BAC Information

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BAC

Clone NameB6Ng01-346J03
Chromosome2 (Build37)
Map Location 167,984,783 - 168,127,962
singlet/doubletdoublet
Overlap geneAdnp, Dpm1, Mocs3, LOC100043908, Kcng1
Upstream geneKcnb1, Ptgis, LOC668951, B4galt5, Slc9a8, Spata2, Zfp313, Snai1, Ube2v1, AI840826, Cebpb, LOC100043728, Ptpn1, 2310033K02Rik, Pard6b
Downstream geneLOC668952, Nfatc2, Atp9a, Sall4, Zfp64, LOC100043909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346J03.bB6Ng01-346J03.g
ACCGA128431GA128432
length1,2051,043
definitionB6Ng01-346J03.b B6Ng01-346J03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(168,126,735 - 168,127,962)(167,984,783 - 167,985,824)
sequence
gaattcagatttgaattcataatcagcaaaaggcactgattaggtcaaag
ccctcctggtctcccctgagcatcctcaaggatcaagccaggcgtgctct
ttacaaacctcctaggcacctgccaatccaatcgggctgacaggattaat
cacggtggcacctcatttccattgattagcataattaccattgtcctcct
gggaaatgagcaatgctgagggatctgacttcctgggaaacttacagctt
ctgggacaggtagggtagagtctggggtgacctttctggtcttaacactt
gcttgttccctccccaccccctctgctagcatccatagctcagtgagttt
ggagagccttgatatgatagggcagatcttctgtagggggacagagacct
tagaatgaatatataagaaggaactcaccggactggcttctgacaatggc
cacctgcctgctacagagcctgactgcccagcagctgctcaatccactaa
gccagacccctcagcagttccagtctggcaatgggtgcctggagggtccc
tggagcgtcactggccttcagtccatgatggaagctgaagacactgatag
cagcaagcacgatggccatggccagggtgacaaccgagtagacagtccca
gcaaggcagggaagcaggcaagctgccttctccctggatcttggtttctg
ggcccaccagaaggtgccgcctactgtgtggaaggtgttcccccacttag
aaaaccctttctgaaaatgccccccccacacacacttttcctgcccagag
ttgtatatcttacttgattccagacaccatcaggttgaaaaccaggaata
accatcgcacccatgtaggtctctacactaaccactcggcttgactcccc
tgtcatcccaactccaaggatgtgctggaaacacaggtgatatgctcaat
ggaatcagaagccaagctcagcaaacctagcaacccacctagcttacaca
gcttaatagtaatgatggagctggcaccatggcagtctgaaccccacccc
agtcatgtcctgaagcttgagctgtatctccgtgtcttactctgcaagat
tagaattacatgcatgtacctcctggttgtgttctgtgaggtattctaga
gaactgatgaggaggatgacaccttgctgaaccacgccatcccaacactg
ccgtt
gaattcctaataattaacccgggatccccgggggttgagtggaatgagac
gctcgaacagggaagctgccgtttccagaccccaaagtgttcactgcgac
ctgctctgaacacctcccgggccagcctccaccccgccccttccgcgtcc
agctctgactattccttgccagtgtgctctccactagcagagctccttgg
gtgtatcccggggacaatcaagaagccctctgttgacccagaggacacag
ggaggaggactctgctgctgtggctttccctgtctggccagtgcccctcc
tcgctcctcgttcactgagccagccctgagtgatgcagagctaagccgct
tagcagctgagaaccttcccagagcggctccttctgaggcgccttgtaaa
ttaaagcttgaagcaggaagcaaacccctcaagtgcgatttagtctaagt
gttctcattcattttaattctaaaaatgcaacatcataaaacggcacacc
tggcctgttcacaagctaatgacggcgcttaccgcctagatgaattcggg
ggctggaacagtaatgaaattagcagcattcactgaacgaacgtggcctc
ctcaacaccttccagttaggtggctgttacccctcaatgaggcaagtgcc
atagtctgtcctgactgacttccaggtagcagaatagagacagggttggt
aatttggccaaagtcacacagctagaaaggtgtgtgtctgtgtgtgcgtt
gtgtgtgtgtctgttgtgttgtgtgtcactgggctggtgagatggctcag
tgggtaaaggtgcttgccgccaaacctgcgggtctgagtttgatccccat
aggagagagctgactaagtttgttccctgaacacatacacactgaaatga
aacatttttttttttccaaaaaaggaggcagctgcaatgtgggggtcttg
taagtggggtaccgttcactgagtgggccaaaagacctctccccaagccc
ctctgggatgcttgctgctctggggtggttgccaaaagtcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_168126735_168127962
seq2: B6Ng01-346J03.b_47_1251 (reverse)

