BAC Information

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BAC

Clone NameB6Ng01-344F15
Chromosome2 (Build37)
Map Location 138,237,930 - 138,376,175
singlet/doubletdoublet
Overlap genenone
Upstream geneBtbd3
Downstream geneLOC628103, C130053K05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344F15.bB6Ng01-344F15.g
ACCGA126863GA126864
length1,1581,151
definitionB6Ng01-344F15.b B6Ng01-344F15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,375,027 - 138,376,175)(138,237,930 - 138,239,083)
sequence
gaattcccgcctataaaatcattcaatttgaaaaatcagttgttctttat
aagtacctgattatagaaatatggttttttaaaactattgttttaatatt
tgttgctccatcataccaattcaggaaagactcttattaaccaatttctc
ttatgaacatacatacaaataataataataataataataataataataat
aataataataaaagcaggatctgccaggatggatcctgtctttaaaaaaa
aaaatgcagggacaaaaatggagcagagactgaagaaaaggccattcaaa
gaccggcctaactaggatccatcccatgcgcaggcactaaacactgacac
tattactgatgttatattgtgcttgcagacagaagtttaacgtggctatc
ctctgagaggctctaccagcagctgacagagacagatacaaatacttcca
gccaaccattggaatgaggacagtcacctctatggaaaagttagggaaag
gatggaatgacttgaaagggatggccaccccataggaagaacagtaacta
acctggtcccctcagaattcccagagaccaagccaccaatcaaagagtat
acatgggttggcccatcacacacacacacacacacacacacacactgccc
tgcctggcttatatgtagcagaagactgccttgtctggcctcagtgggag
aggatgcacctaattctataaagacttgatgccccagggaagggacttgc
agggtggggaaaggcatagttggcaggggtcggggggagcaccctctcag
agacaaaggggagggaaggatgaggtgaaaaattctgagggtgcagctgg
gaggaagggcaacagttggaattgtaaataaataaaacaatttaatttaa
aaaaaagtcttggtcatcagcactgtaaagcaaacacccccatcttcttc
cgatttatttaaccccctgagaacttctcttttttcacttctagtcaacc
ctattatcccacaaagcgctaaaagcaaagaatctatgagcttacttcag
tcaacactgacacagagctcaactaccaaccatattggacttcttagcca
agttcgacttccggcattttgacctttaaataaaaaaagatcttgaaagc
cagtagag
gaattcttatgtgagcactcactgctctgcaggcccagggatctaggaca
gtcagacacagaccagccacatgcaacctgctttgcctttcctcctgtct
ttctcccctccccaaactcacttcttttcatttcagctccagcgggaggg
gcaactgggggaagacatttatttcactctgtatttttccaaattcacag
gactgccatctgcagcaagccctcaggccttcctctcaaaaggatctgaa
agtttgctttcttttacttttcttttaatttttttaaagctcaagccaaa
gtaaaaagtaaacgatttaaattttcaaactatttttcttagatatggtt
ttagaggtcagagctgcgatgatgagatgttaatggagtctttttatgtc
taaagctactgtagaggtgtcgggacaatgtgcacgctttgcaaatgcct
ctggaatttagcacagaggcctgtttcaaataacagaacatgagaaaggc
aaatctgtttgcctcagctcactgactgccattcccaatgcacatgcggt
ctgtctgcattgaaaaggtttacaccgggcaggcaggaaaagaagtgctg
cagatttgagaaggaaactgtaaaagacacatgtggctggcctcagcaca
gtggggctcaacaaggggacctcttgaaagccacagcagcagtaggcatt
tagacacaggcttactctaaataggctattgcattggggcatcttccagg
tgatccattagtgtaggaatcacaggatgctagaacctggctttctggag
agcttcaacacgaagcttatttatctcggtccatctttgttacattttcc
ttctggaatgctttttattgacttttgttacttaacttgatttctgttgc
tcctgtcggcatcatttttaatgagaagtcaaactttagccaaaaagctt
cttgtgtgcttataacagatttgttcatttctgttagcttatcttaattt
tataagagaatggtgataccatgacatttcaatacgtacacatgataaga
ctttgatcatttcaccttgtctactgattttttcttaatacccaccatct
cttctgctctgaatatatctgatcatcctttcacttccatgcctccatcc
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_138375027_138376175
seq2: B6Ng01-344F15.b_48_1205 (reverse)

