BAC Information

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BAC

Clone NameB6Ng01-345J10
Chromosome2 (Build37)
Map Location 130,438,488 - 130,439,596
singlet/doubletsinglet
Overlap geneUbox5, Fastkd5
Upstream geneSirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik
Downstream geneProsapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463, Smox, Adra1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345J10.bB6Ng01-345J10.g
ACCGA127736GA127737
length1,1611,112
definitionB6Ng01-345J10.b B6Ng01-345J10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaactacgagcctatggaagccattctgaaaccacagagctcct
ttctctgacctccataggcttttttttttttaatgtaaaaatgcattcag
cacaactctaaaagtcctcatagtctttcagtctcaatactgcttaaagg
ttcaaagtttaagtctcttctgagattcaaagcaatctcttttttaaaaa
aatatttatttattttatttttattttatgtacattggtgtctgtgtgag
ggtgtccaatttcctggaacaggagttagagacagttgtgagctgctgtg
tgggtgctgggaattgaacccagtgctctagaagagcggccagtactctt
aaccactgagcaatctctccagcccctcaaagcaatctcctagttgtaag
ctcctataaaatcaaaagaaagttacatacatccaacatacactggcaca
gaacatacacttcagagggaggaatccggggtatactgaggaaatacttg
accaaagcaaaaccaaaccccagcagagcaaactccaaatcctgtgtacc
gtgtctgaggtcaaaggactatgccttccagttttgctgtctgtaacacc
tggtgatagtaggtgtgtgcaagtgggcctgcaaggtgggtgggctaagg
tggctagacataactgacatgtctttggtcttcctacagatggcactatt
accccagagaccagctacatcatcctgacagctgccatccccagattctg
ttcctggctggtgagtattatgtactgggtcacagtggacctaaccagaa
aatcccggggcaggcctttaaggaagaacctccttatggagtccctggag
ggctgttagattgtgatctagcttttatttagggaagagaatccaagtat
agtcttagaaagcttgagaaaaaggaagctaagttatttgtgaagtcatg
caagagacattaacaccccacgttggagatgagacactgtagcctaggct
gatgtgtgccaggggactgtttccagtgcttcatcagctctggctgtcag
ggctcagagaccttgagacggtggaatcttctgtgctccgatgatgcctg
ctgttttctagattcttctaacgttgaaaactcgttccgtgggatgagcc
ttaggctctga
gaattcttgccagagctggttaggtaagagaaataaagaaagccaaaatt
gaagggagacatagaactctatgtacagacacatgagcttatatacagaa
aatcctaaagaatccacatcacaactaaaatctttatggattcagagatg
aattaaatacaatgacaggttctgacagatcatgatcaaaaaccaaagga
gtggtttgagttggtatgatcagaaaaagtccaccacagaagtgaccttt
aaagagaacaaaatgatgatgaaaggtaattccttttaaaataaattctc
acaagcaccaagtatttaccaatgatttatgttaattacatgcatataat
ctccttatgtggttggctctcacacaaccaaactctaatcaggaaaatca
caaactcactggacttcacaacctaagatttaacacatttccttcagcta
agcttcttgtcacatttgggaagcagtgacccaaccagcactttaaaaca
gtgtgtgtgaaagagtgcaggtcctacagaggccagaagatggcactgga
tcctctggagcgggagttccacggggataccgagaactgaactgatattc
tggaagagcaatacaagctgagttgtctctccagccctccaacaaaggtg
cttagtgattctataccatgtctaaagctgttttgtttgttttggttttt
aattcattaattaactttggcttttttattgatttatttaaaaattgttt
tttggaacagggctttactatgtagccctaactaggcttgaattcactat
ctagatcaagctggcctccttctgatagagatccacctattaacctcctg
agtgctgcgattgaaggcttgtaccacaacactgggctatatttctttct
gggtctagttttatgatgctgctgacggtaagctcagtggtttaagagtg
cttacttctctcgcagaaaacccaagtttagttcccagcacaacacataa
tagttattttaaaaaccacctcctcaaaataatgtaacaagggctaagac
tacagaacagaaaaaaaaaatgcagttaagactttgtggatcatgtcatt
tttggaagatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_130438488_130439596
seq2: B6Ng01-345J10.g_65_1176

seq1  GAATTCTTGCCAGAGCTGGTTAGGTAAGAGAAATAAAGAAAGCCAAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCCAGAGCTGGTTAGGTAAGAGAAATAAAGAAAGCCAAAATT  50

seq1  GAAGGGAGACATAGAACTCTATGTACAGACACATGAGCTTATATACAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAGACATAGAACTCTATGTACAGACACATGAGCTTATATACAGAA  100

seq1  AATCCTAAAGAATCCACATCACAACTAAAATCTTTATGGATTCAGAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTAAAGAATCCACATCACAACTAAAATCTTTATGGATTCAGAGATG  150

