BAC Information

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BAC

Clone NameB6Ng01-343C14
Chromosome2 (Build37)
Map Location 146,004,773 - 146,120,684
singlet/doubletdoublet
Overlap geneInsm1
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563
Downstream geneA230067G21Rik, LOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343C14.bB6Ng01-343C14.g
ACCGA126014GA126015
length1,2111,067
definitionB6Ng01-343C14.b B6Ng01-343C14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,119,475 - 146,120,684)(146,004,773 - 146,005,842)
sequence
gaattctgagggcaaagtattctagtaccatttgtttaattgtacacaag
atatgtttactgcctagaagaaaatcacttaccaaaaggagagaactgat
tttaaataataacctaaatccaaaggatactcataaaagcaatacagttc
agtttgcttctaccgccatagaaacacacatataaataaatgggccttct
gaattccgtatagatttcttgctttctcaccttaaagttttattacattt
ttattaatgaattgatgtgaaggggtagcatatgggttatgccacatatg
tgaaggtcataggacgacttacttgcagaagtcagttctctcccagcatg
tgagttctagggatcagattcaggtctccggcttggcagcaggcaccttt
actcactgcaccatctctctgaccccaccttcccagtttaatctgttccc
atcctataatccattttgcatagctttcaggaatcatgagttttgatgta
cttcagaatttcattgtctttttaggtgaatttatgtttttacactggaa
gaagtttaaaaaaaaaaaaaagctactggaagccatatagtttacattgc
tgcagtttccttaaggagaatgaatggtttggaaggtagtctttaaattt
tggcctttaagttagatgagtgatcttcttctataggaaaaaggtttctg
tcttgagtaatgagagccagacttgtagctttgggtgactcttggtcatt
ggaaggatgtttgaaatgcatctacattgcttcctttgcatttaggttga
cctctggcaacagtctttcagcactgctgtggatggctatagaatgccca
aagcatatagaaaaaacaaaagcattttttaaaagctggatgtttcaaat
ggcaacttggcttctctgagaggtctgtgacccactgacaggagaggggg
cagcaatgtttggcccacacagcatctttgtcatgtcctcatgcgtatta
acagtactctcgtagtgctgcaaggagtgctgattttcatttgaagtgca
gccctccaccagaagcagatcatacttgagctgttttgtctcttgctgcc
ttactttcttcgccacagcgagagttctttctgcaagaagcaatcgatgc
ctctattctttcacgcagctgcagtcagtcatgtgaggccgagcacttag
tggcattacac
gaattctgtccctgtgggaagttctgttgtttaaaacagctatacatcaa
caatacccatagactctgtagtaggtggtgttggacatagcgacagggaa
taagactaatcctttccaggtcatgaaccaaaaaaaaggctgttgggagg
gaaaacagagtcaaaggctgtctagtcattctacaggtggtacaaaggac
acttggccctgtggtgaaacattccatctcgcctcaggctgtgtgcatct
caagcctaagcagctaccacttgctcgagagctcagtgaccagtgtccca
gcctactgtcagagccaagccttgaagcggaattctggagagccaccctc
tgctccatactgactcctgtccatctgagcatctcttggctatcactgtt
catctcagacttgtgttatgggggcgggcgtcaaagtcccgtatagattt
tccttcttacgtcttattgtatacccaccggtcagcatgtgattgacagt
tattatttatgagcttaaaataatatctgaagaaatgacagttactcata
gggtcaccaaactgcttaaacataaacacctctttcccaaactccaggaa
acaactcggttggactattgtgattacaattgcttgaataaatacatttc
agaaattctgttctcggtctgctgagccatgagaagtagtgtctctggct
tcctaaatttctttattgcacactaacaattgctagagatgctttgaagc
cacagggcacagggagtgtcacatgtgcagaaataccagtcctttccttc
tgggcctggatcttcttaggcttccttttgaggggtattttgtacatgtt
tgtttaatttttttaaacatttttttcatccccaaaacaatctatgtact
ttttacagaaaaatattttcaaggccaagtaggatatagaacccatatgt
tatagaatatagaaatacttaatatagagccctcaattgcactacccaga
tttcagatccttgagatctggacaggtctgcactgcagagcttccttctc
ttagatgtacaatacgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_146119475_146120684
seq2: B6Ng01-343C14.b_49_1259 (reverse)

