BAC Information

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BAC

Clone NameB6Ng01-343O16
Chromosome2 (Build37)5 (Build37)
Map Location 58,685,555 - 58,685,946148,321,756 - 148,322,962
singlet/doubletsingletsinglet
Overlap geneBC062650
Upstream geneGalnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c, LOC667062, Acvr1, LOC674940, Upp2
Downstream genePkp4, LOC625354, 2310032F03Rik, LOC100038999, LOC100039016, Tanc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343O16.bB6Ng01-343O16.g
ACCGA126564GA126565
length9561,192
definitionB6Ng01-343O16.b B6Ng01-343O16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(58,685,555 - 58,685,946)(148,321,756 - 148,322,962)
sequence
gaattcagacaacctgctaagtggtacccagagggatgacacgaagcccg
gggagaggcaactggcaggggaacaggaacctataccaaaaggcgccatt
ataggcttggccacattcttatcagcatcctgagtgaaacagacatgctg
ggtccttctgcacatgaccctgagcacaacactccctcctaataattgtc
aagtcccacccacactgcctctgcccctgagcagctgggctattttgtag
actggactgatcacctgccaccagcctgttaaagcctgcggggtaggggt
aggggcggcggtacgggggggggggggaaggacacatgcaccactatgtt
catagcagccttatttataatagccagaagctggaaagaaaccagatgcc
cctcaacagaggaatggatacagaaaatgtggtacatttacacaatggag
tactactcagctattaaaaagaatgaatttatgaaattcctaggcaaatg
gatggacctggagggcatcatcctgagtgagttaacccaatcacaaaatg
aactcacacaatatgtactcactgataagtggatattagcccagaaactt
agaatacccaagatataagatacaatttgtggaacacatgaaactcaaga
agaaccaagtccaaagtgtggacactttgcccgttcctagaaatgggaac
aaaacacccatggaaggagttacagagacacaacttggaactgagatgaa
aggatggaccatctagagactgccatatctggggttccatccccataatc
agcttccaaacgatgataccattgcatacactagcaagattttgctgaaa
ggacccagatataagctgtctctttgtgagaccattctgggggcctaagc
aaaccacagaagtggaatactcatcaatcagcttattgaatggacacagg
gccccc
gaattccaattccggggtgtgacaccctcacacagacatacatgcacgca
aaaccagatggtatagaagattgcgcaccctcccccatttgttttgtttt
tcagacttcctttttgtttgtgtttcttaagtgttgctttctggctttct
caatgcatactttcccaattttttttttaataattattgttacttttgct
gaactagagtcattttttaggttctttttaggtagaattgtcatctgaat
agcagataagcatggatactaacctgtattcaaattatctcatcagaatt
taattacttactttcccagagtctactcgtttatgcctatctttgttttt
tatccctagtaaatgagatgggtttagtgtgtgttgtatttcattgctcc
cctccctccttcagctgggctgctgggatgatttggatcaagtatttttg
ccggtatttagtttacatatttattgtaagactggacctttaagtgtaca
tggggctcacttgactttggtgtattcactaggttgggcagttgtaaccg
tgaactgtagataagccgtgtgccttttgtagtctgtgcttttctcttac
cctgatctgacttaagagttatggcccttagaactgtaattctgctttcc
tactgcataggcttggccatgctgtgcccttcatgtacatttggtactaa
gtggccactttcacttaatgttgtgtgatccccatagtagtgtgggttca
tgtccattacaatcctccaacttccatatttcacagagcaatttctcagt
tggtagacatttgaggttttttctgagtttgaacagtgatgatgatcatg
tgctctgggcatttcatatacaagtgtttgtgtggacctaagttcttact
gcgactgggaaatatacataggagtgggattccaagacaaatggtacgtt
taacaatttgaagaaccaaactctttttcaaggtgactacagtattttac
atttctgccagaaggatggagacctgctttccctcttcctcactaacagc
atttgtgctatgctcagaatgttcttgtggtctgtgtcatgtccctagga
tcctgtgtttctttgcagtggttggtgacttgtatgtgctctgaaagaaa
ccccctgtccattggcttgattaatgtaattcacgatcttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_58685555_58685946
seq2: B6Ng01-343O16.b_371_764

