcgtccaaatccctggaacctgtagatacctt
tcatggcatctttggcgaggcttgggtacacgatgaagttaaggatctgg
agaaggagtttatctttgcatttcaggggttaccccatggtgtatggggg
tttctgtagtgggatgcaataaaagatatcaataatatggaatgcctagc
ttgttactagcctcagccatgattacttgcctggttttctaaggggtgta
ctgactagtttgctcactggacagttgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_131073851_131074884
seq2: B6Ng01-342F10.b_50_1085

seq1  GAATTCACTCGGTAGATCAGGCTGACCACAAATTCAGAGATCCACCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCGGTAGATCAGGCTGACCACAAATTCAGAGATCCACCTGTC  50

seq1  TCTTTCAAGTGCTAGGATCAAAGGCGTGTGCCACCACCATCTGACACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAAGTGCTAGGATCAAAGGCGTGTGCCACCACCATCTGACACATT  100

seq1  ATCACTTTTAAATGAAAAGGTGCTGGGGCTTTTGGGTGTACAAACCTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTTTAAATGAAAAGGTGCTGGGGCTTTTGGGTGTACAAACCTCAG  150

seq1  TGAGATAGGTGCTCCTTGGGCAGAAAGACTAGTTACTCCTACAGCAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATAGGTGCTCCTTGGGCAGAAAGACTAGTTACTCCTACAGCAGGGA  200

seq1  CACAATTAGGTTTAGGGTGGGTATGATAGCTCACGCCTTTAATCCCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTAGGTTTAGGGTGGGTATGATAGCTCACGCCTTTAATCCCAGAA  250

seq1  CTCAGGAGGCAGAGGCAGGCGGATCTCTAAGTGAGTTCAAGACCAGCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAGGCAGAGGCAGGCGGATCTCTAAGTGAGTTCAAGACCAGCTTG  300

seq1  GTCTACACAGCAAATTCCAGGCCAGCCAGTCTCCAGAAAATGAAATACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACACAGCAAATTCCAGGCCAGCCAGTCTCCAGAAAATGAAATACAA  350

seq1  TGATGTCTATTGAGGCTATCCTCATGAGTTCTCTCAAGGTGCCCTTTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCTATTGAGGCTATCCTCATGAGTTCTCTCAAGGTGCCCTTTGCT  400

seq1  GGACAAGGGATAATTGTGGAGCCAATTCCATCTCTGGGCTTTATTGTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGGGATAATTGTGGAGCCAATTCCATCTCTGGGCTTTATTGTGAA  450

seq1  CACAAACCTTAGAGAAATCAGGGATGGGGGTTGCAATTACAATCTTCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACCTTAGAGAAATCAGGGATGGGGGTTGCAATTACAATCTTCCCT  500

seq1  ACATGCCCTAATGACCCCAAGTTGTCTGCACAACTTTTATCACCTTCGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCCTAATGACCCCAAGTTGTCTGCACAACTTTTATCACCTTCGTT  550

seq1  TCTAACGAACCCTGGTCTTTGTGCCCTTTCTCAGAGCCATACTGGCCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACGAACCCTGGTCTTTGTGCCCTTTCTCAGAGCCATACTGGCCATG  600

seq1  CTAGTGAACAGTTGTGCATAGGTACTAGTTTTAGTGTGTTGCCATTCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGAACAGTTGTGCATAGGTACTAGTTTTAGTGTGTTGCCATTCTAG  650

seq1  TATAGCTTTGAAAGACTAGTCTCAATAATACAACATGTAGCCCTACAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTTTGAAAGACTAGTCTCAATAATACAACATGTAGCCCTACAGAG  700

seq1  GTTACCCACATGGCGAGATTTAAAGACTGGCCACTAAGCATCTCTTAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCCACATGGCGAGATTTAAAGACTGGCCACTAAGCATCTCTTAGGT  750

