BAC Information

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BAC

Clone NameB6Ng01-344J06
Chromosome2 (Build37)
Map Location 9,659,114 - 9,790,670
singlet/doubletdoublet
Overlap geneGata3, LOC100040768
Upstream geneLOC100040710, LOC100040548, LOC100040566
Downstream gene4930412O13Rik, Taf3, Atp5c1, Kin, Itih2, Itih5, Sfmbt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344J06.bB6Ng01-344J06.g
ACCGA127028GA127029
length1,172313
definitionB6Ng01-344J06.b B6Ng01-344J06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,789,493 - 9,790,670)(9,659,114 - 9,659,426)
sequence
gaattcagattttcaggctagggggcaagtgctaggttgctgagggatct
cacagaccctccctcatcattctaagtgttacctcgttttcacacgcttt
ccttccctaagtgacttatctgtgaccttgtttccagaaggcagggagtg
tgtgaactgcggggcaacctctaccccactgtggcggcgagatggtaccg
ggcactacctttgcaatgcctgcggactctaccataaaatgaatgggcag
aaccggccccttatcaagcccaagcgaaggctggtaagttcttggaagta
ctgagctcatttatctgttttacgttttctgtgtcgtctctgagaagaat
ggctttctgcaggaaactggcctggtagttttctctcctttatttttctt
cccttcttttttactgtttctcctccaccttttatttcttttatctcttt
tccttttatactttttcaaattaaataaaaaaaaactttgtatttttatt
tttcatggttaaatcgcttctgaaatttaaggatactaacttactggtta
tcccatctgaaacatatatcctgatagagtagctaagcttagcaacatca
gaaccactgtgtcaataattgctgtgtcacaggggccagagatttaatgt
ggagaatgaagtatcccaggaaccatttagaacattctctggaagttgta
gaagtctctgaggaggccattccagacccagcgctgtagatgaaccgctg
atatccatgctttaagattaataggacttcaggttgtgatagtacactcc
tgtaatcccagaatttaggaggtggaaccacgagatcaggagttcaagga
cagcctcagccacatactgagtttgtagttagcccggggccatgggattg
atggtaacttaaccgaattttagaatcagtctctggtattgatctgcttc
ttggtcgacactttgaaactttatgtgatcccgtcttgactgtggtctca
tcacactcactctcatggcgtgagagtttcttgctctgctgcacacagct
cctcttcccgagccttcttgataactaggatcttgaagagaacttcacca
ttgagcatttagagaatccagaacgggaggtggttcagtttgttaaactt
gactctggacctcgggccagct

acatgagaacatgattactcaaacctgtaccctgtgtcttctttaaacca
ggtctgcctttaattgactagtatctggatcaaaggtatatatatcatcg
caccactcggtgggacacacagaaagaccattctgaataggtagctccaa
tggagagttaacctcatcaggacaatgtatcctatccactgtgtgtcagc
tgtgaggaaagaaggaagcaaggaaggaaggaaggaagcaaggaaggaag
gaaggaaggaggaaggtgtggtttttggttttagtttttgttttgttagt
tggttgttgttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_9789493_9790670
seq2: B6Ng01-344J06.b_44_1215 (reverse)

seq1  AGCTGGCCCGAGGTTCCAGAGTCAAGTTTA--CAACTGAA-CACCTCCTG  47
      ||||||||||||| ||||||||||||||||   ||||||| ||||||| |
seq2  AGCTGGCCCGAGG-TCCAGAGTCAAGTTTAACAAACTGAACCACCTCCCG  49

seq1  -TCT-GATTCCTTTCTAAATGCTCAATGGGTTGAGGTTCTCTCAAGGATT  95
       ||| |||||   ||||||||||||||||  ||| |||||||  | || |
seq2  TTCTGGATTC---TCTAAATGCTCAATGG--TGAAGTTCTCTTCAAGA-T  93

seq1  CCTAGTTATCAAG-AGGCTCGGGAAAGAGGAGCTGTGTGCAGCAGAGCAG  144
      ||||||||||||| ||||||||| ||||||||||||||||||||||||| 
seq2  CCTAGTTATCAAGAAGGCTCGGG-AAGAGGAGCTGTGTGCAGCAGAGCAA  142

seq1  GAAACTCTCACGCCATGGAGAGTGAGTGGTGATGAGACCACAAGTCAAGA  194
      |||||||||||||||| |||||||||| ||||||||||||| ||||||||
seq2  GAAACTCTCACGCCAT-GAGAGTGAGT-GTGATGAGACCAC-AGTCAAGA  189

seq1  CGGGAATCACATAAAGTTTTCAAAGTGTCGACCAAGAAGCAGATCAATAC  244
      |||| ||||||||||| |||||||||||||||||||||||||||||||||
seq2  CGGG-ATCACATAAAG-TTTCAAAGTGTCGACCAAGAAGCAGATCAATAC  237

seq1  CAGAGACTGATTCTAAAATTCGGTTAAGTTACCATCAATCCCATGGCCCC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACTGATTCTAAAATTCGGTTAAGTTACCATCAATCCCATGGCCCC  287

seq1  -GGCTAACTACAAACTCAGTATGTGGCTGAGGCTGTCCTTGAACTCCTGA  343
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAACTACAAACTCAGTATGTGGCTGAGGCTGTCCTTGAACTCCTGA  337