seq1  GTGTAATGCCACCTAAGTGCTCTGCCTCACATGACTGGCTGCAGGCTGC-  49
      ||||||||||| |||||||||| |||||||||||||| ||||| ||||| 
seq2  GTGTAATGCCA-CTAAGTGCTCGGCCTCACATGACTGACTGCA-GCTGCG  48

seq1  TG-AAGATTAGAGCCATCGATCGCTCCCTGCAGAA--GACTCTCGCTGT-  95
      || |||| ||||| ||||||| ||| | |||||||   ||||||||||| 
seq2  TGAAAGAATAGAGGCATCGATTGCTTCTTGCAGAAAGAACTCTCGCTGTG  98

seq1  GCGAAAGGAAAGTAA-GCAGC-AGAGAC-AAACAGCTCAAGTATTGATCT  142
      |||||  |||||||| ||||| |||||| |||||||||||||| ||||||
seq2  GCGAA--GAAAGTAAGGCAGCAAGAGACAAAACAGCTCAAGTA-TGATCT  145

seq1  GC-TCTGGTGGAGGGCTGCACTTCCAAATGAAAATCAGCACTCCTTTGCA  191
      || |||||||||||||||||||| |||||||||||||||||||| |||||
seq2  GCTTCTGGTGGAGGGCTGCACTT-CAAATGAAAATCAGCACTCC-TTGCA  193

seq1  GCACCTACGAGGGTTACTG-TAATACGCATGGGGACATGACAAAGATGCT  240
      ||| ||||||| | ||||| ||||||||||| ||||||||||||||||||
seq2  GCA-CTACGAGAG-TACTGTTAATACGCATGAGGACATGACAAAGATGCT  241

seq1  GTGTGGGCCAAACATTGCTGCCCCCTCTCCTGTCAGTGGGTCACAGACCT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGCCAAACATTGCTGCCCCCTCTCCTGTCAGTGGGTCACAGACCT  291

seq1  CTCAGAGAAGCCAAGTTGCCATTTGAAACATCCAGCTTTTAAAAAATGCT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGAAGCCAAGTTGCCATTTGAAACATCCAGCTTTTAAAAAATGCT  341

seq1  TTTGTTTTTTCTATATGCTTTGGGCATTCTATAGCCATCCACAGCAGTGC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTCTATATGCTTTGGGCATTCTATAGCCATCCACAGCAGTGC  391

seq1  TGAAAGACTGTTGCCAGAGGTCAACCTAAATGCAAAGGAAGCAATGTAGA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGACTGTTGCCAGAGGTCAACCTAAATGCAAAGGAAGCAATGTAGA  441

seq1  TGCATTTCAAACATCCTTCCAATGACCAAGAGTCACCCAAAGCTACAAGT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTCAAACATCCTTCCAATGACCAAGAGTCACCCAAAGCTACAAGT  491

seq1  CTGGCTCTCATTACTCAAGACAGAAACCTTTTTCCTATAGAAGAAGATCA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCTCATTACTCAAGACAGAAACCTTTTTCCTATAGAAGAAGATCA  541

seq1  CTCATCTAACTTAAAGGCCAAAATTTAAAGACTACCTTCCAAACCATTCA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTAACTTAAAGGCCAAAATTTAAAGACTACCTTCCAAACCATTCA  591

seq1  TTCTCCTTAAGGAAACTGCAGCAATGTAAACTATATGGCTTCCAGTAGCT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTAAGGAAACTGCAGCAATGTAAACTATATGGCTTCCAGTAGCT  641