seq1  CAAGAATGTGTAGGAAGTCTCAGAGGCCTTCCCTGTTCTTTGCACATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATGTGTAGGAAGTCTCAGAGGCCTTCCCTGTTCTTTGCACATTTT  800

seq1  GATGACCAGGCCAGCATTCAATGGCACCTTTATCTCAGCTGGCCGCTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACCAGGCCAGCATTCAATGGCACCTTTATCTCAGCTGGCCGCTTAG  850

seq1  ATGCCACCTTCAGAAAGAGGAAGGCTTTGGCATTGTCAGGTTCCAGGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACCTTCAGAAAGAGGAAGGCTTTGGCATTGTCAGGTTCCAGGAGT  900

seq1  CCAATGTTTATGTG-TTGCCTTCAGCTGCAGTAGGATTCATAGC-TGTGT  948
       ||||||||||||| |||||||||||||||||||||| |||||| |||||
seq2  TCAATGTTTATGTGTTTGCCTTCAGCTGCAGTAGGATCCATAGCTTGTGT  950

seq1  TGAAGGGAGAG-TTGGAAGAGGTCTGGACAAGGTGAACCAGAACCCAGGG  997
      ||||||||||| |||||||| |||||||| || |||||||||||||||||
seq2  TGAAGGGAGAGTTTGGAAGA-GTCTGGAC-AGTTGAACCAGAACCCAGGG  998

seq1  AATGGAAGGAGCA-TCTGTACCCACA-CCCGGGTACTCT  1034
      ||||||||||||| |||||| ||||| ||| ||||||||
seq2  AATGGAAGGAGCATTCTGTA-CCACACCCCCGGTACTCT  1036

seq1: chr2_131204332_131205530
seq2: B6Ng01-342F10.g_71_1249 (reverse)

seq1  TCCAACTGTGTCAAGTTGACACAAAACTAGCCAGTACACACCCCCTTCGA  50
      ||||||  |||| |||    |  ||||||| |||||||   ||||||  |
seq2  TCCAAC--TGTCCAGT---GAGCAAACTAGTCAGTACA---CCCCTT--A  40

seq1  AAAAACAAGGCCAAGTAATCAGTGGCTGAAGCTAGTAAACCAAAACTA-G  99
       ||||| ||| |||||||||| ||||||| ||||||||    || ||| |
seq2  GAAAACCAGG-CAAGTAATCA-TGGCTGAGGCTAGTAA---CAAGCTAGG  85

seq1  CATTTTCCAATATATATTGATTATCTTTTA-TGCATCCCACTAACAGAAA  148
      ||||   | |||| |||||| ||||||||| ||||||||||| |||||||
seq2  CATT---CCATAT-TATTGA-TATCTTTTATTGCATCCCACT-ACAGAAA  129

seq1  CCCCATTAACACATGGGGGTAAACCCCTGAAATGC-AAGATAAACTCCTT  197
      ||||  ||   |||||||   |||||||||||||| ||||||||||||||
seq2  CCCCCATACACCATGGGG--TAACCCCTGAAATGCAAAGATAAACTCCTT  177

seq1  CTCCAGATCCTTAACTTCATCGTGTTACCAAGCTTCG-CAAAGATGCCAT  246
      |||||||||||||||||||||||||  |||||| ||| ||||||||||||
seq2  CTCCAGATCCTTAACTTCATCGTGTACCCAAGCCTCGCCAAAGATGCCAT  227

seq1  GAAAGGTATCTACAGGTTCCAGGGATTTGGACGAGGACGTCTTGAGGGGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTATCTACAGGTTCCAGGGATTTGGACGAGGACGTCTTGAGGGGT  277

seq1  CATTATTCTATTTCTCTCAGAGAAAAGGAGAATAATGGCATAGCAGAGGT  346
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CATTATTCTA-TTCTCTCAGAGAAAAGGAGAATAATGGCATAGCAGAGGT  326

