BAC Information

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BAC

Clone NameB6Ng01-344F03
Chromosome2 (Build37)
Map Location 151,258,968 - 151,395,222
singlet/doubletdoublet
Overlap geneLOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a
Upstream geneOTTMUSG00000015730, LOC668924, OTTMUSG00000015743, LOC545472, Cst7, 2310001A20Rik, Acss1, Vsx1, Entpd6, LOC100043605, Pygb, Abhd12, Gins1, LOC668925, 4930519N13Rik, LOC668926, Nanp, LOC433486, LOC381390, 4930442J19Rik, LOC100043839
Downstream geneSdcbp2, Snph, LOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344F03.bB6Ng01-344F03.g
ACCGA126841GA126842
length1,0781,211
definitionB6Ng01-344F03.b B6Ng01-344F03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,394,130 - 151,395,222)(151,258,968 - 151,260,201)
sequence
gaattccagaacagccacggctacaaaaaaaaaaaaaaaaaaaaaaaaaa
cagcacaaatgaaggtgaggttgatacttggacaagaaaattgttttgac
acatgtgaaaacaccacttgagttttatatgttccccgcaggcattggta
ttagagggaagaacgttgggggtacctgtaggcagaggcaatggagttgg
agactactgcttatcatcactatgaaggagcaaacagcagatgcacagtt
tctttcaatcaggtaggccatttctctacttaccaggttatcacaaactt
ggaggagttatgtaatatgaagccagttttaaaaacattccccaagttga
tcatggtagtccacgatcctctagctaggacatggcagctgcccatttaa
attcattgtagcactggttacctgtactcatccaaaccagttagaattct
attatggatcatggtgcagctccagaggctctacccctagctgaggagct
actggcaattgatgcaagagtcatttctctctcccctccagacagggtat
cactatgtagccctggatgacctggaactcactgtgtagactaggctagc
atggaactcagagatccaagtgctgggattaaaggtgtgtgtctccatgg
ccagcctaaaagtcacttttatttagaaatgccttttaacaaacttgaga
ccctttagaaacgaacagttaattgaacatacttttaaaccttactttta
aactcaagacatggatgggagtacatcacgaaaatctacagacagctgat
ggttgacgtttttagctgaaaattggaatttcaaatgaaaaccaaagttc
ttcaactgaaattagaagactgtaggaaggctgtacttgttagggtcttg
ttgtatggactggtaagctggtggctcatgatgtagtaacctcttcactc
gtgagtatgtgactagtgcttaggagactacctcagatcatgtaacactg
tgaccggtttcccgacactcactgcaggtctatgtgcagccagccctttc
agttgtcagaagacaggactactcagat
gaattctgggctgacattcagggctgtcaagagagcaatatgggcatgaa
caagggacttgtcttgtcctctcttattcttctttgtaacacttaaatgt
aacccacctccagtgaggtttccacatgtacagttctcacacctgcgtgg
taggccctgggaaagcttatttcttttcaaaaaggaatttcctttttagt
taacattttatatataaaaaacaaatagatgtatacatacaaatgggtga
gtccatttagtgtttccatatgaaaatattttatgggctgactgaccacc
tggtattagatatcccattacagggttcatccatagagaacactcaattt
tcctctttaatggtcattaattgcctctaacatttcttgtactgctcttg
tgagagttctcctgaccatgctgccacagcaacctgggttgtcatcattc
agatcttatctagaaaaccatatggtcaagagttatgattagtttccttg
aatatacaatcttgtaccatgtagcaaaaatagttaaagaaaaagaggtc
atggatttgagttgagagacacaaaaatagaaagtacataaatatggaac
acatgtatcaatttttaaaaaattgataaaagtgaaagagtttccctaat
atgaggaggatttgttggaaattttccaaatggatttttagattttcaat
aaaaatacttttatggaaatggcaacaaaagatctgctattttctatttt
atcaaataatgcatacaatgttatttttctctttacttttgccctcaaca
gatgttatgatattattagttgttcctgtgtctgtcccttcacaatatcc
cttgtattcaaagttgaatatccttgtagagaaaacactgttttaaaata
ggctataaattttatgcatggtagaaacaatgatgaatccagaaatttat
aatataaagccaataccttagatattcttaatatttgcatacttatgctt
gcatgaaaagattttatggatgtgtgtcccacaaggaaaatatctaatat
tttattaaatagtacttattaaaattttataggctagtggagattgccac
tgctgtcttacgaagaatcttgagttcattctcagcaaacgtggtggtca
tcccacgagttacgttcgatgccctctcggccaagttacatgcgacagag
cactcgcatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_151394130_151395222
seq2: B6Ng01-344F03.b_47_1124 (reverse)

