BAC Information

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BAC

Clone NameB6Ng01-346G04
Chromosome2 (Build37)
Map Location 48,047,771 - 48,110,244
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC383691, LOC100041457, LOC383692, Acvr2a, Orc4l, LOC100041508, Mbd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346G04.bB6Ng01-346G04.g
ACCGA128298GA128299
length1,2061,004
definitionB6Ng01-346G04.b B6Ng01-346G04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,109,036 - 48,110,244)(48,047,771 - 48,048,696)
sequence
gaattctctgaactgaaacatagggaagattcaagatagtcctgagatta
gtcaagctttccagaaacagcaaagtagagttctggttgttctttgaaag
cacagcctcattttgtgtgagtgctccaaaatttgtagaccctacgcaac
gttctcagtgaaccctcacaacaatctcacaaggaaatgaaagattttaa
aaatatgaagaggcttccatatctgatcaaatatgtccaccagcttagat
gaaaacaaatttcatttctttaaaaaacaagttctgtatactgtgatctc
ctgtgcaatgcccttcaatctttaaaagagcactgctttttaataagctc
tagtctaaggtaatatatatatatatatatatatatatatatatatatat
atatatatatacacttccaggaattgatcaatttacttcgggagcaacag
aatagaagccaaaggtcacaaactgtcggtttcatttattttctagactt
aaaatctattaattaagatttttttctctcaaagaacttcaggaaaaaat
tatttctacttttagagttttaaaacgtcttttagtaaattatctctagt
tctactgagagaacaacatgtgtttcagagctgtaattatgtataatttt
ttttcaatttccacgttttacagagcattgggctctgagtatctaccata
ctataatacaaatgattaattaataagtggctttacactacataagatcc
actttgtctctttggcatgggggtagatagacttttattagggatttacc
agctttcaagctactgtcttgaatctaatcaagtttaatctttgattttt
atagtttccaattttcattgggatcccgccatgctcattctatcatatat
tttccatgggctgctctcaagatacaatggctaattggaatagaccatat
tgcctaaaggccttatagcaaaagtttgtcaaggtatcatgtaaagatca
tgattcagaatgtatcttaaacttttgttgtttattataaattcagaagg
gacctaatgatgatttcatggcctaatccctctgacacccgatgtcaagg
tggtggagaaaacacacatgcattgaagatgtggagcttggttggaggca
tgattgtctctgtctaactgtcactgagaacattatcatcttgccttcac
tttctc
gaattcagttagtctacattggctacttgcactagagatacccactgagc
catcatcctactccttcttaatattttaaaaatagaagccttgtcttaat
ttgttgggtttcatttttctgatagaacacatgctgttctcaaaatactc
tgaatattcaccatctaagcacattgttgattcttcaatttcaattgaat
taataaggggttatataaagccttagcatgacaacctccaagacagtcat
ctctttatatcacctttttagagagaatgatttgtttttccatttaaggg
aggagtgaaaacttactctacattagaaggtatttttgcaaatacatatg
tttgatatacagcttaatttgtataaaacaaacaatgggcaatattaggt
taaacaatgtttttgtatgattaagaattagcccagaaacttagaatacc
taagatacaatttgcaaaacacatgaaactcaagaagaaggaagaccaaa
atgtggatacttcattccttcttagaatggagaacaaaatacccatggaa
ggagtttcagagacaaagctcagagcagaacctgaaggaatgaccatcca
gagactgccccacttggggatccaccccataaacaatcaccaaacccagt
cattaagcagatgccaacaagagcttgctgacaggagcctgatatagctg
tctcctgtgaggctttgccagtgcctggcaaatacagaagtggatgctca
tagtcatccattggacagagcacaaggtccccaatgaaggagccaaagaa
atacccagggagctgaaggggtttgcaaccccataagagaaacatcaata
tgaactaaccagtacatccagatctacttagaattataccatcaatcaaa
gaaaacacatggtagaacttgtggctctagctatatatgtagcagaggat
ggcctagtaggtcatcaatgagaggagaggcccttggcatgtgaaggctc
tatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_48109036_48110244
seq2: B6Ng01-346G04.b_41_1246 (reverse)

seq1  GAGAAAGTGAAGCAAAGATGAATAATTTGTCTCAGGTGACAGGTAGGACA  50
      ||||||||||||  |||||| ||||| | ||||| ||||||| || ||||
seq2  GAGAAAGTGAAGGCAAGATG-ATAATGT-TCTCA-GTGACAGTTA-GACA  46

seq1  GAGACAAATCAAAACTCAAACCAAGCTCCAACATCTTC-ATGCATGTG--  97
      ||||| |||||   ||| ||||||||||| |||||||| |||||||||  
seq2  GAGAC-AATCATGCCTCCAACCAAGCTCC-ACATCTTCAATGCATGTGTG  94