seq1  GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA  50
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAAGGACACATGCACCACTATGTTCATAGCAGCCTTATTTATAATAGCCA  50

seq1  GAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAA  100
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAAGCTGGAAAGAAACCAGATGCCCCTCAACAGAGGAATGGATACAGAAA  100

seq1  ATGTGGTACATCTACACAATGGAGTACTATTCAGCTATTAAAAAGAATGA  150
      ||||||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  ATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA  150

seq1  ATTTATGAAATTCCTAGGCAAATGGATGGTCCTGGAGGGCATCATCCTGA  200
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGA  200

seq1  GTGAGGTAACACATTCAC-AAAGGAACTCACACAATATGTACTCACTGAT  249
      ||||| |||| || |||| ||| |||||||||||||||||||||||||||
seq2  GTGAGTTAACCCAATCACAAAATGAACTCACACAATATGTACTCACTGAT  250

seq1  AAGTGGATATTAGCCC-CAAACCTAGGATACCCAAGATATAAGATACAAT  298
      ||||||||||||||||  |||| ||| |||||||||||||||||||||||
seq2  AAGTGGATATTAGCCCAGAAACTTAGAATACCCAAGATATAAGATACAAT  300

seq1  TTGCTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACT  348
      |||   ||||||||||||||||||||||  ||| |  |||||||||||||
seq2  TTGTGGAACACATGAAACTCAAGAAGAACCAAGTCCAAAGTGTGGACACT  350

seq1  ATGCCCCTCCTTAGAATTGGGAACAAAACACCCATGGAAGGAGT  392
       ||||| | | ||||| |||||||||||||||||||||||||||
seq2  TTGCCCGTTCCTAGAAATGGGAACAAAACACCCATGGAAGGAGT  394

seq1: chr5_148321756_148322962
seq2: B6Ng01-343O16.g_65_1256

seq1  GAATTCCAATTCCGGGGTGTGACACCCTCACACAGACATACATGCACGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATTCCGGGGTGTGACACCCTCACACAGACATACATGCACGCA  50

seq1  AAACCAGATGGTATAGAAGATTGCGCACCCTCCCCCATTTGTTTTGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGATGGTATAGAAGATTGCGCACCCTCCCCCATTTGTTTTGTTTT  100

seq1  TCAGACTTCCTTTTTGTTTGTGTTTCTTAAGTGTTGCTTTCTGGCTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTTCCTTTTTGTTTGTGTTTCTTAAGTGTTGCTTTCTGGCTTTCT  150

seq1  CAATGCATACTTTCCCAATTTTTTTTTTAATAATTATTGTTACTTTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCATACTTTCCCAATTTTTTTTTTAATAATTATTGTTACTTTTGCT  200

seq1  GAACTAGAGTCATTTTTTAGGTTCTTTTTAGGTAGAATTGTCATCTGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGAGTCATTTTTTAGGTTCTTTTTAGGTAGAATTGTCATCTGAAT  250

seq1  AGCAGATAAGCATGGATACTAACCTGTATTCAAATTATCTCATCAGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATAAGCATGGATACTAACCTGTATTCAAATTATCTCATCAGAATT  300

seq1  TAATTACTTACTTTCCCAGAGTCTACTCGTTTATGCCTATCTTTGTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACTTACTTTCCCAGAGTCTACTCGTTTATGCCTATCTTTGTTTTT  350

seq1  TATCCCTAGTAAATGAGATGGGTTTAGTGTGTGTTGTATTTCATTGCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTAGTAAATGAGATGGGTTTAGTGTGTGTTGTATTTCATTGCTCC  400

seq1  CCTCCCTCCTTCAGCTGGGCTGCTGGGATGATTTGGATCAAGTATTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCCTTCAGCTGGGCTGCTGGGATGATTTGGATCAAGTATTTTTG  450