seq1  ATCTGAGTTAAAGGTCCTGTC-TCTGAACAAACTGAAAGGGGCTGGGCTG  49
      ||||||||     |||||||| |||||   |||||||| ||||| |||| 
seq2  ATCTGAGT----AGTCCTGTCTTCTGA--CAACTGAAA-GGGCT-GGCT-  41

seq1  GCACATAGACCTGCCAGTGAGTGTCGGGAAACCGGTCACAGTGTTTACAT  99
      ||||||||||||| ||||||||||||||||||||||||||||| ||||||
seq2  GCACATAGACCTG-CAGTGAGTGTCGGGAAACCGGTCACAGTG-TTACAT  89

seq1  GATCTGGAGGTTAGTCTCCTAAGCACTAAGTCACATACTTCACGAGTGAA  149
      ||||| |||| |||||||||||||||| |||||||||| |||||||||||
seq2  GATCT-GAGG-TAGTCTCCTAAGCACT-AGTCACATAC-TCACGAGTGAA  135

seq1  GAGGTTACTACATCATGAGCCACCAGCTTACCAGTCCATACAACAAGACC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTACTACATCATGAGCCACCAGCTTACCAGTCCATACAACAAGACC  185

seq1  CTAACAAGTACAGCCTTCCTACAGTCTTCTAATTTCAGTTGAAGAACTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAAGTACAGCCTTCCTACAGTCTTCTAATTTCAGTTGAAGAACTTT  235

seq1  GGTTTTCATTTGAAATTCCAATTTTCAGCTAAAAACGTCAACCATCAGCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCATTTGAAATTCCAATTTTCAGCTAAAAACGTCAACCATCAGCT  285

seq1  GTCTGTAGATTTTCGTGATGTACTCCCCATCCATGTCTTGAGTTTAAAAG  349
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTCTGTAGATTTTCGTGATGTACT-CCCATCCATGTCTTGAGTTTAAAAG  334

seq1  TAAGGTTTAAAAGTATGTTCAATTAACTGTTCGTTTCTAAAGGGTCTCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTTAAAAGTATGTTCAATTAACTGTTCGTTTCTAAAGGGTCTCAA  384

seq1  GTTTGTTAAAAGGCATTTCTAAATAAAAGTGACTTTTAGGCTGGCCATGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTAAAAGGCATTTCTAAATAAAAGTGACTTTTAGGCTGGCCATGG  434

seq1  AGACACACACCTTTAATCCCAGCACTTGGATCTCTGAGTTCCATGCTAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACACCTTTAATCCCAGCACTTGGATCTCTGAGTTCCATGCTAGC  484

seq1  CTAGTCTACACAGTGAGTTCCAGGTCATCCAGGGCTACATAGTGATACCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTACACAGTGAGTTCCAGGTCATCCAGGGCTACATAGTGATACCC  534

seq1  TGTCTGGAGGGGAGAGAGAAATGACTCTTGCATCAATTGCCAGTAGCTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGAGGGGAGAGAGAAATGACTCTTGCATCAATTGCCAGTAGCTCC  584

seq1  TCAGCTAGGGGTAGAGCCTCTGGAGCTGCACCATGATCCATAATAGAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTAGGGGTAGAGCCTCTGGAGCTGCACCATGATCCATAATAGAATT  634

