BAC Information

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BAC

Clone NameB6Ng01-342P17
Chromosome2 (Build37)
Map Location 143,225,439 - 143,435,041
singlet/doubletdoublet
Overlap geneLOC668915, LOC668916, Pcsk2
Upstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor
Downstream geneBfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342P17.bB6Ng01-342P17.g
ACCGA125893GA125894
length5491,060
definitionB6Ng01-342P17.b B6Ng01-342P17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,434,487 - 143,435,041)(143,225,439 - 143,226,490)
sequence
attaaaggcattgccagttatgtgcagtgtattacagttagcacaacaca
gggtagttggagattaagtgagccccattggttcaaaagtagtcaggagt
tgtatggataggaacacaagtgtaattgccaaagacctctttgcctgtta
gatacatatactcctctctgtagtaaacggcagccatggagaatgattct
gtatttgaacggcatcgcacagaacacaggagactgatagagatttgtaa
attccccagccctgagatctggtgttgataagaatggagatgatatggtg
ggatgtctgagagagccaggatgagatgcctgccttccaaaaatttaaac
agcaaaagacaatgtggttggagaatagaccaaccacatagatgtgggat
atgggatttatcacctgaagtttgttcactgtactggtcagcttagtagt
taggagccttctggctggcctgctttgcttgtttgtatccacgtttacgt
gtgtgggtagaagttaaaatatgtaggtaatgtctatttcacctgatac
gaattcattcttagaacaactggagcaggtgcttccatgtgctttcagac
gtcagcactgtatttccatgatgctagtgggcagtagctgctcaaagtgt
agtcatgactactgaccgtgaccaatatcctgaaatccggagtctgttag
actagcactttcttgtttatcttcctcatttttctggttacaataatctt
ctctctacatgggctttagtcatcaaatccagaggttaacagggaaaaca
aaaacaacccaggctcaccccatgttgaccaatgattgagaatctatctg
tatagagacttgggccaattgtgttagtactgacctcttatggggctgct
ttatggaggtctggttgatctaattgaatgtttccatacttaatattatg
ccaccaagcaatatgaaaatttcaactgcttctctgggatggttaactca
attgttttgagtcccagatctttatcttcaccacccaccatttacattcc
aacagcaaagaaatcaaggttatgtctaatgaatgacttgaattatagat
gtgcaatgacgtacaaaatacaatttatcactcaaaattttccacatggt
gttttagctaggagaaaatgagtacttctttttcttatagccataaatag
ctataactttcaaaatggaccgaaactttaacctagctccttaggagtca
gatttcagggttcatttgaagatggaactgttggtccaagagacaagcat
atgtggctggaaatgcccaggagacgtgtgaaaaccatgctgagattcct
gtttgtgagcttggctttttttgtgaggtaaaatggtagtggttctgctt
cttctccataaatacttgtcagaactaaccatgtcacaatagtataattg
accaccccataatttgagagtgatttatcaacatttagcaatttacataa
gatcatttgcagaaaaacaatgaacatcattcattcaacttccatcttga
gcgtttttcaaccactactttttcttgtgagcttaagatgagttttgacg
taaagatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143434487_143435041
seq2: B6Ng01-342P17.b_50_604 (reverse)

seq1  GTATCAGCTGAAATAGACATTACCTACCTATTTTAACTTCTACCCACACA  50
      ||||||| ||||||||||||||||||| ||||||||||||||||||||||
seq2  GTATCAGGTGAAATAGACATTACCTACATATTTTAACTTCTACCCACACA  50

seq1  CGTAAACGTGGATACAAACAAGCAAAGCAGGCCAGCCAGAAGGCTCCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAACGTGGATACAAACAAGCAAAGCAGGCCAGCCAGAAGGCTCCTAA  100

seq1  CTACTAAGCTGACCAGTACAGTGAACAAACTTCAGGTGATAAATCCCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAAGCTGACCAGTACAGTGAACAAACTTCAGGTGATAAATCCCATA  150

seq1  TCCCACATCTATGTGGTTGGTCTATTCTCCAACCACATTGTCTTTTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACATCTATGTGGTTGGTCTATTCTCCAACCACATTGTCTTTTGCTG  200

seq1  TTTAAATTTTTGGAAGGCAGGCATCTCATCCTGGCTCTCTCAGACATCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTTTTGGAAGGCAGGCATCTCATCCTGGCTCTCTCAGACATCCC  250

seq1  ACCATATCATCTCCATTCTTATCAACACCAGATCTCAGGGCTGGGGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATCATCTCCATTCTTATCAACACCAGATCTCAGGGCTGGGGAATT  300

seq1  TACAAATCTCTATCAGTCTCCTGTGTTCTGTGCGATGCCGTTCAAATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATCTCTATCAGTCTCCTGTGTTCTGTGCGATGCCGTTCAAATACA  350

seq1  GAATCATTCTCCATGGCTGCCGTTTACTACAGAGAGGAGTATATGTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATTCTCCATGGCTGCCGTTTACTACAGAGAGGAGTATATGTATCT  400

seq1  AACAGGCAAAGAGGTCTTTGGCAATTACACTTGTGTTCCTATCCATACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCAAAGAGGTCTTTGGCAATTACACTTGTGTTCCTATCCATACAA  450

seq1  CTCCTGACTACTTTTGAACCAATGGGGCTCACTTAATCTCCAACTACCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGACTACTTTTGAACCAATGGGGCTCACTTAATCTCCAACTACCCT  500