seq1  -TTTCTCAAC--ACTTGACATCGGTTGTCAGA-GGATTA-GCCATGAAAT  142
       |||||| ||   ||||||||||| ||||||| |||||| ||||||||||
seq2  TTTTCTCCACCACCTTGACATCGGGTGTCAGAGGGATTAGGCCATGAAAT  144

seq1  CATCATTAGGTCCCTTCTGGATTTATTAATAAACAACAAAAGTTTAAGAT  192
      ||||||||||||||||||| ||||| ||||||||||||||||||||||||
seq2  CATCATTAGGTCCCTTCTGAATTTA-TAATAAACAACAAAAGTTTAAGAT  193

seq1  ACATTCCTGAATCATGATCTTTTACATGATACCTTGACAAACTTTTGCTA  242
      ||||| ||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACATT-CTGAATCATGATC-TTTACATGATACCTTGACAAACTTTTGCTA  241

seq1  TAAAGGCTTTAGGCAATATGGTCTATTCCAATTAGCCATTGTATCTTGAG  292
      ||| | ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCCTTTAGGCAATATGGTCTATTCCAATTAGCCATTGTATCTTGAG  291

seq1  AGCAG-CCATGGAAAATATATGATAGAATGAGCATGGCGGGATCCCAATG  341
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCCATGGAAAATATATGATAGAATGAGCATGGCGGGATCCCAATG  341

seq1  AAAATTTGGAAACTATAAAAATCAAAGATTAAACTTGATTAGATTCAAGA  391
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAA-TTGGAAACTATAAAAATCAAAGATTAAACTTGATTAGATTCAAGA  390

seq1  CAGTAGCTTGAAACTGCTGGTAAATCCCTAATAAAAGTCTATCTACCCCC  441
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  CAGTAGCTTGAAA--GCTGGTAAATCCCTAATAAAAGTCTATCTACCCCC  438

seq1  ATGCCAAAGAGACAAAGTGGATCTTATGTAGTGTAAAGCCACTTATTAAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAAAGAGACAAAGTGGATCTTATGTAGTGTAAAGCCACTTATTAAT  488

seq1  TAATCATTTGTATTATAGTATGGTAGATACTCAGAGCCCAATGCTCTGTA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATTTGTATTATAGTATGGTAGATACTCAGAGCCCAATGCTCTGTA  538

seq1  AAACGTGGAAATTGAAAAAAAATTATACATAATTACAGCTCTGAAACACA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTGGAAATTGAAAAAAAATTATACATAATTACAGCTCTGAAACACA  588

seq1  TGTTGTTCTCTCAGTAGAACTAGAGATAATTTACTAAAAGACGTTTTAAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTCTCTCAGTAGAACTAGAGATAATTTACTAAAAGACGTTTTAAA  638

seq1  ACTCTAAAAGTAGAAATAATTTTTTCCTGAAGTTCTTTGAGAGAAAAAAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAAAAGTAGAAATAATTTTTTCCTGAAGTTCTTTGAGAGAAAAAAA  688

seq1  TCTTAATTAATAGATTTTAAGTCTAGAAAATAAATGAAACCGACAGTTTG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTAATAGATTTTAAGTCTAGAAAATAAATGAAACCGACAGTTTG  738

seq1  TGACCTTTGGCTTCTATTCTGTTGCTCCCGAAGTAAATTGATCAATTCCT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTTGGCTTCTATTCTGTTGCTCCCGAAGTAAATTGATCAATTCCT  788

seq1  GGAAGTGTATATATATATATATATATATATATATATATATATATATATAT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGTATATATATATATATATATATATATATATATATATATATATAT  838

seq1  ATATATTACCTTAGACTAGAGCTTATTAAAAAGCAGTGCTCTTTTAAAGA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTACCTTAGACTAGAGCTTATTAAAAAGCAGTGCTCTTTTAAAGA  888

seq1  TTGAAGGGCATTGCACAGGAGATCACAGTATACAGAACTTGTTTTTTAAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGGCATTGCACAGGAGATCACAGTATACAGAACTTGTTTTTTAAA  938

seq1  GAAATGAAATTTGTTTTCATCTAAGCTGGTGGACATATTTGATCAGATAT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAATTTGTTTTCATCTAAGCTGGTGGACATATTTGATCAGATAT  988

seq1  GGAAGCCTCTTCATATTTTTAAAATCTTTCATTTCCTTGTGAGATTGTTG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCTCTTCATATTTTTAAAATCTTTCATTTCCTTGTGAGATTGTTG  1038

seq1  TGAGGGTTCACTGAGAACGTTGCGTAGGGTCTACAAATTTTGGAGCACTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTTCACTGAGAACGTTGCGTAGGGTCTACAAATTTTGGAGCACTC  1088

