BAC Information

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BAC

Clone NameB6Ng01-343M01
Chromosome2 (Build37)
Map Location 106,623,852 - 106,625,024
singlet/doubletsinglet
Overlap genenone
Upstream geneElp4, Immp1l, LOC100043402, Dph4, LOC668765, Dcdc5, 9330126M15
Downstream geneC130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343M01.bB6Ng01-343M01.g
ACCGA126451GA126452
length1,1491,154
definitionB6Ng01-343M01.b B6Ng01-343M01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcaattctgagccccattttttaatggggttatttgatt
ttctggagtccaccctcttgagttctttatatatattggatattagtccc
ctatctgatttaggatagataaagatcctttccaaatctgttggtggcct
ttttgtcttattgacagtatcttttgccttgcagaagctttgcagtttca
tgaggtcccatttgtagattctcgatcttacagcacaagccattgctgtt
ctattcaggaattttccccctatgcccatatcttctaggcttttccccac
tttctcctctataagtttcagtatctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataggaatggatcgattcgc
attcttctacatgataaccaccagttgtgccagcaccatttgttgaaaat
gctgtctttttttccactggatggttttacctcccttgtcgaagatcaag
tggccataggtgtgtgggttcatttctgggtcttcaattctattccattg
gtctacttgtctgtcactataccagtaccatgcagattttatcacaattg
ctctgtagtaaagctttaggtcagggatggtgattccaccagaggttctt
ttatccttgagaagagtttttgctatcctaggttttttgttattccagat
gaatttgcagattgctctttctaattcgttgaagaattgagttggaattt
tgatggggattgcattgaatctgtagattgcttttggcaagatagccatt
ttttacaatgttgatcctgccaatccatgagcatgggagatctttccatc
ttctgagatcttctttaatttctttcttcagagacttgaagtttttatca
tacagatctttcacttccttagttagagtcacgccaagatattttatatt
atttgtgactattgagaaggggtggttgtttcctaaatttctttctcagc
tgtttattccttgtgtaagaagaaaggcattgacatgattgagtttaatt
ttatatctgctatacttcacaaaagcttgttactcaaggcttaggcagtc
tcctgggtgatattttataggtcacagatagcatactaccatcgtcatc
gaattcatggcagacctcgttaaacaggactactaccgtttcccttctgt
gtccaaattgaaaccagaggactttgacaatgttcagtccctcctgacaa
acagtatttacttgcaagattcagaggtaaccgtgaaaggattcaggata
tacggtgcaccctggtaagtgctcattcagcaggtttcctctgttttcaa
gttgggaacaaaaaaacaaaagaaaacaaaaaacaagaaacaacaaccaa
aaaaaaaaaagaaaagaaaaacccatctttgggacttagctgctttccat
gaaaatgaataaataggttggaaggaaaggctgttggttcattggcaacc
aaacacatcatctggtcccactgtaaatcacagtattgggtattttcatc
atcaaacagacccctttaggtaacaaaaacgaaattgaagctttagtaga
catatatgtagttaaatgactggagctctacatgtatctgtgcaaacata
aacttgccaaagactaatctgttagtcttgacagatttagctactctgaa
cattccatgagagtacttcccctttcagtttgtacgaaagcagtcctgaa
atactttgcatataggtcaagctttctcaagtctctgtacacatcagact
ggttctgtgaagatagcttttgaaatctagtctctaagacctccctgatt
ctcctcttttagagaaaccccagaaatcagtgtttttataaaggcattcc
agatgagacagatgctcaggcactttggaggttgttgattgacagtccag
tactagaagtctagaactgtgctctggaatgcatgctatgggccccacgg
tgggactctggatcttggttttcattgccaggttttaaaggagttactcc
atgttgctgagccttagattttgtaccttttaaatggtgagaataaatag
taccttttatgaggtcatgaagggttatgtagtagcacatggaatggatt
agagcacctggtatggcttacggtatatttactacttctgtctggcttta
ccaccgcgatgtggggtggactgagaaaggtacttagtccagaacatgtt
tcatctctgaatggaatgttgactgggaatatctgttatcggacagttcc
aaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_106623852_106625024
seq2: B6Ng01-343M01.g_65_1218

seq1  GAATTCATGGCAGACCTCGTTAAACAGGACTACTACCGTTTCCCTTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGCAGACCTCGTTAAACAGGACTACTACCGTTTCCCTTCTGT  50

seq1  GTCCAAATTGAAACCAGAGGACTTTGACAATGTTCAGTCCCTCCTGACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAATTGAAACCAGAGGACTTTGACAATGTTCAGTCCCTCCTGACAA  100

seq1  ACAGTATTTACTTGCAAGATTCAGAGGTAACCGTGAAAGGATTCAGGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATTTACTTGCAAGATTCAGAGGTAACCGTGAAAGGATTCAGGATA  150

seq1  TACGGTGCACCCTGGTAAGTGCTCATTCAGCAGGTTTCCTCTGTTTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGTGCACCCTGGTAAGTGCTCATTCAGCAGGTTTCCTCTGTTTTCAA  200

