BAC Information

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BAC

Clone NameB6Ng01-346G07
Chromosome2 (Build37)
Map Location 78,428,466 - 78,429,664
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp533, BC003993, LOC667920, OTTMUSG00000016703, LOC383717
Downstream geneLOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl, Neurod1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346G07.bB6Ng01-346G07.g
ACCGA128304GA128305
length9601,186
definitionB6Ng01-346G07.b B6Ng01-346G07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatttagaggactagaagatggctcagtaattaatatcacggact
gctcttgcagaggatctatgctcaattctcagcatcaagaaggtataacc
atctgtcattccagttttagggcctgcaacacctagaaacctgggacagg
gattgtggaggcactaatggtgtagattccagattagactcctagcagtg
tgggatatggatcctgaagtgaccacttcctgtagccaggcagtactcac
aaaggaggagtaaggatagcaacctacccacaaaacttttgaccaaaaat
gtgtcctgcctacacaatgtgcagggactaagataaaacagagacagagg
aaatagccaaccaatgactggccaaaattgagatccattccatgggtaag
aaccaatccctgacactattaaggatactctgttatgcttgcaaagaaaa
gcataccataactgttctctgagaggctcaatccagcagacaaaggcacc
agatacagagacccacacccaaacattagatggagctcagggagtcttgc
agaagagttgagagaaggaataaaattcccaaagaggacagtgactccac
agaaaaaccaacaaactcacctaacctgaacttttagggctcccaaaaac
agaaccaccaaccaaagaggaggtatggactagacctagcaccctgcaca
tatgtagcagaagaggagcatggtcttcatgctggtcccccaacagttga
agcaagggctgtccctaaatctgttgcctgcctgtggatccgctttctct
agctgggccaccttgtctggcctcagtgggagaagatgcacctagtcctt
cagtaacttgacatgctgggagtgttggggagctaaacccttctcagagg
agaggagaaggaggaatgtggggcatatctgtgtgaggtgtactggggag
agaggggctg

gaattcagaagacctatagagttatgctgtctgttaggtcaatgtctaac
cctatgtggctactaccctttgaaatgtggctgatacttaaatgagtaat
tctgtgactataaaaaggcactatcttgtaaagacttagtgcaacctaaa
tgtaaagaattccactagtaatatcttaatatttattatggttccaaatg
ataataatttaatgtgaattatatagaatacatgattaaaagtaattttt
atctgttttcaaacagggattatgctcttcagtcagaagtgctgaggtat
gcctttgagggatataatttcctatttgggtggggacattgaagaattaa
cttatagactgagtcatttctagaactatctatgaacaaacacaggatac
cctagaagtcatgtatcaaactaaacaggtgatcttaggtaaatgtatct
tatttttctaagaagatctgtgatacatttggacacatcacaggtttccc
atggttgagtcactttcaatggggcatgggcacctactgaatgtcttctg
tgccagtgtgtggctaattggccatatgcccagattgctacagccctctt
tgggtcagtaatagtcctggttcttgggtgaagaactgctcacctctcag
aggtgaattaactctttctgaacactagggcaccattaagcacactagaa
aaaaagtaatttactcaatggtcctctaaggacaccctggagaagagaac
agaagctgtgaaatgctaagctcgcatggaattactgcagaatcaattag
ggaaacaagacaaattagatggcatgtgctctgtccaattgagacagaaa
gaatctttatgggcaggatgtaattgcctgatggaaatgtggctaagaaa
atttgtgttttctgagaaggactttgaaaggaaagaagaaagcatgctaa
catttctgttctgtattaaaatatattgcatgcttttgtgctttagactt
ataattactacatgctgctgtgccttcacttctactttagcttaccatgt
acctatttttgatccactaaactggattggaaattgcttcaggagattct
tctctaccacacacattctacaactatgtgatcatgggccagtttctttc
ccttagctctcgctaggaatatggttatagaatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_78428466_78429664
seq2: B6Ng01-346G07.g_66_1251 (reverse)

seq1  CACAATCTATAACATTATCTCCAAAGCGAGAAGCTAAGAGGAAAGAAACT  50
      |||| ||||||||  ||| |||  |||||| ||||||| |||||||||||
seq2  CACATTCTATAACCATAT-TCC-TAGCGAG-AGCTAAG-GGAAAGAAACT  46

seq1  -GCCCATGATCACATAGTTTGGTAGA---TGTGTGGTAGGAGAAGTATCT  96
       ||||||||||||||||||  |||||   ||||||||| |||||| ||||
seq2  GGCCCATGATCACATAGTT--GTAGAATGTGTGTGGTA-GAGAAGAATCT  93

seq1  CTTGAAGGCAAATTTCCCAATTCCCAGTTTAGT-GATCAAAAATTAGGTA  145
      | |||| ||||  || |||||  |||||||||| ||||||||| ||||||
seq2  CCTGAA-GCAA--TTTCCAAT--CCAGTTTAGTGGATCAAAAA-TAGGTA  137