seq1  AACGCCAGTGTATGGGATGGCGTGGGTCACATGCAGGGTTGTTCTTCCCT  50
      |||| |||||| ||||||||||||| |||   ||| |||   || | |||
seq2  AACGGCAGTGT-TGGGATGGCGTGGTTCA---GCAAGGT--GTCAT-CCT  43

seq1  CCTCCATCAGTCTCTCTGGAAATCCCCTCACAG-ACACACCCA-GAGGTA  98
      ||| ||||||| ||||| |||    |||||||| ||||| ||| ||||||
seq2  CCT-CATCAGT-TCTCTAGAA--TACCTCACAGAACACAACCAGGAGGTA  89

seq1  CATTGCCATGGTAATTCTAAATCTTGCAGAGT-AGACAACGGAGATTACC  147
      |||   ||| |||||||| ||||||||||||| |||| ||||||||   |
seq2  CAT--GCAT-GTAATTCT-AATCTTGCAGAGTAAGAC-ACGGAGAT--AC  132

seq1  AGCTCAGCCTTCCAGACATAGACTGGGGGTTGGGGTTTCAGACTGCCCTG  197
      ||||||  ||||  ||||| ||||||||  ||||| ||||||||||| ||
seq2  AGCTCAAGCTTCAGGACAT-GACTGGGG--TGGGG-TTCAGACTGCCATG  178

seq1  GTGCCAGCTCCCATCTTTACCTTTTTAGCTGTGTTAGCCTAGGTGGGTTG  247
      ||||||||| ||||| ||| || || |||||||| || ||||||||||||
seq2  GTGCCAGCT-CCATCATTA-CTATTAAGCTGTGTAAG-CTAGGTGGGTTG  225

seq1  CTAGGTTTGCTGAGCCTTGGCTTCTTGATTCCATTGAGCATATCACCTGT  297
      |||||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  CTAGGTTTGCTGAG-CTTGGCTTC-TGATTCCATTGAGCATATCACCTGT  273

seq1  GTTTCCAGCACATCCTTGGAGTTGGGATGACAGGGGAGTCAAGCCGAGTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAGCACATCCTTGGAGTTGGGATGACAGGGGAGTCAAGCCGAGTG  323

seq1  GTTAGTGTAGAGACCTACATGGGTGCGATGGTTATTCCTGGTTTTCAACC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGTAGAGACCTACATGGGTGCGATGGTTATTCCTGGTTTTCAACC  373

seq1  TGATGGTGTCTGGAATCAAGTAAGATATACAACTCTGGGCAGG-AAAGTG  446
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGATGGTGTCTGGAATCAAGTAAGATATACAACTCTGGGCAGGAAAAGTG  423

seq1  TGTGTGGGGGGGGCATTTTCAGAAAGGGTTTTCTAAGTGGGGGAACACCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGGGGGGGCATTTTCAGAAAGGGTTTTCTAAGTGGGGGAACACCT  473

seq1  TCCACACAGTAGGCGGCACCTTCTGGTGGGCCCAGAAACCAAGATCCAGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACAGTAGGCGGCACCTTCTGGTGGGCCCAGAAACCAAGATCCAGG  523

seq1  GAGAAGGCAGCTTGCCTGCTTCCCTGCCTTGCTGGGACTGTCTACTCGGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGCAGCTTGCCTGCTTCCCTGCCTTGCTGGGACTGTCTACTCGGT  573

seq1  TGTCACCCTGGCCATGGCCATCGTGCTTGCTGCTATCAGTGTCTTCAGCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCCTGGCCATGGCCATCGTGCTTGCTGCTATCAGTGTCTTCAGCT  623

seq1  TCCATCATGGACTGAAGGCCAGTGACGCTCCAGGGACCCTCCAGGCACCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCATGGACTGAAGGCCAGTGACGCTCCAGGGACCCTCCAGGCACCC  673

seq1  ATTGCCAGACTGGAACTGCTGAGGGGTCTGGCTTAGTGGATTGAGCAGCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCAGACTGGAACTGCTGAGGGGTCTGGCTTAGTGGATTGAGCAGCT  723

