BAC Information

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BAC

Clone NameB6Ng01-342P01
Chromosome2 (Build37)
Map Location 69,539,789 - 69,721,932
singlet/doubletdoublet
Overlap geneFastkd1, Ppig, 4930578N16Rik, Phospho2, LOC433432, Klhl23, Ssb, Mettl5
Upstream gene4932414N04Rik, LOC667443, Lass6, Nostrin, Spc25, G6pc2, Abcb11, Dhrs9, Lrp2, Bbs5, Kbtbd10
Downstream gene4930550G17Rik, Zfp650, Myo3b, LOC100040021, Sp5, 4933404M02Rik, LOC100040068, Gad1, LOC100039766, Gorasp2, Tlk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342P01.bB6Ng01-342P01.g
ACCGA125863GA125864
length7971,066
definitionB6Ng01-342P01.b B6Ng01-342P01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,721,144 - 69,721,932)(69,539,789 - 69,540,841)
sequence
gaattcaagaccagcctggaccatatagccaggccaactagggttatata
accagacactgtctcaaaataaacaagcaaacaaatacatacatacataa
tcagttctttcatacctagtttctaatgtgcacgacatgagtttcaaagt
acctgcaacagtaattaactatcccagagttggtttaaaaatgagattta
ttaaccgggtgtggtggcgcacacctttaatcccagcactcgggaggcag
aggcaggcggatttctgagttcgaggccagcctcctggtctacaaagtga
gttccaggacagccagggctatacaaagaaatcctgtcttgaaaaaccaa
aaaaaaaaaaaaaaaaaagagagagagagatttattattttatgtgtatg
tgtttttcctgcatgtgtatatatgtgtgtaccacatatgtgcttggtgc
ctgtggagttcagaagggggtattgtttcccctgggttacaggtgtttgt
gaaccaacatgtggatgctaggaatcacatccaggccctctgctcctaac
ccagtgagctaactctccagccctataggatttttgtttgctgttttttt
ttgtttttttttttaaagatttattatcatacttaagtacactgtaactg
tcttcagacacaccaaaaagagggcatcagatctcatttactggtggttg
tgagccacccatgtgggttgctgggatttgaactcaggatcttttggaag
aatcatgcagggctctttacccgctaagccatctcagagtgttgtta
gaattctaggacatccaggactgttacacagagaaacactctcaaacaaa
aatcaatcaatccatctgacctctgaccttagctgggcatagtggcacat
gcctttaatcccggcactaggaggcagaggcaggaagatctctgtgagtt
caaggtgagcctggtctatacagtgggttccaggtcagccagagctacac
aatgagatcctgtctcaaaaacaaaacaaaacaaaacaaaatccttctaa
ctttagtccttctggctgaaggactaaaggacctctcatctctccagatc
tgtggccagaggagcaaagtgcccactctggtttgttttgtttgagacaa
ggtctctgtgtctgttcactttgaccttaaattcttggcaatcctcctgc
ttctgcctcctaaatgctgaggttataagtgcgacatcacacccttgatc
caaagtggtcttaaagagaaaaagaacaaatggataaactagaagccaga
ggtgagtttttaagcttcatgctgtaatctaagttcagaaagtaattaat
taaaggatctataattataaaaaggtatgtttctagaagctgacaatggt
gtaaaagtaatgtctaacatttaagtttcaccttttcaacctgctgaatg
gccactgaagcgatcctatccagcagcagagtgttgaggtagttagttct
ggaaagaaaagacgcgaccttggcaatattgctgtaatctatttcatcca
tgaaacgcagtaaagcagcgatggattcttcaactaaggattcgtgaagc
catttctcccttcaaagacttgagctcctcccacagaagatccaagttgg
gtgctctgttgcagccggtgacgggcccagttgatcttagttttttgaag
gaggtccagttgcttttcaagtagtactagccaggcagacgagatcactc
tgaattcagcgcatgagataatacttacaaggtcattcagtttcctgaag
tcacactggtggtagaaactgcttcaatccgggaagacgctgttttcact
tgaaggtgcggatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_69721144_69721932
seq2: B6Ng01-342P01.b_46_842 (reverse)

seq1  TAACAAC-CACTGAGATGGCTTAGCGGGT-AAGAGCACTGCCTG-CTCTT  47
      ||||||| | ||||||||||||||||||| |||||| |||| ||  ||||
seq2  TAACAACACTCTGAGATGGCTTAGCGGGTAAAGAGCCCTGCATGATTCTT  50

