BAC Information

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BAC

Clone NameB6Ng01-345P04
Chromosome2 (Build37)
Map Location 72,265,597 - 72,266,697
singlet/doubletsinglet
Overlap geneB230120H23Rik
Upstream geneHat1, Metapl1, LOC100040207, Dlx1, Dlx1as, Dlx2, Gm1631, Itga6, Pdk1, Rapgef4, LOC100040270
Downstream geneCdca7, LOC383712, LOC635960, LOC100039928, 6430710C18Rik, Sp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345P04.b
ACCGA127987
length1,156
definitionB6Ng01-345P04.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttggggtgaggagatatatcctgaactacattcatactatgcta
ttgtctgcatctcttggtgataggtctttattacacgcttttggagctgc
tctgatctccctggggttccaaagtgcctgggatgacaactgccacagac
atccttttctcgacggaatatgagggagggaagaagaaatggaagagaag
agaattagaagaatacttgagattctggtagatttcccaaactggatgaa
cgaaactccagatattaaaaagcacaaaatatatcataatgcaaaattct
gggaattcagaaaaattctgggaattcttctccccctccccctccccctc
ctcttctttaatattcagtttttttcccctaccaaattaactggagccat
caacacctcagggtccttcgaaggaaggtgaccctcaaatgagcttttct
agattagttttactgaataatatggaatttttttttaaaaagggctttca
cattgagcaacaatctgcatgtaatgaaagcacagatcttttagctgcac
aggtcactgagcttgactagtgtctatacctgtgtagccaaccaagcagg
caagacatctacagtccttcagaagccccttccccaggcaagccctcttc
atagcaatcaaaggctgcccctgttctctttcacttcacacagactaaac
ttcacgatgtcacgtgtatacgcccagcctcagggttttgagatctattt
atgttatctaacccctatagtcttactctgttctagagagcacggttccc
attttatggataaagaaactgaggcttagatatcttacagccagcctcat
gggactggaatccatgccctagatacatcaagttcagtcttagagccact
agcttctccaacccccacctgctcctctcttcccataaatggagaaatat
aaaaccaccaactgtggagtactttaaaatataaactagagcgtcagaat
aactttctgaaaaaagcagagccggagagaaagatgcagcatagcagctg
actgctttgcgaagcatccgaataaaacaaaccacaaatatatgcctaca
gcctgtacagcagtaagtctactgaatgagtctctgaaggctccgtttac
atgagt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_72265597_72266697
seq2: B6Ng01-345P04.b_122_1199 (reverse)

seq1  ACACATGTAAA-GGAGCCTTCAGAGACCTCCATCAGTAGCATCTCCCTGC  49
      || |||||||| |||||||||||||| |||  |||||||   ||  ||||
seq2  ACTCATGTAAACGGAGCCTTCAGAGA-CTCATTCAGTAG--ACTTACTGC  47

seq1  TTTGTATACAGCTGTAGCCAATATTATTTTTGTGGGTTTTGTTTTTAATC  99
        |||| |  ||||||| ||    ||| |||||||  ||||||||  || 
seq2  --TGTACA-GGCTGTAGGCA----TATATTTGTGG--TTTGTTTT--ATT  86

seq1  CGGGATTGCTTCGCAAAAGCCAGTCAGCTGCTATGGCTGCATCTTTCTCT  149
      |||   |||||||||||   |||||||||||||| |||||||||||||||
seq2  CGG--ATGCTTCGCAAA--GCAGTCAGCTGCTAT-GCTGCATCTTTCTCT  131

seq1  CCCGGCTCTGC-TTTTTCAGAAAGTTTATTCTGACCGCTCTAGTTTATAT  198
       |||||||||| |||||||||||| ||||||||| |||||||||||||||
seq2  -CCGGCTCTGCTTTTTTCAGAAAG-TTATTCTGA-CGCTCTAGTTTATAT  178

seq1  TTTAAAGTACTCCCACAGTTGGTGGTTTTTATATTTCTCCATTTATGGGA  248
      ||||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  TTTAAAGTACT-CCACAGTTGGTGG-TTTTATATTTCTCCATTTATGGGA  226

seq1  AGAGAGGAGCAGGTGGGGGTTGGAGAAGCTAGTGGCTCTAAGACTGAACT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGAGCAGGTGGGGGTTGGAGAAGCTAGTGGCTCTAAGACTGAACT  276

