BAC Information

Click to search

BAC

Clone NameB6Ng01-344M05
Chromosome2 (Build37)3 (Build37)
Map Location 44,462,054 - 44,463,199131,430,557 - 131,430,692
singlet/doubletsingletsinglet
Overlap geneGtdc1
Upstream geneKynu, Arhgap15
Downstream geneZeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344M05.bB6Ng01-344M05.g
ACCGA127163GA127164
length1,141998
definitionB6Ng01-344M05.b B6Ng01-344M05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(44,462,054 - 44,463,199)(131,430,557 - 131,430,692)
sequence
gaattctgtgtcctcctctattactctctgcctcatggccttgagacaag
gttgtttaccgaactgcaaggtcatcattccagttaggcacactggtctg
tgagcacccagggtgtacctggctttgtaccaaaatgctggggttatagc
catgtgcaggtatacctaactttttatgtgggtactgaggtcttcacgct
tgcaaaacaagcattcttactcactgagccatcttcccagtccccaatta
tcttaaatgcacattttcatcagatttaaagtttgtagcccagaagaaag
ccatttaaagtcttagttctgataccgagtagcagcattccaggacaagc
tgaaacttaattttcttctctgcaacaatatgtctaaaatactcagtcca
aagcttcctgagggcaatcagggagatggtgtgtgaaggggaactgcagt
gtgcctggtaaacagtaaacacatttaataaggactgtctactgctttta
tcagcactaccatcttcatcaccttcttgtcagctgttagttagaaactg
gaaagttaaagatcttgtagttaagtttactaatcatcatactggagaaa
tcttgtttgttatatttttaattgattattaatactatgtatatataatg
ctacttataataaaacatggaagaagaactgataacatccatctaaagta
ccagcttgctctgtctgaaactaagagtcataactcttatgaaaataact
caaaatgtgattttcaatatgaaaatgcaaatatgacttaaagtaaaact
tgtgcttgtgtttaaggcatgagttcacacccaaatgctcttctccagac
tgtatgctaatcctgtcaaatggtagcacaagtgtaggcattcatgccac
tattagcccagctgccttcacatcagcttaccaatctctataatatctgt
aagtgaagctgagggagcagactgtcatgtcttcccttctcttcttcgga
gctatccagacagtaagcagactgaaaacaatgttacaaacaccatggga
agacaagcctgggaaactaccaagagctgactaggctccttacagatgag
atcacgtgagtacaggtggaatgagagcccaggtctctcca

gaattctttaactctgtacccattttttaatatttgtttctctggagtct
aacttcttgaattctttgtatatattggatattagtcctctttctggtgt
agcattggtaaagatcttttcccaatctgttggttgcagttttgtcctat
tgacggtgttctttgcctttcagaagctctgcaatattatgaggtcccat
ttgtcaattcttgatcttaaagcataagctatttgtattctgtccaggaa
attttcctctgtgcccatgtgttcaaggctcttccccattttcttttctg
ttagtttcagtgtgtctggttttatgtggagaaagaaattgaagaagatc
tcagaagatggaaagatcacccatattcatggactctggcaggattaatg
tagtaaaatggccattgtgccaaaagcaatctacagattcagtgcaatcc
tcatcaaaattccaactcaattcttcatagagttagaaagggcaatttcc
aaatacatctggaataacaaaaaacccaagattgcataaactattctcaa
caataaaagaacttttggggaaatcaccattattgttgttttaaaataca
caacaatattgtgttaaaccttttaacagtacatagtaaacattcaatat
acatattttaatatttatttggttggttagtttttgactttttgcaacag
tctatgtagccttagattgcttagagctccctttgtagcctaggctacac
aaagtcttgcatgctttctggctgcctgttgctaggattataattatgtg
ccaccatatttgctctacaatttaatattattcagaccactcttctaaag
tccctcattagaatgacagcatgtgtatatatacacatgtgtctgttgaa
gtcaggagttcagtgtgtagagtctacactacctgccagagatggtcatg
gtactatgaaagcaaaaatacgaaataatcttttgagaagttcaatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_44462054_44463199
seq2: B6Ng01-344M05.b_49_1189