seq1  TTTTTTTTTTTTTAAACTTCTTCCAGTGTAAAAACATAAATTCACCTAAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTAAACTTCTTCCAGTGTAAAAACATAAATTCACCTAAA  691

seq1  AAGACAATGAAATTCTGAAGTACATCAAAACTCATGATTCCTGAAAGCTA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAATGAAATTCTGAAGTACATCAAAACTCATGATTCCTGAAAGCTA  741

seq1  TGCAAAATGGATTATAGGATGGGAACAGATTAAACTGGGAAGGTGGGGTC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAATGGATTATAGGATGGGAACAGATTAAACTGGGAAGGTGGGGTC  791

seq1  AGAGAGATGGTGCAGTGAGTAAAGGTGCCTGCTGCCAAGCCGGAGACCTG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGATGGTGCAGTGAGTAAAGGTGCCTGCTGCCAAGCCGGAGACCTG  841

seq1  AATCTGATCCCTAGAACTCACATGCTGGGAGAGAACTGACTTCTGCAAGT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGATCCCTAGAACTCACATGCTGGGAGAGAACTGACTTCTGCAAGT  891

seq1  AAGTCGTCCTATGACCTTCACATATGTGGCATAACCCATATGCTACCCCT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCGTCCTATGACCTTCACATATGTGGCATAACCCATATGCTACCCCT  941

seq1  TCACATCAATTCATTAATAAAAATGTAATAAAACTTTAAGGTGAGAAAGC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCAATTCATTAATAAAAATGTAATAAAACTTTAAGGTGAGAAAGC  991

seq1  AAGAAATCTATACGGAATTCAGAAGGCCCATTTATTTATATGTGTGTTTC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATCTATACGGAATTCAGAAGGCCCATTTATTTATATGTGTGTTTC  1041

seq1  TATGGCGGTAGAAGCAAACTGAACTGTATTGCTTTTATGAGTATCCTTTG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCGGTAGAAGCAAACTGAACTGTATTGCTTTTATGAGTATCCTTTG  1091

seq1  GATTTAGGTTATTATTTAAAATCAGTTCTCTCCTTTTGGTAAGTGATTTT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGGTTATTATTTAAAATCAGTTCTCTCCTTTTGGTAAGTGATTTT  1141

seq1  CTTCTAGGCAGTAAACATATCTTGTGTACAATTAAACAAATGGTACTAGA  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGGCAGTAAACATATCTTGTGTACAATTAAACAAATGGTACTAGA  1191

seq1  ATACTTTGCCCTCAGAATTC  1210
      ||||||||||||||||||||
seq2  ATACTTTGCCCTCAGAATTC  1211

seq1: chr2_146004773_146005842
seq2: B6Ng01-343C14.g_68_1134

seq1  GAATTCTGTCCCTGTGGGAAGTTCTGTTGTTTAAAACAGCTATACATCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCCCTGTGGGAAGTTCTGTTGTTTAAAACAGCTATACATCAA  50

seq1  CAATACCCATAGACTCTGTAGTAGGTGGTGTTGGACATAGCGACAGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACCCATAGACTCTGTAGTAGGTGGTGTTGGACATAGCGACAGGGAA  100

seq1  TAAGACTAATCCTTTCCAGGTCATGAACCAAAAAAAAGGCTGTTGGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTAATCCTTTCCAGGTCATGAACCAAAAAAAAGGCTGTTGGGAGG  150

seq1  GAAAACAGAGTCAAAGGCTGTCTAGTCATTCTACAGGTGGTACAAAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGAGTCAAAGGCTGTCTAGTCATTCTACAGGTGGTACAAAGGAC  200

seq1  ACTTGGCCCTGTGGTGAAACATTCCATCTCGCCTCAGGCTGTGTGCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCCCTGTGGTGAAACATTCCATCTCGCCTCAGGCTGTGTGCATCT  250