seq1  AATTAAATACAATGACAGGTTCTGACAGATCATGATCAAAAACCAAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATACAATGACAGGTTCTGACAGATCATGATCAAAAACCAAAGGA  200

seq1  GTGGTTTGAGTTGGTATGATCAGAAAAAGTCCACCACAGAAGTGACCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTGAGTTGGTATGATCAGAAAAAGTCCACCACAGAAGTGACCTTT  250

seq1  AAAGAGAACAAAATGATGATGAAAGGTAATTCCTTTTAAAATAAATTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAACAAAATGATGATGAAAGGTAATTCCTTTTAAAATAAATTCTC  300

seq1  ACAAGCACCAAGTATTTACCAATGATTTATGTTAATTACATGCATATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCACCAAGTATTTACCAATGATTTATGTTAATTACATGCATATAAT  350

seq1  CTCCTTATGTGGTTGGCTCTCACACAACCAAACTCTAATCAGGAAAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTATGTGGTTGGCTCTCACACAACCAAACTCTAATCAGGAAAATCA  400

seq1  CAAACTCACTGGACTTCACAACCTAAGATTTAACACATTTCCTTCAGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCACTGGACTTCACAACCTAAGATTTAACACATTTCCTTCAGCTA  450

seq1  AGCTTCTTGTCACATTTGGGAAGCAGTGACCCAACCAGCACTTTAAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTTGTCACATTTGGGAAGCAGTGACCCAACCAGCACTTTAAAACA  500

seq1  GTGTGTGTGAAAGAGTGCAGGTCCTACAGAGGCCAGAAGATGGCACTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGAAAGAGTGCAGGTCCTACAGAGGCCAGAAGATGGCACTGGA  550

seq1  TCCTCTGGAGCGGGAGTTCCACGGGGATACCGAGAACTGAACTGATATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGGAGCGGGAGTTCCACGGGGATACCGAGAACTGAACTGATATTC  600

seq1  TGGAAGAGCAATACAAGCTGAGTTGTCTCTCCAGCCCTCCAACAAAGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAGCAATACAAGCTGAGTTGTCTCTCCAGCCCTCCAACAAAGGTG  650

seq1  CTTAGTGATTCTATACCATGTCTAAAGCTGTTTTGTTTGTTTTGGTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGATTCTATACCATGTCTAAAGCTGTTTTGTTTGTTTTGGTTTTT  700

seq1  AATTCATTAATTAACTTTGGCTTTTTTATTGATTTATTTAAAAATTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTAATTAACTTTGGCTTTTTTATTGATTTATTTAAAAATTGTTT  750

seq1  TTTGGAACAGGGCTTTACTATGTAGCCCTAACTAGGCTTGAATTCACTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAACAGGGCTTTACTATGTAGCCCTAACTAGGCTTGAATTCACTAT  800

seq1  CTAGATCAAGCTGGCCTCCTTCTGATAGAGATCCACCTATTAACCTCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATCAAGCTGGCCTCCTTCTGATAGAGATCCACCTATTAACCTCCTG  850

seq1  AGTGCTGCGATTGAAGGCTTGTACCACAACACTGGGCTATATT--CTTCT  898
      |||||||||||||||||||||||||||||||||||||||||||   ||||
seq2  AGTGCTGCGATTGAAGGCTTGTACCACAACACTGGGCTATATTTCTTTCT  900

seq1  GGGTCTAGTTTTATGATGCTGCTGACGGTAAGCTCAGTGG-TTAAGAGTG  947
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGGTCTAGTTTTATGATGCTGCTGACGGTAAGCTCAGTGGTTTAAGAGTG  950

seq1  CTTACTTCTCTCGCAGAAAACCCAAGTTTAGTTCCCAGCAC-ACACATAA  996
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTTACTTCTCTCGCAGAAAACCCAAGTTTAGTTCCCAGCACAACACATAA  1000

seq1  TAGTTATTTTTTAAAAACCACCTCCTCAAAATAATTGTAACAA-GGCTAA  1045
      ||||||  |||||||||||||||||||||||||| |||||||| ||||||
seq2  TAGTTA--TTTTAAAAACCACCTCCTCAAAATAA-TGTAACAAGGGCTAA  1047

seq1  GACTAACAGAAACAG-AAAAAAAAATGCAG-TAAGACTTTGTGGATCAAT  1093
      |||| |||| ||||| |||||||||||||| |||||||||||||||| ||
seq2  GACT-ACAG-AACAGAAAAAAAAAATGCAGTTAAGACTTTGTGGATC-AT  1094

seq1  GTCATTTT--GAAGATGC  1109
      ||||||||  ||||||||
seq2  GTCATTTTTGGAAGATGC  1112