seq1  GAATTCTGTGTCCTCCTCTATTACTCTCTGCCTCATGGCCTTGAGACAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTCCTCCTCTATTACTCTCTGCCTCATGGCCTTGAGACAAG  50

seq1  GTTGTTTACCGAACTGCAAGGTCATCATTCCAGTTAGGCACACTGGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTACCGAACTGCAAGGTCATCATTCCAGTTAGGCACACTGGTCTG  100

seq1  TGAGCACCCAGGGTGTACCTGGCTTTGTACCAAAATGCTGGGGTTATAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACCCAGGGTGTACCTGGCTTTGTACCAAAATGCTGGGGTTATAGC  150

seq1  CATGTGCAGGTATACCTAACTTTTTATGTGGGTACTGAGGTCTTCACGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCAGGTATACCTAACTTTTTATGTGGGTACTGAGGTCTTCACGCT  200

seq1  TGCAAAACAAGCATTCTTACTCACTGAGCCATCTTCCCAGTCCCCAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAACAAGCATTCTTACTCACTGAGCCATCTTCCCAGTCCCCAATTA  250

seq1  TCTTAAATGCACATTTTCATCAGATTTAAAGTTTGTAGCCCAGAAGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAATGCACATTTTCATCAGATTTAAAGTTTGTAGCCCAGAAGAAAG  300

seq1  CCATTTAAAGTCTTAGTTCTGATACCGAGTAGCAGCATTCCAGGACAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAAAGTCTTAGTTCTGATACCGAGTAGCAGCATTCCAGGACAAGC  350

seq1  TGAAACTTAATTTTCTTCTCTGCAACAATATGTCTAAAATACTCAGTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTAATTTTCTTCTCTGCAACAATATGTCTAAAATACTCAGTCCA  400

seq1  AAGCTTCCTGAGGGCAATCAGGGAGATGGTGTGTGAAGGGGAACTGCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCCTGAGGGCAATCAGGGAGATGGTGTGTGAAGGGGAACTGCAGT  450

seq1  GTGCCTGGTAAACAGTAAACACATTTAATAAGGACTGTCTACTGCTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGGTAAACAGTAAACACATTTAATAAGGACTGTCTACTGCTTTTA  500

seq1  TCAGCACTACCATCTTCATCACCTTCTTGTCAGCTGTTAGTTAGAAACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACTACCATCTTCATCACCTTCTTGTCAGCTGTTAGTTAGAAACTG  550

seq1  GAAAGTTAAAGATCTTGTAGTTAAGTTTACTAATCATCATACTGGAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTAAAGATCTTGTAGTTAAGTTTACTAATCATCATACTGGAGAAA  600

seq1  TCTTGTTTGTTATATTTTTAATTGATTATTAATACTATGTATATATAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTGTTATATTTTTAATTGATTATTAATACTATGTATATATAATG  650

seq1  CTACTTATAATAAAACATGGAAGAAGAACTGATAACATCCATCTAAAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTATAATAAAACATGGAAGAAGAACTGATAACATCCATCTAAAGTA  700

seq1  CCAGCTTGCTCTGTCTGAAACTAAGAGTCATAACTCTTATGAAAATAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTGCTCTGTCTGAAACTAAGAGTCATAACTCTTATGAAAATAACT  750

seq1  CAAAATGTGATTTTCAATATGAAAATGCAAATATGACTTAAAGTAAAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGTGATTTTCAATATGAAAATGCAAATATGACTTAAAGTAAAACT  800

seq1  TGTGCTTGTGTTTAAGGCATGAGTTCACACCCAAATGCTCTTCTCCAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTGTGTTTAAGGCATGAGTTCACACCCAAATGCTCTTCTCCAGAC  850

