BAC Information

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BAC

Clone NameB6Ng01-343L16
Chromosome2 (Build37)
Map Location 141,420,118 - 141,519,983
singlet/doubletdoublet
Overlap genenone
Upstream geneFlrt3
Downstream geneLOC668913, LOC668914, Kif16b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343L16.bB6Ng01-343L16.g
ACCGA126433GA126434
length1,2171,047
definitionB6Ng01-343L16.b B6Ng01-343L16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,518,762 - 141,519,983)(141,420,118 - 141,421,165)
sequence
gaattccacatggccaagaaagacttggtaaatttatgtcctgaatataa
gtaatcaattagctatgagttctgggcaattgacaattgagaagaacatg
ttaaacagtagaaggatgtcattcaagatttcaaatatgagatattctaa
acaatttggtttattcaacaaacaaaacaacaaagaagagagagaagcca
agaagagagagaaaaaggagataaaagtaagaggctgataaaacagcaaa
gaataaagattacttcttatttatcaattaaaagatgcataaggaaatct
ggcattttggacaatttctacattttgataaggacatcattttaagactc
ttaatgttctgtgtttacatgcaatctataccttaatccaagtttgggat
agaggttgatttaaaacatgataactgtatgcatcatatggaccctattt
ggattctacgtacccaaatacacagaaaacaaatgagataacaggaaaaa
catgagttatgtctacataattcctcctactaatgttttatggatttttt
ttctcatagagtttctgtcttttagaagcacattcttaacaaccaggtag
atactgaaatagcctcagggctaggacagcaaggtctggggaagagaaga
cacctacaagtgaatctaatagtgaatgtgcagcccatgaagtgctacac
agaagaagttctatgcaagggaggtccttcaatggcacagacttttaata
aaattttaccagcaagtaagggcatgttttgcaacaatcaagatgtatcc
agctcatctcttgcaccagagcctagggcaagtgtaaaagcgtacctatt
tgtcatgcttagttatcctgtaattattgcatgcctcctactccctccct
cctttacatcacagaaaggcaaaattcctaaacattttttctattgatta
atgaatttcaattttctttaaaaagattttttcattgacacagtacaaaa
tcatgttgccaattagattctccatcaactgtaatagtgataataaaata
taagttattgggaaagaatgaaaccaacatcagtgagtgatattttgtac
aaatcaaattcttgttaacagttatcaagatgactactacaaaaaaattt
tctagaattattgtcaggcatgtatcaggattgtacatatatatatagtg
caatactcttctcaagg
gaattccctaggttttttttgaaacctctttctcagtgtagttaaataga
aagaaaaaaagaaagacaagaatacacagattctgcttgtactatttttt
ttttctagaaaaaaaaatgaggacttttggttaaagtaatttgggtattg
tcactaaatttctttttttttttagttttctaaattcactttttagttgt
gggttagttttacatttatgtaaggctttaaggaacagatcttcctgggc
tgaattttgagtccgtatgtaactcaaaactgaacaaagtctgtatgtca
agaatcagtcctgtgaatctattaaacatcttcacaaagaaatagaattt
ggtagcaaagaaagaatagcaccttaaaatgggttctagattctagtttt
gcttccctgtcagtgaggcttatgactttggctaagtcattctatggttc
tcagtgacatcacctataaaataaaagcttgagattcaattctcagctaa
agtaatgctacccgttgacgttgacatcatgccatcccacaagggtgcaa
tgcttaatttgcctttgccactcattgagtaccacgggacaatacttggc
agattgctctctttatttcttcctgacaaatagccaaatgctttggcagc
ttggaacttttattgctgactttcctgccattcctgacagatggatttga
caggaccattggctcgcaaccacatcctgctcttctactcttaaaaaatg
aaagccatggtcattacaggaacaaacatacaagctcccacttttacaac
agcaatgatattttatctctttatctggacatgaaatgccaaaaagtttt
gatgattacctaataaactttcacctaaaaactttctattttataaggat
tttaaaactatcatgtacaaaccctacagtattcttaattaatgggccta
aaagtgaaatactttgccaacacatgtcactcatctctctctctctctct
ctctctctctctctctctctctcgttgtctctcccttctttcctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_141518762_141519983
seq2: B6Ng01-343L16.b_50_1266 (reverse)

seq1  CCTTG---AAAGTATTGCA-TATATAT-TATGTACAATCCTGATACATTT  45
      |||||   | ||||||||| ||||||| |||||||||||||||||||  |
seq2  CCTTGAGAAGAGTATTGCACTATATATATATGTACAATCCTGATACA--T  48

seq1  GCTTTACAATAAATCTAGGAAAATTTTTTTTGTAGTAGGTCATCTTGATA  95
      || | ||||||| |||||  ||| ||||||||||||| ||||||||||| 
seq2  GCCTGACAATAATTCTAG--AAAATTTTTTTGTAGTA-GTCATCTTGAT-  94

