BAC Information

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BAC

Clone NameB6Ng01-343P01
Chromosome2 (Build37)
Map Location 115,353,719 - 115,485,788
singlet/doubletdoublet
Overlap geneLOC100043236, BC052040
Upstream geneAtpbd4, LOC100043219, LOC100043222, LOC100043232
Downstream geneMrg1, G630016G05Rik, 2810405F15Rik, LOC433464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343P01.bB6Ng01-343P01.g
ACCGA126579GA126580
length9561,174
definitionB6Ng01-343P01.b B6Ng01-343P01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,353,719 - 115,354,674)(115,484,607 - 115,485,788)
sequence
gaattccatacaaaagaaaattcttccatgaaaagagaaaagaaaaaaaa
aaacagttaatttctggtgtaaggaaaaatgacattccaccctccaaaat
gtgccaagctgagggaaaatgaaacacaacattctaaaggctgaagtgta
agaaaaccctctgtcttgaagacatccaaatctctctcgtttgaactatt
tacaccatatgcgtcccaataaggctcctttctgattaaataatgacaag
taagtggaaccaaagagggcttcaaagacccttgaatctttacacagctt
tttgtaatttcgtaagtgtgaaatttagctatcattatacaaatgttcta
aagcataattttcttggtctgtaaaatgtgtctaggaacatgatgttgta
ctcatggtaggcactggaaaaaataggggcgaataaattaataacaaatg
aatgtttaggaaagcgatgctaatgacatatgtgtatcttttaaatttta
aagcacaaataaatatatgtatatatgtttaatttatatatttgtggact
tagggtggacaactgtcgtcttaggccaagagttaaccaagtagcttagg
tggcatgcaagaatttacagtgctggctacacgtgtgtggagcacacaaa
ggggagaaattggacaattgctaagaatctcaattgcctggcatgctgtg
ggaaaatatttctaacaaaatgttaagtataaaaggctggagaaatgtaa
aataggaaatctttcattctaatatgaaactataccagattaaagtgggg
gaaagtcatagtggacagggtcctttttaattttgatgaaagtgagcata
tgcaattctatgtgtatgactgtgtatgcattcatgtatgtgcacatatg
tacaagatgttcatgcacatgtgtgctccgggcatgagagacgagaggtc
aacact

gaattctttatgtaatgagacagttaaaagatacatctcttcggttgtaa
ttaatctttcagctagctcgatgaacacaatggcacagggtcctgtgcca
aagtgagagagacggggttttacaacgagtcctggggcatgctcgcaagg
gcttgtggaaacaaagtgtgtttgggaagaagcacaattagtctctgaag
gaaagttaccagtgagctcattctgtgtgtgtcacccttggatgccccaa
atgacagaccagggctggaaaccacctccattgaaaacatatgacataca
ttttatatcgttggaaaatgtctttggtagccatggcctacagaagaaga
gtggaagaaaggaagggggaacctaatacacttctgagaactgaagagat
tacttctcccgtgtagtaattaagtgtaaattaaaagaccatttaattac
attttttgctgactttagcagaaaaaaaaattaatggtcgccaataaaaa
tgaatatgaaccaaaaacatctataaattaggtgtcattatgcagaggat
aataaagaacatccacgtttagacaatcgcatacagctgtgataccctga
gtttagggactgctgtggcctcgtgaactcccctcttcctgttcctgcat
tatgaggggcaagcgctgactggagaacaaagtcctgtcagcagaccgcc
ctttaaactgctcagccctggaaggcgagctcgctgctttatttctttgc
tcatttttctcccagattggtacatctgaagtaccttgctacagatctat
acggcactaccgttcagcaagaaaaagagagttatattttccccttgagt
taggacgcctcatgacaaatgataatggataatcaataaagtgggaaata
tgaggccacaactttatgaagccaagagacatattacttctgaacacact
catttcccttaacaaagtcactactagactgtgcctatatctgaaagaaa
atcaaaggacctgcacacatcagcagtattggccactattcactttaatg
gcattttgatgattttctgctaatggtagttttatactgtagatttggac
gcctgcctactgcaaaatagttgggtgtaataacatccggaagcctaaca
gtgaacattaaagggtccttgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_115353719_115354674
seq2: B6Ng01-343P01.b_47_1002

seq1  GAATTCCATACAAAAGAAAATTCTTCCATGAAAAGAGAAAAGAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACAAAAGAAAATTCTTCCATGAAAAGAGAAAAGAAAAAAAA  50

seq1  AAACAGTTAATTTCTGGTGTAAGGAAAAATGACATTCCACCCTCCAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTAATTTCTGGTGTAAGGAAAAATGACATTCCACCCTCCAAAAT  100

seq1  GTGCCAAGCTGAGGGAAAATGAAACACAACATTCTAAAGGCTGAAGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAAGCTGAGGGAAAATGAAACACAACATTCTAAAGGCTGAAGTGTA  150