seq1  CC-AAAGGTCCTGAGTTCAAATCCCAGCAA-CCACAT-GGTGGCTCACAA  94
      || |||| |||||||||||||||||||||| |||||| ||||||||||||
seq2  CCAAAAGATCCTGAGTTCAAATCCCAGCAACCCACATGGGTGGCTCACAA  100

seq1  CCACCAGT-AATGAGATCTGATGCCCTC-TTTTGGTGTGTCTGAAGACAG  142
      |||||||| ||||||||||||||||||| |||||||||||||||||||||
seq2  CCACCAGTAAATGAGATCTGATGCCCTCTTTTTGGTGTGTCTGAAGACAG  150

seq1  TTACAGTGTACTTAAGTATGATAATAAATCTTTAAAAAAAAAAACAAAAA  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTGTACTTAAGTATGATAATAAATCTTTAAAAAAAAAAACAAAAA  200

seq1  AAAACAGCAAACAAAAATCCTATAGGGCTGGAGAGTTAGCTCACTGGGTT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGCAAACAAAAATCCTATAGGGCTGGAGAGTTAGCTCACTGGGTT  250

seq1  AGGAGCAGAGGGCCTGGATGTGATTCCTAGCATCCACATGTTGGTTCACA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAGAGGGCCTGGATGTGATTCCTAGCATCCACATGTTGGTTCACA  300

seq1  AACACCTGTAACCCAGGGGAAACAATACCCCCTTCTGAACTCCACAGGCA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTGTAACCCAGGGGAAACAATACCCCCTTCTGAACTCCACAGGCA  350

seq1  CCAAGCACATATGTGGTACACACATATATACACATGCAGGAAAAACACAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCACATATGTGGTACACACATATATACACATGCAGGAAAAACACAT  400

seq1  ACACATAAAATAATAAATCTCTCTCTCTCTTTTTTTTTTTTTTTTTTTTG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAAAATAATAAATCTCTCTCTCTCTTTTTTTTTTTTTTTTTTTTG  450

seq1  GTTTTTCAAGACAGGATTTCTTTGTATAGCCCTGGCTGTCCTGGAACTCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCAAGACAGGATTTCTTTGTATAGCCCTGGCTGTCCTGGAACTCA  500

seq1  CTTTGTAGACCAGGAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAGACCAGGAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTG  550

seq1  CCTCCCGAGTGCTGGGATTAAAGGTGTGCGCCACCACACCCGGTTAATAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCGAGTGCTGGGATTAAAGGTGTGCGCCACCACACCCGGTTAATAA  600

seq1  ATCTCATTTTTAAACCAACTCTGGGATAGTTAATTACTGTTGCAGGTACT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATTTTTAAACCAACTCTGGGATAGTTAATTACTGTTGCAGGTACT  650

seq1  TTGAAACTCATGTCGTGCACATTAGAAACTAGGTATGAAAGAACTGATTA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACTCATGTCGTGCACATTAGAAACTAGGTATGAAAGAACTGATTA  700

seq1  TGTATGTATGTATTTGTTTGCTTGTTTATTTTGAGACAGTGTCTGGTTAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTATGTATTTGTTTGCTTGTTTATTTTGAGACAGTGTCTGGTTAT  750

seq1  ATAACCCTAGTTGGCCTGGCTATATGGTCCAGGCTGGTCTTGAATTC  789
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCCTAGTTGGCCTGGCTATATGGTCCAGGCTGGTCTTGAATTC  797

seq1: chr2_69539789_69540841
seq2: B6Ng01-342P01.g_67_1132

seq1  GAATTCTAGGACATCCAGGACTGTTACACAGAGAAACACTCTCAAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGACATCCAGGACTGTTACACAGAGAAACACTCTCAAACAAA  50

seq1  AATCAATCAATCCATCTGACCTCTGACCTTAGCTGGGCATAGTGGCACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATCAATCCATCTGACCTCTGACCTTAGCTGGGCATAGTGGCACAT  100

seq1  GCCTTTAATCCCGGCACTAGGAGGCAGAGGCAGGAAGATCTCTGTGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAATCCCGGCACTAGGAGGCAGAGGCAGGAAGATCTCTGTGAGTT  150

seq1  CAAGGTGAGCCTGGTCTATACAGTGGGTTCCAGGTCAGCCAGAGCTACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGAGCCTGGTCTATACAGTGGGTTCCAGGTCAGCCAGAGCTACAC  200