seq1  TGTATGCTAATCCTGTCAAATGGTAGCACAAGTGTAGGCATTCATGCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCTAATCCTGTCAAATGGTAGCACAAGTGTAGGCATTCATGCCAC  900

seq1  TATTAGCCCAGCTGCCTTCACATCAGCTTACCAATCTCTATAATATCTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCCCAGCTGCCTTCACATCAGCTTACCAATCTCTATAATATCTGT  950

seq1  AAGTGAAGCTGAGGGAGCAGACTGTCATGTCTTCCCTTCTCTTCTTCGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAGCTGAGGGAGCAGACTGTCATGTCTTCCCTTCTCTTCTTCGGA  1000

seq1  GCTATCCAAGACAGTAAGCAGAACTGAAAACAATG-TACAAACACCATGG  1049
      ||||||| ||||||||||||| ||||||||||||| ||||||||||||||
seq2  GCTATCC-AGACAGTAAGCAG-ACTGAAAACAATGTTACAAACACCATGG  1048

seq1  GAAGACACAAGCCTGGGAAACTACACAAGAGCTGACTAGGCTCCTTACAG  1099
      ||||  |||||||||||||||||| |||||||||||||||||||||||||
seq2  GAAG--ACAAGCCTGGGAAACTAC-CAAGAGCTGACTAGGCTCCTTACAG  1095

seq1  ATGAGATCACGTGAGTACAGGTGAGAATGAGAGCCCAGGTCTCTCCA  1146
      ||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATGAGATCACGTGAGTACAGGTG-GAATGAGAGCCCAGGTCTCTCCA  1141


seq1: chr3_131430557_131430692
seq2: B6Ng01-344M05.g_105_624 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  TTCTTTTATTGTTGAGAATAGTTTATGCAATCTTGGGTTTTTTGTTATTC  50

seq1  --------------------------------------------------  0
                                                        
seq2  CAGATGTATTTGGAAATTGCCCTTTCTAACTCTATGAAGAATTGAGTTGG  100

seq1  --------------------------------------------------  0
                                                        
seq2  AATTTTGATGAGGATTGCACTGAATCTGTAGATTGCTTTTGGCACAATGG  150

seq1  --------------------------------------------------  0
                                                        
seq2  CCATTTTACTACATTAATCCTGCCAGAGTCCATGAATATGGGTGATCTTT  200

seq1  --------------------------------------------------  0
                                                        
seq2  CCATCTTCTGAGATCTTCTTCAATTTCTTTCTCCACATAAAACCAGACAC  250

seq1  --------------------------------------------------  0
                                                        
seq2  ACTGAAACTAACAGAAAAGAAAATGGGGAAGAGCCTTGAACACATGGGCA  300

seq1  --------------------------------------------------  0
                                                        
seq2  CAGAGGAAAATTTCCTGGACAGAATACAAATAGCTTATGCTTTAAGATCA  350

seq1  ------------------------------------TTCTTTTATTGTTG  14
                                          ||| |  |  |   
seq2  AGAATTGACAAATGGGACCTCATAATATTGCAGAGCTTC-TGAAAGGCAA  399

seq1  AGAATAGTTTTGCTATCCCAAAATAGCAAACCAACAGATTAGGAAAAGAT  64
      |||| |   |   ||   |||||  || |||||||||||| |||||||||
seq2  AGAACACCGTCAATAGGACAAAACTGC-AACCAACAGATTGGGAAAAGAT  448

seq1  CTTTACCAATCCTACATCTGATAGAGGGCGAATATCCAATATATACAAAG  114
      |||||||||| ||||| | || ||||| | ||||||||||||||||||||
seq2  CTTTACCAATGCTACACCAGAAAGAGGACTAATATCCAATATATACAAAG  498

seq1  AACTCAAGAAGGTAGACTCCAG  136
      || |||||||| ||||||||||
seq2  AATTCAAGAAGTTAGACTCCAG  520


| Home | SequenceCutter | Blast | Download |