BAC Information

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BAC

Clone NameB6Ng01-346A09
Chromosome2 (Build37)
Map Location 121,489,976 - 121,586,423
singlet/doubletdoublet
Overlap geneFrmd5
Upstream geneStard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76
Downstream geneCasc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346A09.bB6Ng01-346A09.g
ACCGA128043GA128044
length5801,157
definitionB6Ng01-346A09.b B6Ng01-346A09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,489,976 - 121,490,561)(121,585,258 - 121,586,423)
sequence
tggaattaaaggcatgggccaccattgcctggcttgaaagagtcctttaa
catagaaaaaaaaaaaaaaacccaaaaacccaacaacaaacactaatggc
tgtgtctaccaccatgtgctaaggtaagtgagctaacatttgctcagtgc
tgctggctgctactcttgctttgtacagcagcagcttgggtctactgccc
tcagctgactgatgaaaaccagggccactgagaagctatgtgtcttcatt
tgtgtgacaaacaggggcttgcgaagttaagtgttctgggatgtggcttg
gtaataataacagagctgacacaggatgctccaggccctcagtctgatgt
cctggcatcaccaccaaggaaggagaaagagagaaagggggaagatcaga
ggaggaggaaggaggggtcactaggtgccagtgaggatagggaggaagac
agagaggaagttagataatgggtgttgaagtacagttaagttcttgtctt
ttgtactctactggtgtgactacggtttataaaagcctattatgtatttt
atgaaggggagagagagagagagagagaga
gaattctgcaggacaaagctcccaaagtggctcccgttggaggaaacatg
gtggcggctgtgaggttggacaggaaaaggcccttgcttctgctcaggac
tctcgttcgatctattgcatggcacggattggtgcgcagggcttccctct
gaaagtttctcctgcagtatctcttaccattcttggaaatggctttaagc
tgtcttttcttgtttggagttaatgggacactggagcagaaacagttata
gtgttgtctgagctcttcgcggaacctcaaaggattactttcacattttg
tttgttttaaattaaaaatgcctctgagatatgaatggcagaggaaagac
acaagcggatgcgctgtcactcctcaatggagtcttcagaaatggaaggt
ggctctgctctcgttctgggaccccacggagaatagagtgatccttcagt
aaacccttttccaggtggcccttctccctctaagattacagtgaatccga
atgggcaggcttctgcttttgagacgttcatgaaatgtgtaaagattggg
tttagagttaagagacaaaattttttttttttactagattctctgtcctt
cccttgctccttttcttaaggagctgggtgctgcggattgtgtgtgtgcg
cgcatacactctggcatgtgagtagtagccagaggacaactttatgaact
ttcttctctccttccacttttgcttgggctctagagatcaaagtaggctt
ccagcctgggcactcttacccagtgagccaacttgccagccctcattgtc
cattttagattgggcgacgttaagagcatctcatcaagattcccaatata
attaaccctggggcttgagggttagttacctggattaaagttagtttggc
ttagcctttgtattattatctctttcaaagtagggcttcctggggattct
gaggacttatgtagaagctgatatgaaaggacttaaatgatgtcagttgg
aaggctgctcatctagatctggagaaaggaaaaaaaaagtctgtaaaaag
agtggggacagcaagtcactgaagacaggtagaggagctggagctgagta
tctctgatgggtggtgacaggatgtgatctcaagttgaagctgaagtgcc
aggtggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_121489976_121490561
seq2: B6Ng01-346A09.b_45_630

seq1  GAATTCTGGAATTAAAGGCATGGGCCACCATTGCCTGGCTTGAAAGAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAATTAAAGGCATGGGCCACCATTGCCTGGCTTGAAAGAGTC  50

seq1  CTTTAACATAGAAAAAAAAAAAAAAACCCAAAAACCCAACAACAAACACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACATAGAAAAAAAAAAAAAAACCCAAAAACCCAACAACAAACACT  100

seq1  AATGGCTGTGTCTACCACCATGTGCTAAGGTAAGTGAGCTAACATTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTGTGTCTACCACCATGTGCTAAGGTAAGTGAGCTAACATTTGCT  150