seq1  AACTGTTTAACAGAATTTTGATTTTGTACAAAATTATTCACTCACTGATG  145
      ||||| ||||||  | ||||| ||||||||||||   |||||||||||||
seq2  AACTG-TTAACAAGAATTTGA-TTTGTACAAAAT--ATCACTCACTGATG  140

seq1  TTTGTTTCATTCTTTCCCAATAACTTATATTTTA-TATCACTTATTACAG  194
      || ||||||||||||||||||||||||||||||| |||||| ||||||||
seq2  TTGGTTTCATTCTTTCCCAATAACTTATATTTTATTATCAC-TATTACAG  189

seq1  TTGATGGAGAATCTAATTGGCAACATGATTTTTGTACTGTGTCAATGAAA  244
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTGATGGAGAATCTAATTGGCAACATGA-TTTTGTACTGTGTCAATGAAA  238

seq1  AAATCTTTTTAAAGAAAATTGAAATTCATTAATCAATAGAAAAAATGTTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTTTAAAGAAAATTGAAATTCATTAATCAATAGAAAAAATGTTT  288

seq1  AGGAATTTTGCC-TTCTGTGATGTAAAGGAGGGAGGGAGTAGGAGGCATG  343
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGGAATTTTGCCTTTCTGTGATGTAAAGGAGGGAGGGAGTAGGAGGCATG  338

seq1  CAATAATTACAGGATAACTAAGCATGACAAATAGGTACGCTTTTACACTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATTACAGGATAACTAAGCATGACAAATAGGTACGCTTTTACACTT  388

seq1  GCCCTAGGCTCTGGTGCAAGAGATGAGCTGGATACATCTTGATTGTTGCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAGGCTCTGGTGCAAGAGATGAGCTGGATACATCTTGATTGTTGCA  438

seq1  AAACATGCCCTTACTTGCTGGTAAAATTTTATTAAAAGTCTGTGCCATTG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGCCCTTACTTGCTGGTAAAATTTTATTAAAAGTCTGTGCCATTG  488

seq1  AAGGACCTCCCTTGCATAGAACTTCTTCTGTGTAGCACTTCATGGGCTGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCTCCCTTGCATAGAACTTCTTCTGTGTAGCACTTCATGGGCTGC  538

seq1  ACATTCACTATTAGATTCACTTGTAGGTGTCTTCTCTTCCCCAGACCTTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCACTATTAGATTCACTTGTAGGTGTCTTCTCTTCCCCAGACCTTG  588

seq1  CTGTCCTAGCCCTGAGGCTATTTCAGTATCTACCTGGTTGTTAAGAATGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTAGCCCTGAGGCTATTTCAGTATCTACCTGGTTGTTAAGAATGT  638

seq1  GCTTCTAAAAGACAGAAACTCTATGAGAAAAAAAATCCATAAAACATTAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAAAAGACAGAAACTCTATGAGAAAAAAAATCCATAAAACATTAG  688

seq1  TAGGAGGAATTATGTAGACATAACTCATGTTTTTCCTGTTATCTCATTTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGAATTATGTAGACATAACTCATGTTTTTCCTGTTATCTCATTTG  738

seq1  TTTTCTGTGTATTTGGGTACGTAGAATCCAAATAGGGTCCATATGATGCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTGTATTTGGGTACGTAGAATCCAAATAGGGTCCATATGATGCA  788

seq1  TACAGTTATCATGTTTTAAATCAACCTCTATCCCAAACTTGGATTAAGGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTATCATGTTTTAAATCAACCTCTATCCCAAACTTGGATTAAGGT  838

seq1  ATAGATTGCATGTAAACACAGAACATTAAGAGTCTTAAAATGATGTCCTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTGCATGTAAACACAGAACATTAAGAGTCTTAAAATGATGTCCTT  888

seq1  ATCAAAATGTAGAAATTGTCCAAAATGCCAGATTTCCTTATGCATCTTTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAATGTAGAAATTGTCCAAAATGCCAGATTTCCTTATGCATCTTTT  938

seq1  AATTGATAAATAAGAAGTAATCTTTATTCTTTGCTGTTTTATCAGCCTCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATAAATAAGAAGTAATCTTTATTCTTTGCTGTTTTATCAGCCTCT  988

seq1  TACTTTTATCTCCTTTTTCTCTCTCTTCTTGGCTTCTCTCTCTTCTTTGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTATCTCCTTTTTCTCTCTCTTCTTGGCTTCTCTCTCTTCTTTGT  1038

seq1  TGTTTTGTTTGTTGAATAAACCAAATTGTTTAGAATATCTCATATTTGAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTGTTGAATAAACCAAATTGTTTAGAATATCTCATATTTGAA  1088

seq1  ATCTTGAATGACATCCTTCTACTGTTTAACATGTTCTTCTCAATTGTCAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGAATGACATCCTTCTACTGTTTAACATGTTCTTCTCAATTGTCAA  1138

seq1  TTGCCCAGAACTCATAGCTAATTGATTACTTATATTCAGGACATAAATTT  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCAGAACTCATAGCTAATTGATTACTTATATTCAGGACATAAATTT  1188