seq1  AGAAAACCCTCTGTCTTGAAGACATCCAAATCTCTCTCGTTTGAACTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACCCTCTGTCTTGAAGACATCCAAATCTCTCTCGTTTGAACTATT  200

seq1  TACACCATATGCGTCCCAATAAGGCTCCTTTCTGATTAAATAATGACAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCATATGCGTCCCAATAAGGCTCCTTTCTGATTAAATAATGACAAG  250

seq1  TAAGTGGAACCAAAGAGGGCTTCAAAGACCCTTGAATCTTTACACAGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGAACCAAAGAGGGCTTCAAAGACCCTTGAATCTTTACACAGCTT  300

seq1  TTTGTAATTTCGTAAGTGTGAAATTTAGCTATCATTATACAAATGTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAATTTCGTAAGTGTGAAATTTAGCTATCATTATACAAATGTTCTA  350

seq1  AAGCATAATTTTCTTGGTCTGTAAAATGTGTCTAGGAACATGATGTTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATAATTTTCTTGGTCTGTAAAATGTGTCTAGGAACATGATGTTGTA  400

seq1  CTCATGGTAGGCACTGGAAAAAATAGGGGCGAATAAATTAATAACAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGTAGGCACTGGAAAAAATAGGGGCGAATAAATTAATAACAAATG  450

seq1  AATGTTTAGGAAAGCGATGCTAATGACATATGTGTATCTTTTAAATTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTAGGAAAGCGATGCTAATGACATATGTGTATCTTTTAAATTTTA  500

seq1  AAGCACAAATAAATATATGTATATATGTTTAATTTATATATTTGTGGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAAATAAATATATGTATATATGTTTAATTTATATATTTGTGGACT  550

seq1  TAGGGTGGACAACTGTCGTCTTAGGCCAAGAGTTAACCAAGTAGCTTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTGGACAACTGTCGTCTTAGGCCAAGAGTTAACCAAGTAGCTTAGG  600

seq1  TGGCATGCAAGAATTTACAGTGCTGGCTACACGTGTGTGGAGCACACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGCAAGAATTTACAGTGCTGGCTACACGTGTGTGGAGCACACAAA  650

seq1  GGGGAGAAATTGGACAATTGCTAAGAATCTCAATTGCCTGGCATGCTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAAATTGGACAATTGCTAAGAATCTCAATTGCCTGGCATGCTGTG  700

seq1  GGAAAATATTTCTAACAAAATGTTAAGTATAAAAGGCTGGAGAAATGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATATTTCTAACAAAATGTTAAGTATAAAAGGCTGGAGAAATGTAA  750

seq1  AATAGGAAATCTTTCATTCTAATATGAAACTATACCAGATTAAAGTGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAAATCTTTCATTCTAATATGAAACTATACCAGATTAAAGTGGGG  800

seq1  GAAAGTCATAGTGGACAGGGTCC-TTTTAATTTTGATGAAAGTGAGCATA  849
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAAAGTCATAGTGGACAGGGTCCTTTTTAATTTTGATGAAAGTGAGCATA  850

seq1  TGCAATTCTATGTGTATGACTGTGTATGCATTCATGTATGTGCACATATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTCTATGTGTATGACTGTGTATGCATTCATGTATGTGCACATATG  900

seq1  TACAAGGATGTTCATGCACATGTGTGCTCC-GGCATGTGGAGACGAGAGG  948
      ||||| |||||||||||||||||||||||| ||||||  |||||||||||
seq2  TACAA-GATGTTCATGCACATGTGTGCTCCGGGCATG-AGAGACGAGAGG  948

seq1  TCAACACT  956
      ||||||||
seq2  TCAACACT  956


seq1: chr2_115484607_115485788
seq2: B6Ng01-343P01.g_65_1238 (reverse)

seq1  AGACAAGAACC--TTAATGTTCACTGTTTGCCTTCGGGGATGTTTATTAC  48
      ||||||| |||  ||||||||||||||| | ||||  ||||| |||||||
seq2  AGACAAGGACCCTTTAATGTTCACTGTTAGGCTTC-CGGATG-TTATTAC  48

seq1  ACACAACTATTTTGCAGTA-GCA-GCGT-CAAATCTACAGTATAAAACTA  95
      || |||||||||||||||| ||| |||| |||||||||||||||||||||
seq2  ACCCAACTATTTTGCAGTAGGCAGGCGTCCAAATCTACAGTATAAAACTA  98

seq1  CCATTAGGCAGAAAAATCAATCAAAATGCCATTAAAGTGGAATAAGTTGC  145
      |||||| |||| |||||| ||||||||||||||||||| |||| ||| ||
seq2  CCATTA-GCAG-AAAATC-ATCAAAATGCCATTAAAGT-GAAT-AGTGGC  143