seq1  TGATGTATCTAGGGCATGGATTCCAGTCCCATGAGGCTGGCTGTAAGATA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTATCTAGGGCATGGATTCCAGTCCCATGAGGCTGGCTGTAAGATA  326

seq1  TCTAAGCCTCAGTTTCTTTATCCATAAAATGGGAACCGTGCTCTCTAGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCCTCAGTTTCTTTATCCATAAAATGGGAACCGTGCTCTCTAGAA  376

seq1  CAGAGTAAGACTATAGGGGTTAGATAACATAAATAGATCTCAAAACCCTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTAAGACTATAGGGGTTAGATAACATAAATAGATCTCAAAACCCTG  426

seq1  AGGCTGGGCGTATACACGTGACATCGTGAAGTTTAGTCTGTGTGAAGTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGGCGTATACACGTGACATCGTGAAGTTTAGTCTGTGTGAAGTGA  476

seq1  AAGAGAACAGGGGCAGCCTTTGATTGCTATGAAGAGGGCTTGCCTGGGGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAACAGGGGCAGCCTTTGATTGCTATGAAGAGGGCTTGCCTGGGGA  526

seq1  AGGGGCTTCTGAAGGACTGTAGATGTCTTGCCTGCTTGGTTGGCTACACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTTCTGAAGGACTGTAGATGTCTTGCCTGCTTGGTTGGCTACACA  576

seq1  GGTATAGACACTAGTCAAGCTCAGTGACCTGTGCAGCTAAAAGATCTGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAGACACTAGTCAAGCTCAGTGACCTGTGCAGCTAAAAGATCTGTG  626

seq1  CTTTCATTACATGCAGATTGTTGCTCAATGTGAAAGCCCTTTTTAAAAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTACATGCAGATTGTTGCTCAATGTGAAAGCCCTTTTTAAAAAA  676

seq1  AAATTCCATATTCTTCAGTAAAACTAATCTAGAAAAGCTCATTTGAGGGT  748
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAATTCCATATTATTCAGTAAAACTAATCTAGAAAAGCTCATTTGAGGGT  726

seq1  CACCTTCCTTCTGAAGGACCCTGAGGTGTTGATGGCTCCAGTTAATTTGG  798
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCCTTC-GAAGGACCCTGAGGTGTTGATGGCTCCAGTTAATTTGG  775

seq1  TAGGGGAAAAAAACTGAATATTAAAGAAGAGGAGGGGGAGGGGGAGGGGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGAAAAAAACTGAATATTAAAGAAGAGGAGGGGGAGGGGGAGGGGG  825

seq1  AGAAGAATTCCCAGAATTCTTCTGAATTCCCAGAATTTTACAGTTTGATA  898
      |||||||||||||||||| |||||||||||||||||||| || | |||||
seq2  AGAAGAATTCCCAGAATTTTTCTGAATTCCCAGAATTTTGCATTATGATA  875

seq1  TATTTTGTGCTTTTTAATATCTGGAGTTTTGTTCCTCCTGTTTGGGAAAT  948
      ||||||||||||||||||||||||||||| |||| ||| |||||||||||
seq2  TATTTTGTGCTTTTTAATATCTGGAGTTTCGTTCATCCAGTTTGGGAAAT  925

seq1  CTACCACTATCTCAACTATTCTCTTAATTCTCTTCTCTTCCATTTCTTCT  998
      ||||||  ||||||| ||||||  ||||||||||||||||||||||||||
seq2  CTACCAGAATCTCAAGTATTCTTCTAATTCTCTTCTCTTCCATTTCTTCT  975

seq1  TCCCTCCCTCTTTTTATGTAGAGAAAAGGATGTCTGTGTGTGCTGTCATT  1048
      |||||||||| | ||  || ||||||||||||||||||   | |||||| 
seq2  TCCCTCCCTCATATTCCGTCGAGAAAAGGATGTCTGTGGCAGTTGTCATC  1025

seq1  TCAGCTACTTTGGAACTCCAGGGAACTGTGAGCAGCTCCAAAAGCGTGTA  1098
       |||  |||||||||| |||||||  |  |||||||||||||||||||||
seq2  CCAGGCACTTTGGAACCCCAGGGAGATCAGAGCAGCTCCAAAAGCGTGTA  1075

seq1  ATA  1101
      |||
seq2  ATA  1078