seq1  CTAACTGGTTTGGATGAGTACAGGTAACCAGTGCTACAATGAATTTAAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGGTTTGGATGAGTACAGGTAACCAGTGCTACAATGAATTTAAAT  684

seq1  GGGCAGCTGCCATGTCCTAGCTAGAGGATCGTGGACTACCATGATCAACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCTGCCATGTCCTAGCTAGAGGATCGTGGACTACCATGATCAACT  734

seq1  TGGGGAATGTTTTTAAAACTGGCTTCATATTACATAACTCCTCCAAGTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAATGTTTTTAAAACTGGCTTCATATTACATAACTCCTCCAAGTTT  784

seq1  GTGATAACCTGGTAAGTAGAGAAATGGCCTACCTGATTGAAAGAAACTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAACCTGGTAAGTAGAGAAATGGCCTACCTGATTGAAAGAAACTGT  834

seq1  GCATCTGCTGTTTGCTCCTTCATAGTGATGATAAGCAGTAGTCTCCAACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGCTGTTTGCTCCTTCATAGTGATGATAAGCAGTAGTCTCCAACT  884

seq1  CCATTGCCTCTGCCTACAGGTACCCCCAACGTTCTTCCCTCTAATACCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCCTCTGCCTACAGGTACCCCCAACGTTCTTCCCTCTAATACCAA  934

seq1  TGCCTGCGGGGAACATATAAAACTCAAGTGGTGTTTTCACATGTGTCAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCGGGGAACATATAAAACTCAAGTGGTGTTTTCACATGTGTCAAA  984

seq1  ACAATTTTCTTGTCCAAGTATCAACCTCACCTTCATTTGTGCTGTTTTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTTCTTGTCCAAGTATCAACCTCACCTTCATTTGTGCTGTTTTTT  1034

seq1  TTTTTTTTTTTTTTTTTTTTGTAGCCGTGGCTGTTCTGGAATTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTGTAGCCGTGGCTGTTCTGGAATTC  1078

seq1: chr2_151258968_151260201
seq2: B6Ng01-344F03.g_68_1278

seq1  GAATTCTGGGCTGACATTCAGGGCTGTCAAGAGAGCAATATGGGCATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGCTGACATTCAGGGCTGTCAAGAGAGCAATATGGGCATGAA  50

seq1  CAAGGGACTTGTCTTGTCCTCTCTTATTCTTCTTTGTAACACTTAAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGACTTGTCTTGTCCTCTCTTATTCTTCTTTGTAACACTTAAATGT  100

seq1  AACCCACCTCCAGTGAGGTTTCCACATGTACAGTTCTCACACCTGCGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACCTCCAGTGAGGTTTCCACATGTACAGTTCTCACACCTGCGTGG  150

seq1  TAGGCCCTGGGAAAGCTTATTTCTTTTCAAAAAGGAATTTCCTTTTTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCCTGGGAAAGCTTATTTCTTTTCAAAAAGGAATTTCCTTTTTAGT  200

seq1  TAACATTTTATATATAAAAAACAAATAGATGTATACATACAAATGGGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTTATATATAAAAAACAAATAGATGTATACATACAAATGGGTGA  250

seq1  GTCCATTTAGTGTTTCCATATGAAAATATTTTATGGGCTGACTGACCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTTAGTGTTTCCATATGAAAATATTTTATGGGCTGACTGACCACC  300

seq1  TGGTATTAGATATCCCATTACAGGGTTCATCCATAGAGAACACTCAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTAGATATCCCATTACAGGGTTCATCCATAGAGAACACTCAATTT  350

seq1  TCCTCTTTAATGGTCATTAATTGCCTCTAACATTTCTTGTACTGCTCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTAATGGTCATTAATTGCCTCTAACATTTCTTGTACTGCTCTTG  400

seq1  TGAGAGTTCTCCTGACCATGCTGCCACAGCAACCTGGGTTGTCATCATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTTCTCCTGACCATGCTGCCACAGCAACCTGGGTTGTCATCATTC  450