seq1  CAAGCCTAAGCAGCTACCACTTGCTCGAGAGCTCAGTGACCAGTGTCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTAAGCAGCTACCACTTGCTCGAGAGCTCAGTGACCAGTGTCCCA  300

seq1  GCCTACTGTCAGAGCCAAGCCTTGAAGCGGAATTCTGGAGAGCCACCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACTGTCAGAGCCAAGCCTTGAAGCGGAATTCTGGAGAGCCACCCTC  350

seq1  TGCTCCATACTGACTCCTGTCCATCTGAGCATCTCTTGGCTATCACTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCATACTGACTCCTGTCCATCTGAGCATCTCTTGGCTATCACTGTT  400

seq1  CATCTCAGACTTGTGTTATGGGGGCGGGCGTCAAAGTCCCGTATAGATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCAGACTTGTGTTATGGGGGCGGGCGTCAAAGTCCCGTATAGATTT  450

seq1  TCCTTCTTACGTCTTATTGTATACCCACCGGTCAGCATGTGATTGACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTACGTCTTATTGTATACCCACCGGTCAGCATGTGATTGACAGT  500

seq1  TATTATTTATGAGCTTAAAATAATATCTGAAGAAATGACAGTTACTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTATGAGCTTAAAATAATATCTGAAGAAATGACAGTTACTCATA  550

seq1  GGGTCACCAAACTGCTTAAACATAAACACCTCTTTCCCAAACTCCAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCACCAAACTGCTTAAACATAAACACCTCTTTCCCAAACTCCAGGAA  600

seq1  ACAACTCGGTTGGACTATTGTGATTACAATTGCTTGAATAAATACATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCGGTTGGACTATTGTGATTACAATTGCTTGAATAAATACATTTC  650

seq1  AGAAATTCTGTTCTCGGTCTGCTGAGCCATGAGAAGTAGTGTCTCTGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTCTGTTCTCGGTCTGCTGAGCCATGAGAAGTAGTGTCTCTGGCT  700

seq1  TCCTAAATTTCTTTATTGCACACTAACAATTGCTAGAGATGCTTTGAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAATTTCTTTATTGCACACTAACAATTGCTAGAGATGCTTTGAAGC  750

seq1  CACAGGGCACAGGGAGTGTCACATGTGCAGAAATACCAGTCCTTTCCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGCACAGGGAGTGTCACATGTGCAGAAATACCAGTCCTTTCCTTC  800

seq1  TGGGCCTGGATCTTCTTAGGCTTCCTTTTGAGGGGTATTTTGTACATGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTGGATCTTCTTAGGCTTCCTTTTGAGGGGTATTTTGTACATGTT  850

seq1  TGTTTAATTTTTTTAAACATTTTTTTCATCCCCAAAACAATCTATGTACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATTTTTTTAAACATTTTTTTCATCCCCAAAACAATCTATGTACT  900

seq1  TTTTACAGAAAAATATTTTCAAGGCCAAGTAGGATATAGAACCCATATGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAGAAAAATATTTTCAAGGCCAAGTAGGATATAGAACCCATATGT  950

seq1  TATAGAATATAGAAATACTTAATATAGAGCCCTCAATTGCACTACCCAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAATATAGAAATACTTAATATAGAGCCCTCAATTGCACTACCCAGA  1000

seq1  TTTCAGATCCTTGAGATCCTGGAACAAGGTCCTGCACTGCAGAGCTTCC-  1049
      ||||||||||||||||| |||||   |||| |||||||||||||||||| 
seq2  TTTCAGATCCTTGAGAT-CTGGA--CAGGT-CTGCACTGCAGAGCTTCCT  1046

seq1  TCTCTTAGAATGTAC-ATACGC  1070
      |||||||| |||||| ||||||
seq2  TCTCTTAG-ATGTACAATACGC  1067