seq1  GTGTTGTGCTAACTGTAATACACTGCACATAACTGGCAATGCCTTTAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTGCTAACTGTAATACACTGCACATAACTGGCAATGCCTTTAATG  550

seq1  AATTC  555
      |||||
seq2  AATTC  555

seq1: chr2_143225439_143226490
seq2: B6Ng01-342P17.g_70_1129

seq1  GAATTCATTCTTAGAACAACTGGAGCAGGTGCTTCCATGTGCTTTCAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTTAGAACAACTGGAGCAGGTGCTTCCATGTGCTTTCAGAC  50

seq1  GTCAGCACTGTATTTCCATGATGCTAGTGGGCAGTAGCTGCTCAAAGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCACTGTATTTCCATGATGCTAGTGGGCAGTAGCTGCTCAAAGTGT  100

seq1  AGTCATGACTACTGACCGTGACCAATATCCTGAAATCCGGAGTCTGTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGACTACTGACCGTGACCAATATCCTGAAATCCGGAGTCTGTTAG  150

seq1  ACTAGCACTTTCTTGTTTATCTTCCTCATTTTTCTGGTTACAATAATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCACTTTCTTGTTTATCTTCCTCATTTTTCTGGTTACAATAATCTT  200

seq1  CTCTCTACATGGGCTTTAGTCATCAAATCCAGAGGTTAACAGGGAAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTACATGGGCTTTAGTCATCAAATCCAGAGGTTAACAGGGAAAACA  250

seq1  AAAACAACCCAGGCTCACCCCATGTTGACCAATGATTGAGAATCTATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACCCAGGCTCACCCCATGTTGACCAATGATTGAGAATCTATCTG  300

seq1  TATAGAGACTTGGGCCAATTGTGTTAGTACTGACCTCTTATGGGGCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGACTTGGGCCAATTGTGTTAGTACTGACCTCTTATGGGGCTGCT  350

seq1  TTATGGAGGTCTGGTTGATCTAATTGAATGTTTCCATACTTAATATTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGAGGTCTGGTTGATCTAATTGAATGTTTCCATACTTAATATTATG  400

seq1  CCACCAAGCAATATGAAAATTTCAACTGCTTCTCTGGGATGGTTAACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAAGCAATATGAAAATTTCAACTGCTTCTCTGGGATGGTTAACTCA  450

seq1  ATTGTTTTGAGTCCCAGATCTTTATCTTCACCACCCACCATTTACATTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTGAGTCCCAGATCTTTATCTTCACCACCCACCATTTACATTCC  500

seq1  AACAGCAAAGAAATCAAGGTTATGTCTAATGAATGACTTGAATTATAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAAAGAAATCAAGGTTATGTCTAATGAATGACTTGAATTATAGAT  550

seq1  GTGCAATGACGTACAAAATACAATTTATCACTCAAAATTTTCCACATGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAATGACGTACAAAATACAATTTATCACTCAAAATTTTCCACATGGT  600

seq1  GTTTTAGCTAGGAGAAAATGAGTACTTCTTTTTCTTATAGCCATAAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGCTAGGAGAAAATGAGTACTTCTTTTTCTTATAGCCATAAATAG  650

seq1  CTATAACTTTCAAAATGGACCGAAACTTTAACCTAGCTCCTTAGGAGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACTTTCAAAATGGACCGAAACTTTAACCTAGCTCCTTAGGAGTCA  700

seq1  GATTTCAGGGTTCATTTGAAGATGGAACTGTTGGTCCAAGAGACAAGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAGGGTTCATTTGAAGATGGAACTGTTGGTCCAAGAGACAAGCAT  750

seq1  ATGTGGCTGGAAATGCCCAGGAGACGTGTGAAAACCATGCTGAGATTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCTGGAAATGCCCAGGAGACGTGTGAAAACCATGCTGAGATTCCT  800

seq1  GTTTGTGAGCTTGGC-TTTTTTGTGAGGTAAAATGGTAGTGGTTCTGCTT  849
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTTTGTGAGCTTGGCTTTTTTTGTGAGGTAAAATGGTAGTGGTTCTGCTT  850

seq1  CTTCTCCAT-AATACTTGTCAGAAACTAACCATGTCACAATAGTATAATT  898
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  CTTCTCCATAAATACTTGTCAG-AACTAACCATGTCACAATAGTATAATT  899

seq1  GAC--ACCCAT-ATTTGAGAAGTGA-TTATCAACAATTAGCAATTTACAT  944
      |||   ||||| ||||||| ||||| ||||||||| ||||||||||||||
seq2  GACCACCCCATAATTTGAG-AGTGATTTATCAACATTTAGCAATTTACAT  948

seq1  AAAGATCA-TTGCAG-AAAACAATGAACATCATTCATTCAAC-TCCATCC  991
       ||||||| |||||| |||||||||||||||||||||||||| |||||| 
seq2  -AAGATCATTTGCAGAAAAACAATGAACATCATTCATTCAACTTCCATCT  997

seq1  TGAAGCGTTTT--CACCACTACTTTT--CTGTGAGCTTTAGGATGAGTTT  1037
      || ||||||||   ||||||||||||   ||||||| ||| |||||||||
seq2  TG-AGCGTTTTTCAACCACTACTTTTTCTTGTGAGC-TTAAGATGAGTTT  1045

seq1  GAAGGTAAAGATATT  1052
        | |||||||||||
seq2  TGACGTAAAGATATT  1060