seq1  ACCAAGTCTTTCTTGGCCATGTGGAATTC  1222
      |||||||||||||||||||||||||||||
seq2  ACCAAGTCTTTCTTGGCCATGTGGAATTC  1217

seq1: chr2_141420118_141421165
seq2: B6Ng01-343L16.g_66_1112

seq1  GAATTCCCTAGGTTTTTTTTGAAACCTCTTTCTCAGTGTAGTTAAATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAGGTTTTTTTTGAAACCTCTTTCTCAGTGTAGTTAAATAGA  50

seq1  AAGAAAAAAAGAAAGACAAGAATACACAGATTCTGCTTGTACTATTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAAGAAAGACAAGAATACACAGATTCTGCTTGTACTATTTTTT  100

seq1  TTTTCTAGAAAAAAAAATGAGGACTTTTGGTTAAAGTAATTTGGGTATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGAAAAAAAAATGAGGACTTTTGGTTAAAGTAATTTGGGTATTG  150

seq1  TCACTAAATTTCTTTTTTTTTTTAGTTTTCTAAATTCACTTTTTAGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAAATTTCTTTTTTTTTTTAGTTTTCTAAATTCACTTTTTAGTTGT  200

seq1  GGGTTAGTTTTACATTTATGTAAGGCTTTAAGGAACAGATCTTCCTGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAGTTTTACATTTATGTAAGGCTTTAAGGAACAGATCTTCCTGGGC  250

seq1  TGAATTTTGAGTCCGTATGTAACTCAAAACTGAACAAAGTCTGTATGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTGAGTCCGTATGTAACTCAAAACTGAACAAAGTCTGTATGTCA  300

seq1  AGAATCAGTCCTGTGAATCTATTAAACATCTTCACAAAGAAATAGAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAGTCCTGTGAATCTATTAAACATCTTCACAAAGAAATAGAATTT  350

seq1  GGTAGCAAAGAAAGAATAGCACCTTAAAATGGGTTCTAGATTCTAGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCAAAGAAAGAATAGCACCTTAAAATGGGTTCTAGATTCTAGTTTT  400

seq1  GCTTCCCTGTCAGTGAGGCTTATGACTTTGGCTAAGTCATTCTATGGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCTGTCAGTGAGGCTTATGACTTTGGCTAAGTCATTCTATGGTTC  450

seq1  TCAGTGACATCACCTATAAAATAAAAGCTTGAGATTCAATTCTCAGCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGACATCACCTATAAAATAAAAGCTTGAGATTCAATTCTCAGCTAA  500

seq1  AGTAATGCTACCCGTTGACGTTGACATCATGCCATCCCACAAGGGTGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGCTACCCGTTGACGTTGACATCATGCCATCCCACAAGGGTGCAA  550

seq1  TGCTTAATTTGCCTTTGCCACTCATTGAGTACCACGGGACAATACTTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAATTTGCCTTTGCCACTCATTGAGTACCACGGGACAATACTTGGC  600

seq1  AGATTGCTCTCTTTATTTCTTCCTGACAAATAGCCAAATGCTTTGGCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGCTCTCTTTATTTCTTCCTGACAAATAGCCAAATGCTTTGGCAGC  650

seq1  TTGGAACTTTTATTGCTGACTTTCCTGCCATTCCTGACAGATGGATTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACTTTTATTGCTGACTTTCCTGCCATTCCTGACAGATGGATTTGA  700

seq1  CAGGACCATTGGCTCGCAACCACATCCTGCTCTTCTACTCTTAAAAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCATTGGCTCGCAACCACATCCTGCTCTTCTACTCTTAAAAAATG  750

seq1  AAAGCCATGGTCATTACAGGAACAAACATACAAGCTCCCACTTTTACAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCATGGTCATTACAGGAACAAACATACAAGCTCCCACTTTTACAAC  800

seq1  AGCAATGATATTTTATCTCTTTATCTGGACATGAAATGCCAAAAAGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGATATTTTATCTCTTTATCTGGACATGAAATGCCAAAAAGTTTT  850

seq1  GATGATTACCTAATAAACTTTCACCTAAAAACTTTCTATTTTATAAGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTACCTAATAAACTTTCACCTAAAAACTTTCTATTTTATAAGGAT  900

seq1  TTTAAAACTATCATGTACAAACCCTACAAGTATTCTTAATTAATGGGCCT  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTAAAACTATCATGTACAAACCCTAC-AGTATTCTTAATTAATGGGCCT  949

seq1  AAAAGTGAAATACTTTGCCAACACATGTTCACTCATTCTCTCTCTCTCTC  1000
      ||||||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  AAAAGTGAAATACTTTGCCAACACATG-TCACTCA-TCTCTCTCTCTCTC  997

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCC--CTTCTCTCTC  1048
      ||||||||||||||||||||||||||  | ||||||||  |||  |||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCGTTGTCTCTCCCTTCTTTCCTCTC  1047