seq1  AGTATACAAAACAGAGAAATCCATAGAAGAAGAAAAATACATAATTCACT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACAAAACAGAGAAATCCATAGAAGAAGAAAAATACATAATTCACT  376

seq1  GGTTATTCGGTGTGTAGGCAGGTGGATGAGGAGACCATATGTCTGGAAGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTCGGTGTGTAGGCAGGTGGATGAGGAGACCATATGTCTGGAAGG  426

seq1  AAGGAGGCGCAAGAAGTGAGATGTCTTACTTTCTGTTGCTGCAAAGAGAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGCGCAAGAAGTGAGATGTCTTACTTTCTGTTGCTGCAAAGAGAC  476

seq1  ACCATGTCAAAGGCAACTCAGAAAAGAAAGTCTATTGGGAGGTTGTTTTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTCAAAGGCAACTCAGAAAAGAAAGTCTATTGGGAGGTTGTTTTC  526

seq1  AGTTCAGAGGGTGAGTCATGACCATGGCAGGAAGCAGGGCAGCAGGTAGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGAGGGTGAGTCATGACCATGGCAGGAAGCAGGGCAGCAGGTAGG  576

seq1  CAGGCCTGGTCCTAGAGAAGTGAATGAGAGCTTGTGTCTGATCCACAAGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTGGTCCTAGAGAAGTGAATGAGAGCTTGTGTCTGATCCACAAGC  626

seq1  ACAAGGCAGAGACGAGAGAGAGCTAACTTGGGAAAGGCATGGGCTTTTGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCAGAGACGAGAGAGAGCTAACTTGGGAAAGGCATGGGCTTTTGA  676

seq1  AACCTCAAGTCCTAGCCCCGGTGACACACCTCCTCCAAAGCCACACCTCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCAAGTCCTAGCCCCGGTGACACACCTCCTCCAAAGCCACACCTCC  726

seq1  TGATTCTTCTCAAACAGTTGCATCTACTAGGGGCTAAGTATTCAAAAGTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTTCTCAAACAGTTGCATCTACTAGGGGCTAAGTATTCAAAAGTT  776

seq1  CGAGCCTATAGGAGCCATTCTCATTCGAACCATATGAAGATGGAGCCTGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCCTATAGGAGCCATTCTCATTCGAACCATATGAAGATGGAGCCTGG  826

seq1  GAAGAACATAGGTCCTGATGGAGTAGCCCTACCTCTGAAGAAGTGACCCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACATAGGTCCTGATGGAGTAGCCCTACCTCTGAAGAAGTGACCCT  876

seq1  AAATGGACAGAAGAAGGCACAGGCATAGTCCATGAGGCTTTTGTTTTTAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGACAGAAGAAGGCACAGGCATAGTCCATGAGGCTTTTGTTTTTAG  926

seq1  ATCAGGTTTTATGTATTCTAGGTTGGCCTTGAAGCATGACCTTGAATTTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGTTTTATGTATTCTAGGTTGGCCTTGAAGCATGACCTTGAATTTC  976

seq1  TGATCCTCCCATCTTCAACACCCCATTTCTTGATATCAGGGATATGTTGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTCCCATCTTCAACACCCCATTTCTTGATATCAGGGATATGTTGT  1026

seq1  CACCCACAGATTATGTGGCTCTGGAAATTGAACCCAGGGCTTTGTGAATG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACAGATTATGTGGCTCTGGAAATTGAACCCAGGGCTTTGTGAATG  1076

seq1  CTAAACAAACACTCTGTCAACTGAGCTACATTCCCAGACCCCACAGAGAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAAACACTCTGTCAACTGAGCTACATTCCCAGACCCCACAGAGAA  1126

seq1  GGGTCGCAAAGATGCCAAGAATGTGTTCCCAAAGTCAAGCAAGAAAGGAA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCGCAAAGATGCCAAGAATGTGTTCCCAAAGTCAAGCAAGAAAGGAA  1176

seq1  TTC  1199
      |||
seq2  TTC  1179