seq1  CAGTGCTGCTGGCTGCTACTCTTGCTTTGTACAGCAGCAGCTTGGGTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTGCTGGCTGCTACTCTTGCTTTGTACAGCAGCAGCTTGGGTCTA  200

seq1  CTGCCCTCAGCTGACTGATGAAAACCAGGGCCACTGAGAAGCTATGTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTCAGCTGACTGATGAAAACCAGGGCCACTGAGAAGCTATGTGTC  250

seq1  TTCATTTGTGTGACAAACAGGGGCTTGCGAAGTTAAGTGTTCTGGGATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTGTGTGACAAACAGGGGCTTGCGAAGTTAAGTGTTCTGGGATGT  300

seq1  GGCTTGGTAATAATAACAGAGCTGACACAGGATGCTCCAGGCCCTCAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGTAATAATAACAGAGCTGACACAGGATGCTCCAGGCCCTCAGTC  350

seq1  TGATGTCCTGGCATCACCACCAAGGAAGGAGAAAGAGAGAAAGGGGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCCTGGCATCACCACCAAGGAAGGAGAAAGAGAGAAAGGGGGAAG  400

seq1  ATCAGAGGAGGAGGAAGGAGGGGTCACTAGGTGCCAGTGAGGATAGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGGAGGAGGAAGGAGGGGTCACTAGGTGCCAGTGAGGATAGGGAG  450

seq1  GAAGACAGAGAGGAAGTTAGATAATGGGTGTTGAAGTACAGTTAAGTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGAGAGGAAGTTAGATAATGGGTGTTGAAGTACAGTTAAGTTCT  500

seq1  TGTCTTTTGTACTCTACTGGTGTGACTACGGTTTATAAAAGCCTATTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTGTACTCTACTGGTGTGACTACGGTTTATAAAAGCCTATTATG  550

seq1  TATTTTATGAAGGGGAGAGAGAGAGAGAGAGAGAGA  586
      ||||||||||||||||||||||||||||||||||||
seq2  TATTTTATGAAGGGGAGAGAGAGAGAGAGAGAGAGA  586

seq1: chr2_121585258_121586423
seq2: B6Ng01-346A09.g_68_1224 (reverse)

seq1  -------GCCACCTCAGCTTCAACCTGAGTTTCACATCCTGTCACCA-CC  42
             | ||| ||||||||||| ||||  |||||||||||||||| ||
seq2  GCCACCTGGCACTTCAGCTTCAACTTGAG-ATCACATCCTGTCACCACCC  49

seq1  ATCAGAGGATAACCCTCAGCTCCCAGCCTCCTCTTACCCTGTCCTCAGTT  92
      |||||| ||||   ||||||| |||| |||||||   |||||| |||| |
seq2  ATCAGA-GATA---CTCAGCT-CCAG-CTCCTCT--ACCTGTCTTCAG-T  90

seq1  GACCTGCTTGGTCCCCACTCTTTTTACCAGACTTTTTTTTTCCTTTCTCC  142
      ||| ||||  |||||||||||||||| |||||||||||||||||||||||
seq2  GACTTGCT--GTCCCCACTCTTTTTA-CAGACTTTTTTTTTCCTTTCTCC  137

seq1  AGATCTTAGATGAGCAGCCTTCCAACCTGACATCATTTAAGTCCCTTTCA  192
      ||||| ||||||||||||||||||| |||||||||||||||| |||||||
seq2  AGATC-TAGATGAGCAGCCTTCCAA-CTGACATCATTTAAGT-CCTTTCA  184

seq1  TATCAGCCTTCTACATAAGTCCTCAGAATCCCCAGGAAGCCCTACTTTGA  242
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAG-CTTCTACATAAGTCCTCAGAATCCCCAGGAAGCCCTACTTTGA  233

seq1  AAGAGATAATAATACAAAGGCTAAGCCAAACTAACTTTAATCCAGGTAAC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATAATAATACAAAGGCTAAGCCAAACTAACTTTAATCCAGGTAAC  283