seq1  CTCTACTGCCTCTCAAGATC-TTTTTTATTT-AATGTCAAAATGGCCTGG  48
      |||||||| || |||||||| |||||||||| || |||||||| ||| | 
seq2  CTCTACTGGCTTTCAAGATCTTTTTTTATTTAAAGGTCAAAAT-GCCGGA  49

seq1  AGTCGAACTGTGCTTAGATGT-CAATATGGTTGGTAGTTGAGCTCTGTGT  97
      |||||||||  ||| ||| || ||||||||||||||||||||||||||||
seq2  AGTCGAACTTGGCTAAGAAGTCCAATATGGTTGGTAGTTGAGCTCTGTGT  99

seq1  CAGTGTTGACTGTAAGTAGGCTCATAGA-TCTTTGCTTTTAGCCGTTTTG  146
      |||||||||||| ||||| ||||||||| ||||||||||||| || ||||
seq2  CAGTGTTGACTG-AAGTAAGCTCATAGATTCTTTGCTTTTAG-CGCTTTG  147

seq1  TGGGAT-ATAGGGTTGACTAGAGTGGAAAAAAGAGA--GTCTCAGGGGGT  193
      |||||| |||||||||||||||   |||||||||||   |||||||||||
seq2  TGGGATAATAGGGTTGACTAGAAGTGAAAAAAGAGAAGTTCTCAGGGGGT  197

seq1  T-AATAAATCGG-AGAAGAT-GGGGTGTTTGCTTTACAGTGCTGATGACC  240
      | |||||||||| ||||||| |||||||||||||||||||||||||||||
seq2  TAAATAAATCGGAAGAAGATGGGGGTGTTTGCTTTACAGTGCTGATGACC  247

seq1  -AGACTTTTTTTTAAATTAAATTGTTTTATTTATTTAC-ATTCCAACTGT  288
       ||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAGACTTTTTTTTAAATTAAATTGTTTTATTTATTTACAATTCCAACTGT  297

seq1  TGCCCTTCCTCCCAGCTGCACCCTCAGAATTTTTCACCTCATCCTTCCCT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTCCTCCCAGCTGCACCCTCAGAATTTTTCACCTCATCCTTCCCT  347

seq1  CCCCTTTGTCTCTGAGAGGGTGCTCCCCCCGACCCCTGCCAACTATGCCT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTGTCTCTGAGAGGGTGCTCCCCCCGACCCCTGCCAACTATGCCT  397

seq1  TTCCCCACCCTGCAAGTCCCTTCCCTGGGGCATCAAGTCTTTATAGAATT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCACCCTGCAAGTCCCTTCCCTGGGGCATCAAGTCTTTATAGAATT  447

seq1  AGGTGCATCCTCTCCCACTGAGGCCAGACAAGGCAGTCTTCTGCTACATA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCATCCTCTCCCACTGAGGCCAGACAAGGCAGTCTTCTGCTACATA  497

seq1  TAAGCCAGGCAGGGCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATGGG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCAGGCAGGGCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATGGG  547

seq1  CCAACCCATGTATACTCTTTGATTGGTGGCTTGGTCTCTGGGAATTCTGA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCATGTATACTCTTTGATTGGTGGCTTGGTCTCTGGGAATTCTGA  597

seq1  GGGGACCAGGTTAGTTACTGTTCTTCCTATGGGGTGGCCATCCCTTTCAA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACCAGGTTAGTTACTGTTCTTCCTATGGGGTGGCCATCCCTTTCAA  647

