BAC Information

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BAC

Clone NameB6Ng01-345L16
Chromosome2 (Build37)
Map Location 59,003,283 - 59,004,411
singlet/doubletsinglet
Overlap genePkp4
Upstream genePscdbp, LOC100042926, Acvr1c, LOC667062, Acvr1, LOC674940, Upp2, BC062650
Downstream geneLOC625354, 2310032F03Rik, LOC100038999, LOC100039016, Tanc1, Wdsub1, Baz2b, LOC667103, LOC667106, Ldha-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345L16.bB6Ng01-345L16.g
ACCGA127831GA127832
length5011,118
definitionB6Ng01-345L16.b B6Ng01-345L16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
attataaattcataatttgtcattacaagttataaattagcatgacataa
tcatatctcacaaaatgttttgtctttaagattatgaaggccccatatta
tttttgcgccattttaattcttgagggaagggtgttcactcaggcccaga
tctggggctttgagttggcccactccaacatctactctatctatgaactg
ctggctttggtgaaggggcgggtcctacagattcaaggctgcaggatctc
catgacacagggcaaacaatagtatatccaagaggagtcctggtgaggat
tcggtatggatggagtaggtatggatggagtagcagaagccagaggcctg
gaatcagaccaatgactcagtgcaatgaacatttgcaagtaaaaagtgtg
ggcaaaagggagtatcctgtgggactcatggtgacacactacagcttcca
cagcaagatttttttgttttgttttttctttggagaggaggtggggggag
g
gaattcacacagccacagggaatgatttccacagttagggtcttagggtt
tggattctgttgctgcaacaaaacgccatgactaaaaagcatgtagaaga
ggaaagggtttattcagctcatactttcacattgctgttcatcatggaag
gaagtcaggacaggaactcaaaaccagggcaggaacctggaggcaggagc
tgatgcagaggccatggagagtgttgcttactggcttattacccttgtag
ttcttagtctcctttcttatagaaccaagcccagcagcccaggggtaaaa
ctacccacaatgggctgctccctcacccaccacccccatcaaccactaat
ttaaaaaaatgccttatagctggagtttttggagggattttctcaattga
gagtccctcctttcagataactctagtttgtgtgttggcataagactagc
cagtacagttagcctcttgtattacatgtgaattcagtgtgattgctaac
tgtcatagatagtgaccccttttcccctaatctgaactccctgtgaccct
atgccaccaacactatcctgtttgtctggttggaggaggagaagcccatt
agagtatagatgtggtgcctagagtctgggcagaacttagtgtcggtgcg
tattttgtcataatatgctgttgtgtaaaaatgtgactcgtagctgggca
gtggtggcatatgcctttaatcccagcacttgggaggcagaggcaggcag
atttctgagttcaaggccagcctggtctacagagtgagttccaggacagt
caaggcttcacagagaaaccctgtctcaaaaagcaacaaacaaacaaaaa
acaaaaacaaaaacaaaacccaaaacaaaacaaaaaacaaaagaaaaaaa
aagtgtgactagtggaattagggctgttcaaatacagtggtggcttttgg
tcctagtctggaacttggatgcaatttttcttagaaactcacatcactta
acaaacttgaaacactagatagatggacctgacatctgacattttggtgt
ccttccttatatctcaatacttgagagatgtagacctgggcagccaggag
gactgagtcacttatcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_59003283_59004411
seq2: B6Ng01-345L16.g_65_1182

seq1  GAATTCACACAGCCACAGGGAATGATTTCCACAGTTAGGGTCTTAGGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACAGCCACAGGGAATGATTTCCACAGTTAGGGTCTTAGGGTT  50

seq1  TGGATTCTGTTGCTGCAACAAAACGCCATGACTAAAAAGCATGTAGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCTGTTGCTGCAACAAAACGCCATGACTAAAAAGCATGTAGAAGA  100

seq1  GGAAAGGGTTTATTCAGCTCATACTTTCACATTGCTGTTCATCATGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGGTTTATTCAGCTCATACTTTCACATTGCTGTTCATCATGGAAG  150

seq1  GAAGTCAGGACAGGAACTCAAAACCAGGGCAGGAACCTGGAGGCAGGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAGGACAGGAACTCAAAACCAGGGCAGGAACCTGGAGGCAGGAGC  200

