BAC Information

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BAC

Clone NameB6Ng01-345J06
Chromosome2 (Build37)
Map Location 68,569,995 - 68,571,125
singlet/doubletsinglet
Overlap gene4932414N04Rik
Upstream geneLOC227995, B3galt1, Stk39, LOC100039683, Gm1323, 4933409G03Rik
Downstream geneLOC667443, Lass6, Nostrin, Spc25, G6pc2, Abcb11, Dhrs9, Lrp2, Bbs5, Kbtbd10, Fastkd1, Ppig
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345J06.bB6Ng01-345J06.g
ACCGA127728GA127729
length1,1341,121
definitionB6Ng01-345J06.b B6Ng01-345J06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagt
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaaacttgtacaaccactctggaaatcagtctggcaattcctca
gaaaattggacatagtactacaggaggatcccgaaatacctctcctgggc
atatatccagaagatatcccaaccggtaagaagggcacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacaaaaatgtggtacatttacacaatgg
agtactactcagctattaaaaagaatgaatttatgaaattcctaggcaaa
tggatggacctggagggcatcatcctgagtgaggtaacacaatcacaaat
gatatgtacacactgataagtggatattagcccagaaacctagtataccc
gagatataagatacaatttgcaaaacacatgaaactgaagaagaacgaag
accaaagtatgaacactttgccccttcttagaaatcgaaataatcaccca
tggaaaggagttacagagacaaagtttggagctgagaacaaaaggatgga
ccatctagaaactgccatatctggggatccacccccataatcagcttcca
aacgctgaacacccactgcataacactagcaagaattttgctgaaaggac
ccagaatatatagcttgttcttctttggtgagaactaggcaggggcttac
aacataataagtgatgctccacagtcagctattgatggatcaccagcgtt
cccaatggaggactaagagaagtacccagagctaagagttctgcaaccct
gcagtgcaacacactatgaacctacagtaccggactttgatcttcagctc
caaatggatacaaagatgctatcggccacacctgaagagagtcaatgaac
tgactttattgcctgatacaggatctcagtgcta
gaattcaggtaagaaaatgcaaatacaaaatggattcttattttgctttt
catacacgcacagggtaaagaatgaatgcttaaacagctatgaaatgcta
aagtcttacagagttttctcttcagctgattccagacatttctccttttt
ttgatgcagctcagattgtggagacagaatcgacttggtgagtgctttat
tgaaatcttcattgtcatccgcaggctttgaaaaggtgggaagttagctt
ttaaaaatacagaacttgctctgtctgggacctcacctctttctcacagg
tttaggaatctaggcgaattctctaaatgttgtaaatcatggtaaatgat
tctctaaatgttgggaatcaagcacacaaatgcaagcagagggctttccc
taaaacaattcagattagttgacattttcattcttttatactgctgaaat
ttatacaacaaaacacatctctttttaatttgtgcttgttaataatggtt
tttctggttgtggctgcatttcatgctagtcctagaaacattccactttt
aggcaatgcctgctcctgactgtgttttatgtgcatgcattcacacagga
gtgtgccttttcaacacttcagaaactctaaacacagccagggttatggc
tctgcagataagagtgtgtttggccaagactgcccaacctagtcttactc
cctagggaacacttttgaaagagataaggggcttccccaagttgtcctct
gtcatcaacatgcttgctgcccgctgccccgcaaaaccctaaataattaa
aaatgaaaaatttaaaatcttttaaaaactaaacaattcactagtttgca
catcagtagctcagactatattacccagagaggggaaaatatttaataat
acaactaaccgcatccaggtgggctatatggactgatttgcgggctgtgg
cctgaagtgagtcagcatgttctcttggtaagaggcttttcgatcgtccc
ttgcaggacactcagagcaaacacagagctcagccaggtttagtatgcat
gttgtgcctgagtcagccatgccaaactgggacattgaacttcttcatct
tccgattcagtcgtagagtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_68569995_68571125
seq2: B6Ng01-345J06.g_64_1184 (reverse)

seq1  TCACTCTTTACAGGACTGAATC-GAAGATGAAGGAGGTC-ATGTCCCAGT  48
      |||||||    | ||||||||| |||||||||| || || ||||||||||
seq2  TCACTCT----ACGACTGAATCGGAAGATGAAGAAGTTCAATGTCCCAGT  46

seq1  TTGCCAT-GCTGACTCA-GCACAACACTGCATTACTAAA-CTTGCTGAGC  95
      ||| ||| ||||||||| |||||||| |||| ||||||| || |||||||
seq2  TTGGCATGGCTGACTCAGGCACAACA-TGCA-TACTAAACCTGGCTGAGC  94

seq1  TCTGTGTTTGCCTCTGAGTGTCCCTGCAAGGGACGATCGAAAAGCCTCTT  145
      |||||||||| |||||||||| ||||||||||||||||||||||||||||
seq2  TCTGTGTTTG-CTCTGAGTGT-CCTGCAAGGGACGATCGAAAAGCCTCTT  142