seq1  GTCATTCCATCCTTTCCCTAACTTTTCCATAGAGGTGACTGTCCTCATTC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCCATCCTTTCCCTAACTTTTCCATAGAGGTGACTGTCCTCATTC  697

seq1  CAATGGTTGGCTGGAAGTATTTGTATCTGTCTCTGTCAGCTGCTGGTAGA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTTGGCTGGAAGTATTTGTATCTGTCTCTGTCAGCTGCTGGTAGA  747

seq1  GCCTCTCAGAGGATAGCCACGTTAAACTTCTGTCTGCAAGCACAATATAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCAGAGGATAGCCACGTTAAACTTCTGTCTGCAAGCACAATATAA  797

seq1  CATCAGTAATAGTGTCAGTGTTTAGTGCCTGCGCATGGGATGGATCCTAG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTAATAGTGTCAGTGTTTAGTGCCTGCGCATGGGATGGATCCTAG  847

seq1  TTAGGCCGGTCTTTGAATGGCCTTTTCTTCAGTCTCTGCTCCATTTTTGT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCCGGTCTTTGAATGGCCTTTTCTTCAGTCTCTGCTCCATTTTTGT  897

seq1  CCCTGCATTTTTTTTTTTAAAGACAGGATCCATCCTGGCAGATCCTGCTT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCATTTTTTTTTTTAAAGACAGGATCCATCCTGGCAGATCCTGCTT  947

seq1  TTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTGTATG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTGTATG  997

seq1  TATGTTCATAAGAGAAATTGGTTAATAAGAGTCTTTCCTGAATTGGTATG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCATAAGAGAAATTGGTTAATAAGAGTCTTTCCTGAATTGGTATG  1047

seq1  ATGGAGCAACAAATATTAAAACAATAGTTTTAAAAAACCATATTTCTATA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCAACAAATATTAAAACAATAGTTTTAAAAAACCATATTTCTATA  1097

seq1  ATCAGGTACTTATAAAGAACAACTGATTTTTCAAATTGAATGATTTTATA  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGTACTTATAAAGAACAACTGATTTTTCAAATTGAATGATTTTATA  1147

seq1  GGCGGGAATTC  1149
      |||||||||||
seq2  GGCGGGAATTC  1158

seq1: chr2_138237930_138239083
seq2: B6Ng01-344F15.g_66_1216

seq1  GAATTCTTATGTGAGCACTCACTGCTCTGCAGGCCCAGGGATCTAGGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATGTGAGCACTCACTGCTCTGCAGGCCCAGGGATCTAGGACA  50

seq1  GTCAGACACAGACCAGCCACATGCAACCTGCTTTGCCTTTCCTCCTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGACACAGACCAGCCACATGCAACCTGCTTTGCCTTTCCTCCTGTCT  100

seq1  TTCTCCCCTCCCCAAACTCACTTCTTTTCATTTCAGCTCCAGCGGGAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCCTCCCCAAACTCACTTCTTTTCATTTCAGCTCCAGCGGGAGGG  150

seq1  GCAACTGGGGGAAGACATTTATTTCACTCTGTATTTTTCCAAATTCACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGGGGGAAGACATTTATTTCACTCTGTATTTTTCCAAATTCACAG  200

seq1  GACTGCCATCTGCAGCAAGCCCTCAGGCCTTCCTCTCAAAAGGATCTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCATCTGCAGCAAGCCCTCAGGCCTTCCTCTCAAAAGGATCTGAA  250

seq1  AGTTTGCTTTCTTTTACTTTTCTTTTAATTTTTTTAAAGCTCAAGCCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCTTTCTTTTACTTTTCTTTTAATTTTTTTAAAGCTCAAGCCAAA  300

seq1  GTAAAAAGTAAACGATTTAAATTTTCAAACTATTTTTCTTAGATATGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAGTAAACGATTTAAATTTTCAAACTATTTTTCTTAGATATGGTT  350