seq1  TCTCGTGGTTCCACCTCCTAAATTCTGGGATTACAGGAGTGTACTATCAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTGGTTCCACCTCCTAAATTCTGGGATTACAGGAGTGTACTATCAC  387

seq1  AACCTGAAGTCCTATTAATCTTAAAGCATGGATATCAGCGGTTCATCTAC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAAGTCCTATTAATCTTAAAGCATGGATATCAGCGGTTCATCTAC  437

seq1  AGCGCTGGGTCTGGAATGGCCTCCTCAGAGACTTCTACAACTTCCAGAGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTGGGTCTGGAATGGCCTCCTCAGAGACTTCTACAACTTCCAGAGA  487

seq1  ATGTTCTAAATGGTTCCTGGGATACTTCATTCTCCACATTAAATCTCTGG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTAAATGGTTCCTGGGATACTTCATTCTCCACATTAAATCTCTGG  537

seq1  CCCCTGTGACACAGCAATTATTGACACAGTGGTTCTGATGTTGCTAAGCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTGACACAGCAATTATTGACACAGTGGTTCTGATGTTGCTAAGCT  587

seq1  TAGCTACTCTATCAGGATATATGTTTCAGATGGGATAACCAGTAAGTTAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTACTCTATCAGGATATATGTTTCAGATGGGATAACCAGTAAGTTAG  637

seq1  TATCCTTAAATTTCAGAAGCGATTTAACCATGAAAAATAAAAATACAAAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTAAATTTCAGAAGCGATTTAACCATGAAAAATAAAAATACAAAG  687

seq1  TTTTTTTTTATTTAATTTGAAAAAGTATAAAAGGAAAAGAGATAAAAGAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTATTTAATTTGAAAAAGTATAAAAGGAAAAGAGATAAAAGAA  737

seq1  ATAAAAGGTGGAGGAGAAACAGTAAAAAAGAAGGGAAGAAAAATAAAGGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGTGGAGGAGAAACAGTAAAAAAGAAGGGAAGAAAAATAAAGGA  787

seq1  GAGAAAACTACCAGGCCAGTTTCCTGCAGAAAGCCATTCTTCTCAGAGAC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAACTACCAGGCCAGTTTCCTGCAGAAAGCCATTCTTCTCAGAGAC  837

seq1  GACACAGAAAACGTAAAACAGATAAATGAGCTCAGTACTTCCAAGAACTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGAAAACGTAAAACAGATAAATGAGCTCAGTACTTCCAAGAACTT  887

seq1  ACCAGCCTTCGCTTGGGCTTGATAAGGGGCCGGTTCTGCCCATTCATTTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCCTTCGCTTGGGCTTGATAAGGGGCCGGTTCTGCCCATTCATTTT  937

seq1  ATGGTAGAGTCCGCAGGCATTGCAAAGGTAGTGCCCGGTACCATCTCGCC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGAGTCCGCAGGCATTGCAAAGGTAGTGCCCGGTACCATCTCGCC  987

seq1  GCCACAGTGGGGTAGAGGTTGCCCCGCAGTTCACACACTCCCTGCCTTCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGTGGGGTAGAGGTTGCCCCGCAGTTCACACACTCCCTGCCTTCT  1037

seq1  GGAAACAAGGTCACAGATAAGTCACTTAGGGAAGGAAAGCGTGTGAAAAC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAAGGTCACAGATAAGTCACTTAGGGAAGGAAAGCGTGTGAAAAC  1087

seq1  GAGGTAACACTTAGAATGATGAGGGAGGGTCTGTGAGATCCCTCAGCAAC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAACACTTAGAATGATGAGGGAGGGTCTGTGAGATCCCTCAGCAAC  1137

seq1  CTAGCACTTGCCCCCTAGCCTGAAAATCTGAATTC  1178
      |||||||||||||||||||||||||||||||||||
seq2  CTAGCACTTGCCCCCTAGCCTGAAAATCTGAATTC  1172


seq1: chr2_9659114_9659426
seq2: B6Ng01-344J06.g_71_383

seq1  ACATGAGAACATGATTACTCAAACCTGTACCCTGTGTCTTCTTTAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGAACATGATTACTCAAACCTGTACCCTGTGTCTTCTTTAAACCA  50

seq1  GGTCTGCCTTTAATTGACTAGTATCTGGATCAAAGGTATATATATCATCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGCCTTTAATTGACTAGTATCTGGATCAAAGGTATATATATCATCG  100

seq1  CACCACTCGGTGGGACACACAGAAAGACCATTCTGAATAGGTAGCTCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTCGGTGGGACACACAGAAAGACCATTCTGAATAGGTAGCTCCAA  150

seq1  TGGAGAGTTAACCTCATCAGGACAATGTATCCTATCCACTGTGTGTCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGTTAACCTCATCAGGACAATGTATCCTATCCACTGTGTGTCAGC  200

seq1  TGTGAGGAAAGAAGGAAGCAAGGAAGGAAGGAAGGAAGCAAGGAAGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGAAAGAAGGAAGCAAGGAAGGAAGGAAGGAAGCAAGGAAGGAAG  250

seq1  GAAGGAAGGAGGAAGGTGTGGTTTTTGGTTTTAGTTTTTGTTTTGTTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGGAGGAAGGTGTGGTTTTTGGTTTTAGTTTTTGTTTTGTTAGT  300

seq1  TGGTTGTTGTTAT  313
      |||||||||||||
seq2  TGGTTGTTGTTAT  313


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