seq1  CCGGTATTTAGTTTACATATTTATTGTAAGACTGGACCTTTAAGTGTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTATTTAGTTTACATATTTATTGTAAGACTGGACCTTTAAGTGTACA  500

seq1  TGGGGCTCACTTGACTTTGGTGTATTCACTAGGTTGGGCAGTTGTAACCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTCACTTGACTTTGGTGTATTCACTAGGTTGGGCAGTTGTAACCG  550

seq1  TGAACTGTAGATAAGCCGTGTGCCTTTTGTAGTCTGTGCTTTTCTCTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGTAGATAAGCCGTGTGCCTTTTGTAGTCTGTGCTTTTCTCTTAC  600

seq1  CCTGATCTGACTTAAGAGTTATGGCCCTTAGAACTGTAATTCTGCTTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATCTGACTTAAGAGTTATGGCCCTTAGAACTGTAATTCTGCTTTCC  650

seq1  TACTGCATAGGCTTGGCCATGCTGTGCCCTTCATGTACATTTGGTACTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCATAGGCTTGGCCATGCTGTGCCCTTCATGTACATTTGGTACTAA  700

seq1  GTGGCCACTTTCACTTAATGTTGTGTGATCCCCATAGTAGTGTGGGTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCACTTTCACTTAATGTTGTGTGATCCCCATAGTAGTGTGGGTTCA  750

seq1  TGTCCATTACAATCCTCCAACTTCCATATTTCACAGAGCAATTTCTCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATTACAATCCTCCAACTTCCATATTTCACAGAGCAATTTCTCAGT  800

seq1  TGGTAGACATTTGAGGTTTTTTCTGAGTTTGAACAGTGATGATGATCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGACATTTGAGGTTTTTTCTGAGTTTGAACAGTGATGATGATCATG  850

seq1  TGCTCTGGGCA-TTCATATACAAGTGTTTGTGTGGACCTAAGTTCTTACT  899
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGGGCATTTCATATACAAGTGTTTGTGTGGACCTAAGTTCTTACT  900

seq1  GCGACTGGGAAATATACATAGGAGTGGGATTCCAAGACAAATGGTAACGT  949
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCGACTGGGAAATATACATAGGAGTGGGATTCCAAGACAAATGGT-ACGT  949

seq1  TTAACAATTTGAAGAACCAAACTCTTTTTTCAAGGTGACTACAGTATTTT  999
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTAACAATTTGAAGAACCAAACTC-TTTTTCAAGGTGACTACAGTATTTT  998

seq1  ACATTTCTGCCAGAAGGAATGAGACCTGCTTTCCCTCTTCCTCACTAACA  1049
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  ACATTTCTGCCAGAAGGATGGAGACCTGCTTTCCCTCTTCCTCACTAACA  1048

seq1  GCATTTGTTGCTATGCTCAGTATGTTCTTGTGGGTCTGTGTTCATGTCCC  1099
      ||||||| |||||||||||| |||||||||| |||||||| |||||||||
seq2  GCATTTG-TGCTATGCTCAGAATGTTCTTGT-GGTCTGTG-TCATGTCCC  1095

seq1  TAGTGATACTGTGTTTCTTTGCATGTGGTTGGTTGACATTTGTATGTTGT  1149
      ||| ||| ||||||||||||||| |||||||| ||||  ||||||||   
seq2  TAG-GATCCTGTGTTTCTTTGCA-GTGGTTGG-TGAC--TTGTATGT--G  1138

seq1  CTCTG-AAGAAACCTCTGGTCGTATTGCTTGATTAGTTGTTTAATTCACC  1198
      ||||| |||||||| |  |||   | |||||||||    | |||||||| 
seq2  CTCTGAAAGAAACCCCCTGTCCATTGGCTTGATTA---ATGTAATTCAC-  1184

seq1  GGTTCTTAT  1207
       | ||||||
seq2  -GATCTTAT  1192