seq1  CAATACTGCTGATGTGGTTGCAGGTCCTTTGATTTTCTTTCAGATTATTA  195
      ||||||||||||||||  |||||||||||||||||||||||||||   ||
seq2  CAATACTGCTGATGTG--TGCAGGTCCTTTGATTTTCTTTCAGAT--ATA  189

seq1  GGCACAGTCTAGTAGTGACTTTGTTAAGGGAAATGAGTGTTGTTCAGAAG  245
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGCACAGTCTAGTAGTGACTTTGTTAAGGGAAATGAGTG-TGTTCAGAAG  238

seq1  TAATATGTCTCTTGGCTTCATAAAGTTTGTGGCCTCATATTTCCCACTTT  295
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAATATGTCTCTTGGCTTCATAAAG-TTGTGGCCTCATATTTCCCACTTT  287

seq1  ATTGATTATCCATTATCATTTGTCATGAGGCGTCCTAACTCAAGGGGAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTATCCATTATCATTTGTCATGAGGCGTCCTAACTCAAGGGGAAA  337

seq1  ATATAACTCTCTTTTTCTTGCTGAACGGTAGTGCCGTATAGATCTGTAGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACTCTCTTTTTCTTGCTGAACGGTAGTGCCGTATAGATCTGTAGC  387

seq1  AAGGTACTTCAGATGTACCAATCTGGGAGAAAAATGAGCAAAGAAATAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTACTTCAGATGTACCAATCTGGGAGAAAAATGAGCAAAGAAATAAA  437

seq1  GCAGCGAGCTCGCCTTCCAGGGCTGAGCAGTTTAAAGGGCGGTCTGCTGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCGAGCTCGCCTTCCAGGGCTGAGCAGTTTAAAGGGCGGTCTGCTGA  487

seq1  CAGGACTTTGTTCTCCAGTCAGCGCTTGCCCCTCATAATGCAGGAACAGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTTTGTTCTCCAGTCAGCGCTTGCCCCTCATAATGCAGGAACAGG  537

seq1  AAGAGGGGAGTTCACGAGGCCACAGCAGTCCCTAAACTCAGGGTATCACA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGGAGTTCACGAGGCCACAGCAGTCCCTAAACTCAGGGTATCACA  587

seq1  GCTGTATGCGATTGTCTAAACGTGGATGTTCTTTATTATCCTCTGCATAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATGCGATTGTCTAAACGTGGATGTTCTTTATTATCCTCTGCATAA  637

seq1  TGACACCTAATTTATAGATGTTTTTGGTTCATATTCATTTTTATTGGCGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCTAATTTATAGATGTTTTTGGTTCATATTCATTTTTATTGGCGA  687

seq1  CCATTAATTTTTTTTTCTGCTAAAGTCAGCAAAAAATGTAATTAAATGGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAATTTTTTTTTCTGCTAAAGTCAGCAAAAAATGTAATTAAATGGT  737

seq1  CTTTTAATTTACACTTAATTACTACACGGGAGAAGTAATCTCTTCAGTTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATTTACACTTAATTACTACACGGGAGAAGTAATCTCTTCAGTTC  787

seq1  TCAGAAGTGTATTAGGTTCCCCCTTCCTTTCTTCCACTCTTCTTCTGTAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGTGTATTAGGTTCCCCCTTCCTTTCTTCCACTCTTCTTCTGTAG  837

seq1  GCCATGGCTACCAAAGACATTTTCCAACGATATAAAATGTATGTCATATG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGCTACCAAAGACATTTTCCAACGATATAAAATGTATGTCATATG  887

seq1  TTTTCAATGGAGGTGGTTTCCAGCCCTGGTCTGTCATTTGGGGCATCCAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATGGAGGTGGTTTCCAGCCCTGGTCTGTCATTTGGGGCATCCAA  937

seq1  GGGTGACACACACAGAATGAGCTCACTGGTAACTTTCCTTCAGAGACTAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGACACACACAGAATGAGCTCACTGGTAACTTTCCTTCAGAGACTAA  987

seq1  TTGTGCTTCTTCCCAAACACACTTTGTTTCCACAAGCCCTTGCGAGCATG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTCTTCCCAAACACACTTTGTTTCCACAAGCCCTTGCGAGCATG  1037

seq1  CCCCAGGACTCGTTGTAAAACCCCGTCTCTCTCACTTTGGCACAGGACCC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGACTCGTTGTAAAACCCCGTCTCTCTCACTTTGGCACAGGACCC  1087

seq1  TGTGCCATTGTGTTCATCGAGCTAGCTGAAAGATTAATTACAACCGAAGA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCATTGTGTTCATCGAGCTAGCTGAAAGATTAATTACAACCGAAGA  1137

seq1  GATGTATCTTTTAACTGTCTCATTACATAAAGAATTC  1182
      |||||||||||||||||||||||||||||||||||||
seq2  GATGTATCTTTTAACTGTCTCATTACATAAAGAATTC  1174


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