seq1  AGATCTTATCTAGAAAACCATATGGTCAAGAGTTATGATTAGTTTCCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTATCTAGAAAACCATATGGTCAAGAGTTATGATTAGTTTCCTTG  500

seq1  AATATACAATCTTGTACCATGTAGCAAAAATAGTTAAAGAAAAAGAGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACAATCTTGTACCATGTAGCAAAAATAGTTAAAGAAAAAGAGGTC  550

seq1  ATGGATTTGAGTTGAGAGACACAAAAATAGAAAGTACATAAATATGGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTTGAGTTGAGAGACACAAAAATAGAAAGTACATAAATATGGAAC  600

seq1  ACATGTATCAATTTTTAAAAAATTGATAAAAGTGAAAGAGTTTCCCTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATCAATTTTTAAAAAATTGATAAAAGTGAAAGAGTTTCCCTAAT  650

seq1  ATGAGGAGGATTTGTTGGAAATTTTCCAAATGGATTTTTAGATTTTCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAGGATTTGTTGGAAATTTTCCAAATGGATTTTTAGATTTTCAAT  700

seq1  AAAAATACTTTTATGGAAATGGCAACAAAAGATCTGCTATTTTCTATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATACTTTTATGGAAATGGCAACAAAAGATCTGCTATTTTCTATTTT  750

seq1  ATCAAATAATGCATACAATGTTATTTTTCTCTTTACTTTTGCCCTCAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATAATGCATACAATGTTATTTTTCTCTTTACTTTTGCCCTCAACA  800

seq1  GATGTTATGATATTATTAGTTGTTCCTGTGTCTGTCCCTTCACAATATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTATGATATTATTAGTTGTTCCTGTGTCTGTCCCTTCACAATATCC  850

seq1  CTTGTATTCAAAGTTGAATATCCTTGTAGAGAAAACACTGTTTTAAAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATTCAAAGTTGAATATCCTTGTAGAGAAAACACTGTTTTAAAATA  900

seq1  GGCTATAAATTTTATGCATGGTAGAAACAATGATGAATCCAGAAATTTAA  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGCTATAAATTTTATGCATGGTAGAAACAATGATGAATCCAGAAATTT-A  949

seq1  TAATATAAAGCCAATACCTTAGATATTCTTAATATTTTGCATACTTAATG  1000
      |||||||||||||||||||||||||||||||||| ||||||||||| |||
seq2  TAATATAAAGCCAATACCTTAGATATTCTTAATA-TTTGCATACTT-ATG  997

seq1  CTTGCATGAAAAGATTTTATGGATGTGTGGTCCCACAAAGAAAATATCTA  1050
      |||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  CTTGCATGAAAAGATTTTATGGATGTGT-GTCCCACAAGGAAAATATCTA  1046

seq1  ATAATTTTATTAAAATAGTACTTAATTAAAAAATATATAATAGGCTAGT-  1099
      || |||||||| ||||||||||| ||||||    || | |||||||||| 
seq2  AT-ATTTTATT-AAATAGTACTT-ATTAAA----ATTTTATAGGCTAGTG  1089

seq1  GAGA-TGCCACTGGCTGTTCTTACAGAG-ATCTTGAGTTCAATTCTCAGC  1147
      |||| ||||||| |||| ||||||  || ||||||||||| |||||||||
seq2  GAGATTGCCACT-GCTG-TCTTACGAAGAATCTTGAGTTC-ATTCTCAGC  1136

seq1  AAACACGTGGTGGTTCATCACCACCGATGTAAGCGTTCTGATGCCCTCTT  1197
      ||  ||||||||| ||||| ||| |||  ||  ||||| |||||||||| 
seq2  AA--ACGTGGTGG-TCATC-CCA-CGAGTTA--CGTTC-GATGCCCTCT-  1177

seq1  CTGGCAGCAGGTATACATGCAGACAGAGCA--CGCATGT  1234
        |||  || || ||||||| |||||||||  |||||||
seq2  -CGGC--CAAGT-TACATGC-GACAGAGCACTCGCATGT  1211