seq1  ACACAAAATGAGGCTGTGCTTTCAAAGAACAACCAGAACTCTACTTTGCT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAATGAGGCTGTGCTTTCAAAGAACAACCAGAACTCTACTTTGCT  1138

seq1  GTTTCTGGAAAGCTTGACTAATCTCAGGACTATCTTGAATCTTCCCTATG  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGGAAAGCTTGACTAATCTCAGGACTATCTTGAATCTTCCCTATG  1188

seq1  TTTCAGTTCAGAGAATTC  1209
      ||||||||||||||||||
seq2  TTTCAGTTCAGAGAATTC  1206

seq1: chr2_48047771_48048696
seq2: B6Ng01-346G04.g_65_990

seq1  GAATTCAGTTAGTCTACATTGGCTACTTGCACTAGAGATACCCACTGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTAGTCTACATTGGCTACTTGCACTAGAGATACCCACTGAGC  50

seq1  CATCATCCTACTCCTTCTTAATATTTTAAAAATAGAAGCCTTGTCTTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCCTACTCCTTCTTAATATTTTAAAAATAGAAGCCTTGTCTTAAT  100

seq1  TTGTTGGGTTTCATTTTTCTGATAGAACACATGCTGTTCTCAAAATACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGGTTTCATTTTTCTGATAGAACACATGCTGTTCTCAAAATACTC  150

seq1  TGAATATTCACCATCTAAGCACATTGTTGATTCTTCAATTTCAATTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTCACCATCTAAGCACATTGTTGATTCTTCAATTTCAATTGAAT  200

seq1  TAATAAGGGGTTATATAAAGCCTTAGCATGACAACCTCCAAGACAGTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGGGGTTATATAAAGCCTTAGCATGACAACCTCCAAGACAGTCAT  250

seq1  CTCTTTATATCACCTTTTTAGAGAGAATGATTTGTTTTTCCATTTAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTATATCACCTTTTTAGAGAGAATGATTTGTTTTTCCATTTAAGGG  300

seq1  AGGAGTGAAAACTTACTCTACATTAGAAGGTATTTTTGCAAATACATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGAAAACTTACTCTACATTAGAAGGTATTTTTGCAAATACATATG  350

seq1  TTTGATATACAGCTTAATTTGTATAAAACAAACAATGGGCAATATTAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATATACAGCTTAATTTGTATAAAACAAACAATGGGCAATATTAGGT  400

seq1  TAAACAATGTTTTTGTATGATTAAGAATTAGCCCAGAAACTTAGAATACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAATGTTTTTGTATGATTAAGAATTAGCCCAGAAACTTAGAATACC  450

seq1  TAAGATACAATTTGCAAAACACATGAAACTCAAGAAGAAGGAAGACCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATACAATTTGCAAAACACATGAAACTCAAGAAGAAGGAAGACCAAA  500

seq1  ATGTGGATACTTCATTCCTTCTTAGAATGGAGAACAAAATACCCATGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGATACTTCATTCCTTCTTAGAATGGAGAACAAAATACCCATGGAA  550

seq1  GGAGTTTCAGAGACAAAGCTCAGAGCAGAACCTGAAGGAATGACCATCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTCAGAGACAAAGCTCAGAGCAGAACCTGAAGGAATGACCATCCA  600

seq1  GAGACTGCCCCACTTGGGGATCCACCCCATAAACAATCACCAAACCCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGCCCCACTTGGGGATCCACCCCATAAACAATCACCAAACCCAGT  650

seq1  CATTAAGCAGATGCCAACAAGAGCTTGCTGACAGGAGCCTGATATAGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGCAGATGCCAACAAGAGCTTGCTGACAGGAGCCTGATATAGCTG  700

seq1  TCTCCTGTGAGGCTTTGCCAGTGCCTGGCAAATACAGAAGTGGATGCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTGAGGCTTTGCCAGTGCCTGGCAAATACAGAAGTGGATGCTCA  750

seq1  TAGTCATCCATTGGACAGAGCACAAGGTCCCCAATGAAGGAGCCAAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATCCATTGGACAGAGCACAAGGTCCCCAATGAAGGAGCCAAAGAA  800

seq1  ATACCCAGGGAGCTGAAGGGGTTTGCAACCCCATAAGAGAAACATCAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCAGGGAGCTGAAGGGGTTTGCAACCCCATAAGAGAAACATCAATA  850

seq1  TGAACTAACCAGTACATCCAGATCTACTTAGAATTATACCATCAATCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTAACCAGTACATCCAGATCTACTTAGAATTATACCATCAATCAAA  900

seq1  GAAAACACATGGTAGAACTTGTGGCT  926
      ||||||||||||||||||||||||||
seq2  GAAAACACATGGTAGAACTTGTGGCT  926