seq1  GTTGGGAACAAAAAAACAAAAGAAAACAAAAAACAAGAAACAACAACCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGAACAAAAAAACAAAAGAAAACAAAAAACAAGAAACAACAACCAA  250

seq1  AAAAAAAAAAGAAAAGAAAAACCCATCTTTGGGACTTAGCTGCTTTCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGAAAAGAAAAACCCATCTTTGGGACTTAGCTGCTTTCCAT  300

seq1  GAAAATGAATAAATAGGTTGGAAGGAAAGGCTGTTGGTTCATTGGCAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGAATAAATAGGTTGGAAGGAAAGGCTGTTGGTTCATTGGCAACC  350

seq1  AAACACATCATCTGGTCCCACTGTAAATCACAGTATTGGGTATTTTCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATCATCTGGTCCCACTGTAAATCACAGTATTGGGTATTTTCATC  400

seq1  ATCAAACAGACCCCTTTAGGTAACAAAAACGAAATTGAAGCTTTAGTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACAGACCCCTTTAGGTAACAAAAACGAAATTGAAGCTTTAGTAGA  450

seq1  CATATATGTAGTTAAATGACTGGAGCTCTACATGTATCTGTGCAAACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATGTAGTTAAATGACTGGAGCTCTACATGTATCTGTGCAAACATA  500

seq1  AACTTGCCAAAGACTAATCTGTTAGTCTTGACAGATTTAGCTACTCTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCCAAAGACTAATCTGTTAGTCTTGACAGATTTAGCTACTCTGAA  550

seq1  CATTCCATGAGAGTACTTCCCCTTTCAGTTTGTACGAAAGCAGTCCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCATGAGAGTACTTCCCCTTTCAGTTTGTACGAAAGCAGTCCTGAA  600

seq1  ATACTTTGCATATAGGTCAAGCTTTCTCAAGTCTCTGTACACATCAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTGCATATAGGTCAAGCTTTCTCAAGTCTCTGTACACATCAGACT  650

seq1  GGTTCTGTGAAGATAGCTTTTGAAATCTAGTCTCTAAGACCTCCCTGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGTGAAGATAGCTTTTGAAATCTAGTCTCTAAGACCTCCCTGATT  700

seq1  CTCCTCTTTTAGAGAAACCCCAGAAATCAGTGTTTTTATAAAGGCATTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTTTTAGAGAAACCCCAGAAATCAGTGTTTTTATAAAGGCATTCC  750

seq1  AGATGAGACAGATGCTCAGGCACTTTGGAGGTTGTTGATTGACAGTCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGACAGATGCTCAGGCACTTTGGAGGTTGTTGATTGACAGTCCAG  800

seq1  TACTAGAAGTCTAGAACTGTGCTCTGGAATGCATGCTATGGGCCCCACGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGAAGTCTAGAACTGTGCTCTGGAATGCATGCTATGGGCCCCACGG  850

seq1  TGGGACTCTGGATCTTGGTTTTCATTGCCAGGTTTTAAAGGAGTTACTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTCTGGATCTTGGTTTTCATTGCCAGGTTTTAAAGGAGTTACTCC  900

seq1  ATGTTGCTGAGCCTTAGATTTTGTACCTTTAAAATGGTGAGAATAAATAG  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATGTTGCTGAGCCTTAGATTTTGTACCTTTTAAATGGTGAGAATAAATAG  950

seq1  TACCTTTTATGAGGTCATTGAAGGGTTATGTAGGTAGCACATGGAATGGA  1000
      ||||||||||||||||| |||||||||||||| |||||||||||||||||
seq2  TACCTTTTATGAGGTCA-TGAAGGGTTATGTA-GTAGCACATGGAATGGA  998

seq1  TTTAGAAGCAACCCTGGTAATTGGCTTACGGTAATATTTACTACTTTCCT  1050
       |||| ||||  |||||||  ||||||||||| |||||||||||||  ||
seq2  -TTAG-AGCA--CCTGGTA--TGGCTTACGGT-ATATTTACTACTT--CT  1039

seq1  GTTCTTGGCTTTACCACCGCGATGTGGGGTGGACTTGAGAAAGTTACTTA  1100
      ||   ||||||||||||||||||||||||||||| |||||||| ||||||
seq2  GT--CTGGCTTTACCACCGCGATGTGGGGTGGAC-TGAGAAAGGTACTTA  1086

seq1  GCCCAGACCAATGTTTTCATCTCTGAAATGAGAATGTTTGACTGGAGATT  1150
      | ||||| | ||| ||||||||||| |||| ||||| |||||||| || |
seq2  GTCCAGAAC-ATG-TTTCATCTCTG-AATG-GAATG-TTGACTGG-GAAT  1130

seq1  ATCTG-TATCGGACAATTCCAAGA  1173
      ||||| ||||||||| ||||||||
seq2  ATCTGTTATCGGACAGTTCCAAGA  1154