seq1  TAACCCTCAAGCCCCAGGGTTAATTATATTGGGAATCTTGATGAGATGCT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTCAAGCCCCAGGGTTAATTATATTGGGAATCTTGATGAGATGCT  333

seq1  CTTAACGTCGCCCAATCTAAAATGGACAATGAGGGCTGGCAAGTTGGCTC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACGTCGCCCAATCTAAAATGGACAATGAGGGCTGGCAAGTTGGCTC  383

seq1  ACTGGGTAAGAGTGCCCAGGCTGGAAGCCTACTTTGATCTCTAGAGCCCA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTAAGAGTGCCCAGGCTGGAAGCCTACTTTGATCTCTAGAGCCCA  433

seq1  AGCAAAAGTGGAAGGAGAGAAGAAAGTTCATAAAGTTGTCCTCTGGCTAC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAGTGGAAGGAGAGAAGAAAGTTCATAAAGTTGTCCTCTGGCTAC  483

seq1  TACTCACATGCCAGAGTGTATGCGCGCACACACACAATCCGCAGCACCCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACATGCCAGAGTGTATGCGCGCACACACACAATCCGCAGCACCCA  533

seq1  GCTCCTTAAGAAAAGGAGCAAGGGAAGGACAGAGAATCTAGTAAAAAAAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTAAGAAAAGGAGCAAGGGAAGGACAGAGAATCTAGTAAAAAAAA  583

seq1  AAAATTTTGTCTCTTAACTCTAAACCCAATCTTTACACATTTCATGAACG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTGTCTCTTAACTCTAAACCCAATCTTTACACATTTCATGAACG  633

seq1  TCTCAAAAGCAGAAGCCTGCCCATTCGGATTCACTGTAATCTTAGAGGGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAAGCAGAAGCCTGCCCATTCGGATTCACTGTAATCTTAGAGGGA  683

seq1  GAAGGGCCACCTGGAAAAGGGTTTACTGAAGGATCACTCTATTCTCCGTG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCCACCTGGAAAAGGGTTTACTGAAGGATCACTCTATTCTCCGTG  733

seq1  GGGTCCCAGAACGAGAGCAGAGCCACCTTCCATTTCTGAAGACTCCATTG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCCAGAACGAGAGCAGAGCCACCTTCCATTTCTGAAGACTCCATTG  783

seq1  AGGAGTGACAGCGCATCCGCTTGTGTCTTTCCTCTGCCATTCATATCTCA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGACAGCGCATCCGCTTGTGTCTTTCCTCTGCCATTCATATCTCA  833

seq1  GAGGCATTTTTAATTTAAAACAAACAAAATGTGAAAGTAATCCTTTGAGG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATTTTTAATTTAAAACAAACAAAATGTGAAAGTAATCCTTTGAGG  883

seq1  TTCCGCGAAGAGCTCAGACAACACTATAACTGTTTCTGCTCCAGTGTCCC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGCGAAGAGCTCAGACAACACTATAACTGTTTCTGCTCCAGTGTCCC  933

seq1  ATTAACTCCAAACAAGAAAAGACAGCTTAAAGCCATTTCCAAGAATGGTA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTCCAAACAAGAAAAGACAGCTTAAAGCCATTTCCAAGAATGGTA  983

seq1  AGAGATACTGCAGGAGAAACTTTCAGAGGGAAGCCCTGCGCACCAATCCG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATACTGCAGGAGAAACTTTCAGAGGGAAGCCCTGCGCACCAATCCG  1033

seq1  TGCCATGCAATAGATCGAACGAGAGTCCTGAGCAGAAGCAAGGGCCTTTT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGCAATAGATCGAACGAGAGTCCTGAGCAGAAGCAAGGGCCTTTT  1083

seq1  CCTGTCCAACCTCACAGCCGCCACCATGTTTCCTCCAACGGGAGCCACTT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCAACCTCACAGCCGCCACCATGTTTCCTCCAACGGGAGCCACTT  1133

seq1  TGGGAGCTTTGTCCTGCAGAATTC  1166
      ||||||||||||||||||||||||
seq2  TGGGAGCTTTGTCCTGCAGAATTC  1157