seq1  AATGAGATCCTGTCTCAAAAACAAAACAAAACAAAACAAAATCCTTCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATCCTGTCTCAAAAACAAAACAAAACAAAACAAAATCCTTCTAA  250

seq1  CTTTAGTCCTTCTGGCTGAAGGACTAAAGGACCTCTCATCTCTCCAGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTCCTTCTGGCTGAAGGACTAAAGGACCTCTCATCTCTCCAGATC  300

seq1  TGTGGCCAGAGGAGCAAAGTGCCCACTCTGGTTTGTTTTGTTTGAGACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCAGAGGAGCAAAGTGCCCACTCTGGTTTGTTTTGTTTGAGACAA  350

seq1  GGTCTCTGTGTCTGTTCACTTTGACCTTAAATTCTTGGCAATCCTCCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTGTGTCTGTTCACTTTGACCTTAAATTCTTGGCAATCCTCCTGC  400

seq1  TTCTGCCTCCTAAATGCTGAGGTTATAAGTGCGACATCACACCCTTGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTCCTAAATGCTGAGGTTATAAGTGCGACATCACACCCTTGATC  450

seq1  CAAAGTGGTCTTAAAGAGAAAAAGAACAAATGGATAAACTAGAAGCCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGGTCTTAAAGAGAAAAAGAACAAATGGATAAACTAGAAGCCAGA  500

seq1  GGTGAGTTTTTAAGCTTCATGCTGTAATCTAAGTTCAGAAAGTAATTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTTTTTAAGCTTCATGCTGTAATCTAAGTTCAGAAAGTAATTAAT  550

seq1  TAAAGGATCTATAATTATAAAAAGGTATGTTTCTAGAAGCTGACAATGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGATCTATAATTATAAAAAGGTATGTTTCTAGAAGCTGACAATGGT  600

seq1  GTAAAAGTAATGTCTAACATTTAAGTTTCACCTTTTCAACCTGCTGAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGTAATGTCTAACATTTAAGTTTCACCTTTTCAACCTGCTGAATG  650

seq1  GCCACTGAAGCGATCCTATCCAGCAGCAGAGTGTTGAGGTAGTTAGTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGAAGCGATCCTATCCAGCAGCAGAGTGTTGAGGTAGTTAGTTCT  700

seq1  GGAAAGAAAAGACGCGACCTTGGCAATATTGCTGTAATCTATTTCATCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAAAGACGCGACCTTGGCAATATTGCTGTAATCTATTTCATCCA  750

seq1  TGAAACGCAGTAAAGCAGCGATGGATTCTTCAACTAAGGATTCGTGAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACGCAGTAAAGCAGCGATGGATTCTTCAACTAAGGATTCGTGAAGC  800

seq1  CA-TTCTCCCTTCAAAGACTTGAGCTCCTCCCACAGAAGATCCAAGTT-G  848
      || ||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CATTTCTCCCTTCAAAGACTTGAGCTCCTCCCACAGAAGATCCAAGTTGG  850

seq1  GTGCTCTGTTGCAGCCGGTGAC-GGCCCAGTTGATC-TAG-TTTTTGAAG  895
      |||||||||||||||||||||| ||||||||||||| ||| |||||||||
seq2  GTGCTCTGTTGCAGCCGGTGACGGGCCCAGTTGATCTTAGTTTTTTGAAG  900

seq1  GAGGTCCAGTTGC-TTTCCAGTAGTACTAGCCAGGCAGACGAGATCACTC  944
      ||||||||||||| |||| |||||||||||||||||||||||||||||||
seq2  GAGGTCCAGTTGCTTTTCAAGTAGTACTAGCCAGGCAGACGAGATCACTC  950

seq1  TGAATCCAGCGCATGAGAT-ATAC-TACCAAGTCATTCAGTTCCCTGAAG  992
      ||||| ||||||||||||| |||| ||| | ||||||||||| |||||||
seq2  TGAATTCAGCGCATGAGATAATACTTACAAGGTCATTCAGTTTCCTGAAG  1000

seq1  TCACACT-GTGGTAG-AACTGCTTCAATCCGGGAGACCGCTG-TTTCACT  1039
      ||||||| ||||||| ||||||||||||||||||   ||||| |||||||
seq2  TCACACTGGTGGTAGAAACTGCTTCAATCCGGGAAGACGCTGTTTTCACT  1050

seq1  --GAGGTGCGGATGTG  1053
         |||||||||||||
seq2  TGAAGGTGCGGATGTG  1066