seq1  TTAGAGGTCAGAGCTGCGATGATGAGATGTTAATGGAGTCTTTTTATGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGTCAGAGCTGCGATGATGAGATGTTAATGGAGTCTTTTTATGTC  400

seq1  TAAAGCTACTGTAGAGGTGTCGGGACAATGTGCACGCTTTGCAAATGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTACTGTAGAGGTGTCGGGACAATGTGCACGCTTTGCAAATGCCT  450

seq1  CTGGAATTTAGCACAGAGGCCTGTTTCAAATAACAGAACATGAGAAAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATTTAGCACAGAGGCCTGTTTCAAATAACAGAACATGAGAAAGGC  500

seq1  AAATCTGTTTGCCTCAGCTCACTGACTGCCATTCCCAATGCACATGCGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGTTTGCCTCAGCTCACTGACTGCCATTCCCAATGCACATGCGGT  550

seq1  CTGTCTGCATTGAAAAGGTTTACACCGGGCAGGCAGGAAAAGAAGTGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCATTGAAAAGGTTTACACCGGGCAGGCAGGAAAAGAAGTGCTG  600

seq1  CAGATTTGAGAAGGAAACTGTAAAAGACACATGTGGCTGGCCTCAGCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTGAGAAGGAAACTGTAAAAGACACATGTGGCTGGCCTCAGCACA  650

seq1  GTGGGGCTCAACAAGGGGACCTCTTGAAAGCCACAGCAGCAGTAGGCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCTCAACAAGGGGACCTCTTGAAAGCCACAGCAGCAGTAGGCATT  700

seq1  TAGACACAGGCTTACTCTAAATAGGCTATTGCATTGGGGCATCTTCCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACAGGCTTACTCTAAATAGGCTATTGCATTGGGGCATCTTCCAGG  750

seq1  TGATCCATTAGTGTAGGAATCACAGGATGCTAGAACCTGGCTTTCTGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCATTAGTGTAGGAATCACAGGATGCTAGAACCTGGCTTTCTGGAG  800

seq1  AGCTTCAACACGAAGCTTATTTATCTCGGTCCATCTTTGTTACATTTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCAACACGAAGCTTATTTATCTCGGTCCATCTTTGTTACATTTTCC  850

seq1  TTCTGGAATGCTTTTTATTGACTTTTGTTACTTAACTTGATTTCTGTTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAATGCTTTTTATTGACTTTTGTTACTTAACTTGATTTCTGTTGC  900

seq1  TCCTGTCGGCATCATTTTTAATGAGAAGTCAAACTTTAGCCAAAAAGCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCGGCATCATTTTTAATGAGAAGTCAAACTTTAGCCAAAAAGCTT  950

seq1  CTTGTGTGCTTATAACAGATTTGTTCATTTCTGTTAGCTTATCTTAATTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTGCTTATAACAGATTTGTTCATTTCTGTTAGCTTATCTTAATTT  1000

seq1  TATAGAGA-AATGGTTGATACCATGACATTTCAATACGTACACATGAT-A  1048
      |||| ||| ||||| ||||||||||||||||||||||||||||||||| |
seq2  TATA-AGAGAATGG-TGATACCATGACATTTCAATACGTACACATGATAA  1048

seq1  GACTTTGATCATTTTCACCTTGTCTACTGA-TTTTTCTTATAACCCA-CA  1096
      ||||||||||| |||||||||||||||||| |||||||||  ||||| ||
seq2  GACTTTGATCA-TTTCACCTTGTCTACTGATTTTTTCTTAATACCCACCA  1097

seq1  TCTCTTTCTGCTCTTCCTATATATCTGATTCAT-CTTTCACTTTCATGCC  1145
      |||| |||||||||    |||||||||| |||| ||||||||| |||| |
seq2  TCTC-TTCTGCTCT--GAATATATCTGA-TCATCCTTTCACTTCCATG-C  1142

seq1  CTCCATCCC  1154
      |||||||||
seq2  CTCCATCCC  1151