seq1  TGATGCAGAGGCCATGGAGAGTGTTGCTTACTGGCTTATTACCCTTGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCAGAGGCCATGGAGAGTGTTGCTTACTGGCTTATTACCCTTGTAG  250

seq1  TTCTTAGTCTCCTTTCTTATAGAACCAAGCCCAGCAGCCCAGGGGTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGTCTCCTTTCTTATAGAACCAAGCCCAGCAGCCCAGGGGTAAAA  300

seq1  CTACCCACAATGGGCTGCTCCCTCACCCACCACCCCCATCAACCACTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCACAATGGGCTGCTCCCTCACCCACCACCCCCATCAACCACTAAT  350

seq1  TTAAAAAAATGCCTTATAGCTGGAGTTTTTGGAGGGATTTTCTCAATTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAATGCCTTATAGCTGGAGTTTTTGGAGGGATTTTCTCAATTGA  400

seq1  GAGTCCCTCCTTTCAGATAACTCTAGTTTGTGTGTTGGCATAAGACTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCTCCTTTCAGATAACTCTAGTTTGTGTGTTGGCATAAGACTAGC  450

seq1  CAGTACAGTTAGCCTCTTGTATTACATGTGAATTCAGTGTGATTGCTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAGTTAGCCTCTTGTATTACATGTGAATTCAGTGTGATTGCTAAC  500

seq1  TGTCATAGATAGTGACCCCTTTTCCCCTAATCTGAACTCCCTGTGACCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATAGATAGTGACCCCTTTTCCCCTAATCTGAACTCCCTGTGACCCT  550

seq1  ATGCCACCAACACTATCCTGTTTGTCTGGTTGGAGGAGGAGAAGCCCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACCAACACTATCCTGTTTGTCTGGTTGGAGGAGGAGAAGCCCATT  600

seq1  AGAGTATAGATGTGGTGCCTAGAGTCTGGGCAGAACTTAGTGTCGGTGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATAGATGTGGTGCCTAGAGTCTGGGCAGAACTTAGTGTCGGTGCG  650

seq1  TATTTTGTCATAATATGCTGTTGTGTAAAAATGTGACTCGTAGCTGGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTCATAATATGCTGTTGTGTAAAAATGTGACTCGTAGCTGGGCA  700

seq1  GTGGTGGCATATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGCATATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAG  750

seq1  ATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGT  800

seq1  CAAGGCTTCACAGAGAAACCCTGTCTCAAAAAGCAAACAAACAAACAAAA  850
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAAGGCTTCACAGAGAAACCCTGTCTCAAAAAGC-AACAAACAAACAAAA  849

seq1  AACAAAAACAAAAACAAAAACCCAAAACAAAACAAAAAACAAAAGAAAAA  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AACAAAAACAAAAAC-AAAACCCAAAACAAAACAAAAAACAAAAGAAAAA  898

seq1  AAAAGTGTGACTAGTGGAATTAGGGCTGTTCAAATACAGTGGTGGCTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGTGACTAGTGGAATTAGGGCTGTTCAAATACAGTGGTGGCTTTT  948

seq1  GGGTCCTAGTCTGGAACTTGGGATGCAATTTTTCTTAGAAACTCAACAAT  1000
       |||||||||||||||||| |||||||||||||||||||||||| |||  
seq2  -GGTCCTAGTCTGGAACTT-GGATGCAATTTTTCTTAGAAACTC-ACA--  993

seq1  CCACTTAACAAACTTTGAAACACTAGATAGATGGAACCTGAACATCTGAA  1050
       |||||||||||| |||||||||||||||||||| ||||| ||||||| |
seq2  TCACTTAACAAAC-TTGAAACACTAGATAGATGG-ACCTG-ACATCTG-A  1039

seq1  CATTTT-GTGTTCTTTCTTATATCTC-ATACTTGAGAGATGTAGA-CTGG  1097
      |||||| |||| ||| |||||||||| |||||||||||||||||| ||||
seq2  CATTTTGGTGTCCTTCCTTATATCTCAATACTTGAGAGATGTAGACCTGG  1089

seq1  G-AGGCAGGAGGACTGGAAGTCAACTTTATCAC  1129
      | || |||||||||||  |||||   |||||||
seq2  GCAGCCAGGAGGACTG--AGTCA--CTTATCAC  1118