seq1  TACCCAAGAGAACATGCTGACTTCCACTTCAGGCCCACAGCCCGCAAATC  195
         |||||||||||||||||||  ||||||||| ||||||||||||||||
seq2  --ACCAAGAGAACATGCTGACT--CACTTCAGG-CCACAGCCCGCAAATC  187

seq1  AGTCCATAATAGCCCACCTGGATGCGGTTAGTTGTATTATTAAATATTTT  245
      ||||||| |||||||||||||||||||||||||||||||||||||| |||
seq2  AGTCCAT-ATAGCCCACCTGGATGCGGTTAGTTGTATTATTAAATA-TTT  235

seq1  TCCCCTCTCTGGGTAATATAGTCTGAGCTACTGATGTGCAAACTAGTGAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCTCTGGGTAATATAGTCTGAGCTACTGATGTGCAAACTAGTGAA  285

seq1  TTGTTTAGTTTTTAAAAGATTTTAAATTTTTCATTTTTAATTATTTAGGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAGTTTTTAAAAGATTTTAAATTTTTCATTTTTAATTATTTAGGG  335

seq1  TTTTGCGGGGCAGCGGGCAGCAAGCATGTTGATGACAGAGGACAACTTGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCGGGGCAGCGGGCAGCAAGCATGTTGATGACAGAGGACAACTTGG  385

seq1  GGAAGCCCCTTATCTCTTTCAAAAGTGTTCCCTAGGGAGTAAGACTAGGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCCCTTATCTCTTTCAAAAGTGTTCCCTAGGGAGTAAGACTAGGT  435

seq1  TGGGCAGTCTTGGCCAAACACACTCTTATCTGCAGAGCCATAACCCTGGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGTCTTGGCCAAACACACTCTTATCTGCAGAGCCATAACCCTGGC  485

seq1  TGTGTTTAGAGTTTCTGAAGTGTTGAAAAGGCACACTCCTGTGTGAATGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTAGAGTTTCTGAAGTGTTGAAAAGGCACACTCCTGTGTGAATGC  535

seq1  ATGCACATAAAACACAGTCAGGAGCAGGCATTGCCTAAAAGTGGAATGTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACATAAAACACAGTCAGGAGCAGGCATTGCCTAAAAGTGGAATGTT  585

seq1  TCTAGGACTAGCATGAAATGCAGCCACAACCAGAAAAACCATTATTAACA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGACTAGCATGAAATGCAGCCACAACCAGAAAAACCATTATTAACA  635

seq1  AGCACAAATTAAAAAGAGATGTGTTTTGTTGTATAAATTTCAGCAGTATA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAATTAAAAAGAGATGTGTTTTGTTGTATAAATTTCAGCAGTATA  685

seq1  AAAGAATGAAAATGTCAACTAATCTGAATTGTTTTAGGGAAAGCCCTCTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGAAAATGTCAACTAATCTGAATTGTTTTAGGGAAAGCCCTCTG  735

seq1  CTTGCATTTGTGTGCTTGATTCCCAACATTTAGAGAATCATTTACCATGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATTTGTGTGCTTGATTCCCAACATTTAGAGAATCATTTACCATGA  785

seq1  TTTACAACATTTAGAGAATTCGCCTAGATTCCTAAACCTGTGAGAAAGAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAACATTTAGAGAATTCGCCTAGATTCCTAAACCTGTGAGAAAGAG  835

seq1  GTGAGGTCCCAGACAGAGCAAGTTCTGTATTTTTAAAAGCTAACTTCCCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTCCCAGACAGAGCAAGTTCTGTATTTTTAAAAGCTAACTTCCCA  885

seq1  CCTTTTCAAAGCCTGCGGATGACAATGAAGATTTCAATAAAGCACTCACC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCAAAGCCTGCGGATGACAATGAAGATTTCAATAAAGCACTCACC  935

seq1  AAGTCGATTCTGTCTCCACAATCTGAGCTGCATCAAAAAAAGGAGAAATG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCGATTCTGTCTCCACAATCTGAGCTGCATCAAAAAAAGGAGAAATG  985

seq1  TCTGGAATCAGCTGAAGAGAAAACTCTGTAAGACTTTAGCATTTCATAGC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAATCAGCTGAAGAGAAAACTCTGTAAGACTTTAGCATTTCATAGC  1035

seq1  TGTTTAAGCATTCATTCTTTACCCTGTGCGTGTATGAAAAGCAAAATAAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAGCATTCATTCTTTACCCTGTGCGTGTATGAAAAGCAAAATAAG  1085

seq1  AATCCATTTTGTATTTGCATTTTCTTACCTGAATTC  1131
      ||||||||||||||||||||||||||||||||||||
seq2  AATCCATTTTGTATTTGCATTTTCTTACCTGAATTC  1121