seq1  CATTGGTTAAGCTAAAGTAGAAGTGAAGGCAACAGCAGCATGTAGTTAAT  195
      |||  | ||||||||||||||||||||||| |||||||||||||| ||||
seq2  CAT--GGTAAGCTAAAGTAGAAGTGAAGGC-ACAGCAGCATGTAG-TAAT  183

seq1  TATAAGTCTTAAAGCACAAAAGCATGCAATATATTTTAATACAGAACAGA  245
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTC-TAAAGCACAAAAGCATGCAATATATTTTAATACAGAACAGA  232

seq1  AATGTTAGCATGCTTTCTTCTTTCCTTTCAAAGTCCTTCTCAGAAAACAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAGCATGCTTTCTTCTTTCCTTTCAAAGTCCTTCTCAGAAAACAC  282

seq1  AAATTTTCTTAGCCACATTTCCATCAGGCAATTACATCCTGCCCATAAAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCTTAGCCACATTTCCATCAGGCAATTACATCCTGCCCATAAAG  332

seq1  ATTCTTTCTGTCTCAATTGGACAGAGCACATGCCATCTAATTTGTCTTGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTCTGTCTCAATTGGACAGAGCACATGCCATCTAATTTGTCTTGT  382

seq1  TTCCCTAATTGATTCTGCAGTAATTCCATGCGAGCTTAGCATTTCACAGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAATTGATTCTGCAGTAATTCCATGCGAGCTTAGCATTTCACAGC  432

seq1  TTCTGTTCTCTTCTCCAGGGTGTCCTTAGAGGACCATTGAGTAAATTACT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCTCTTCTCCAGGGTGTCCTTAGAGGACCATTGAGTAAATTACT  482

seq1  TTTTTTCTAGTGTGCTTAATGGTGCCCTAGTGTTCAGAAAGAGTTAATTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTAGTGTGCTTAATGGTGCCCTAGTGTTCAGAAAGAGTTAATTC  532

seq1  ACCTCTGAGAGGTGAGCAGTTCTTCACCCAAGAACCAGGACTATTACTGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGAGAGGTGAGCAGTTCTTCACCCAAGAACCAGGACTATTACTGA  582

seq1  CCCAAAGAGGGCTGTAGCAATCTGGGCATATGGCCAATTAGCCACACACT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGAGGGCTGTAGCAATCTGGGCATATGGCCAATTAGCCACACACT  632

seq1  GGCACAGAAGACATTCAGTAGGTGCCCATGCCCCATTGAAAGTGACTCAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGAAGACATTCAGTAGGTGCCCATGCCCCATTGAAAGTGACTCAA  682

seq1  CCATGGGAAACCTGTGATGTGTCCAAATGTATCACAGATCTTCTTAGAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGAAACCTGTGATGTGTCCAAATGTATCACAGATCTTCTTAGAAA  732

seq1  AATAAGATACATTTACCTAAGATCACCTGTTTAGTTTGATACATGACTTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGATACATTTACCTAAGATCACCTGTTTAGTTTGATACATGACTTC  782

seq1  TAGGGTATCCTGTGTTTGTTCATAGATAGTTCTAGAAATGACTCAGTCTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTATCCTGTGTTTGTTCATAGATAGTTCTAGAAATGACTCAGTCTA  832

seq1  TAAGTTAATTCTTCAATGTCCCCACCCAAATAGGAAATTATATCCCTCAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTAATTCTTCAATGTCCCCACCCAAATAGGAAATTATATCCCTCAA  882

seq1  AGGCATACCTCAGCACTTCTGACTGAAGAGCATAATCCCTGTTTGAAAAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATACCTCAGCACTTCTGACTGAAGAGCATAATCCCTGTTTGAAAAC  932

seq1  AGATAAAAATTACTTTTAATCATGTATTCTATATAATTCACATTAAATTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAAATTACTTTTAATCATGTATTCTATATAATTCACATTAAATTA  982

seq1  TTATCATTTGGAACCATAATAAATATTAAGATATTACTAGTGGAATTCTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATTTGGAACCATAATAAATATTAAGATATTACTAGTGGAATTCTT  1032

seq1  TACATTTAGGTTGCACTAAGTCTTTACAAGATAGTGCCTTTTTATAGTCA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTAGGTTGCACTAAGTCTTTACAAGATAGTGCCTTTTTATAGTCA  1082

seq1  CAGAATTACTCATTTAAGTATCAGCCACATTTCAAAGGGTAGTAGCCACA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTACTCATTTAAGTATCAGCCACATTTCAAAGGGTAGTAGCCACA  1132

seq1  TAGGGTTAGACATTGACCTAACAGACAGCATAACTCTATAGGTCTTCTGA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTAGACATTGACCTAACAGACAGCATAACTCTATAGGTCTTCTGA  1182

seq1  ATTC  1199
      ||||
seq2  ATTC  1186


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