seq1  GCTGGGCAGTCAGGCTCTGTAGCAGGCAGGTGGCCATTGTCAGAAGCCAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCAGTCAGGCTCTGTAGCAGGCAGGTGGCCATTGTCAGAAGCCAG  773

seq1  TCCGGTGAGTTCCTTCTTATATATTCATTCTAAGGTCTCTGTCCCCCTAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGTGAGTTCCTTCTTATATATTCATTCTAAGGTCTCTGTCCCCCTAC  823

seq1  AGAAGATCTGCCCTATCATATCAAGGCTCTCCAAACTCACTGAGCTATGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATCTGCCCTATCATATCAAGGCTCTCCAAACTCACTGAGCTATGG  873

seq1  ATGCTAGCAGAGGGGGTGGGGAGGGAACAAGCAAGTGTTAAGACCAGAAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGCAGAGGGGGTGGGGAGGGAACAAGCAAGTGTTAAGACCAGAAA  923

seq1  GGTCACCCCAGACTCTACCCTACCTGTCCCAGAAGCTGTAAGTTTCCCAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACCCCAGACTCTACCCTACCTGTCCCAGAAGCTGTAAGTTTCCCAG  973

seq1  GAAGTCAGATCCCTCAGCATTGCTCATTTCCCAGGAGGACAATGGTAATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAGATCCCTCAGCATTGCTCATTTCCCAGGAGGACAATGGTAATT  1023

seq1  ATGCTAATCAATGGAAATGAGGTGCCACCGTGATTAATCCTGTCAGCCCG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAATCAATGGAAATGAGGTGCCACCGTGATTAATCCTGTCAGCCCG  1073

seq1  ATTGGATTGGCAGGTGCCTAGGAGGTTTGTAAAGAGCACGCCTGGCTTGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATTGGCAGGTGCCTAGGAGGTTTGTAAAGAGCACGCCTGGCTTGA  1123

seq1  TCCTTGAGGATGCTCAGGGGAGACCAGGAGGGCTTTGACCTAATCAGTGC  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAGGATGCTCAGGGGAGACCAGGAGGGCTTTGACCTAATCAGTGC  1173

seq1  CTTTTGCTGATTATGAATTCAAATCTGAATTC  1228
      ||||||||||||||||||||||||||||||||
seq2  CTTTTGCTGATTATGAATTCAAATCTGAATTC  1205

seq1: chr2_167984783_167985824
seq2: B6Ng01-346J03.g_68_1110

seq1  GAATTCCTAATAATTAACCCGGGATCCCCGGGGGTTGAGTGGAATGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATAATTAACCCGGGATCCCCGGGGGTTGAGTGGAATGAGAC  50

seq1  GCTCGAACAGGGAAGCTGCCGTTTCCAGACCCCAAAGTGTTCACTGCGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGAACAGGGAAGCTGCCGTTTCCAGACCCCAAAGTGTTCACTGCGAC  100

seq1  CTGCTCTGAACACCTCCCGGGCCAGCCTCCACCCCGCCCCTTCCGCGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGAACACCTCCCGGGCCAGCCTCCACCCCGCCCCTTCCGCGTCC  150

seq1  AGCTCTGACTATTCCTTGCCAGTGTGCTCTCCACTAGCAGAGCTCCTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGACTATTCCTTGCCAGTGTGCTCTCCACTAGCAGAGCTCCTTGG  200

seq1  GTGTATCCCGGGGACAATCAAGAAGCCCTCTGTTGACCCAGAGGACACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATCCCGGGGACAATCAAGAAGCCCTCTGTTGACCCAGAGGACACAG  250

seq1  GGAGGAGGACTCTGCTGCTGTGGCTTTCCCTGTCTGGCCAGTGCCCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGACTCTGCTGCTGTGGCTTTCCCTGTCTGGCCAGTGCCCCTCC  300

seq1  TCGCTCCTCGTTCACTGAGCCAGCCCTGAGTGATGCAGAGCTAAGCCGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTCCTCGTTCACTGAGCCAGCCCTGAGTGATGCAGAGCTAAGCCGCT  350

seq1  TAGCAGCTGAGAACCTTCCCAGAGCGGCTCCTTCTGAGGCGCCTTGTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCTGAGAACCTTCCCAGAGCGGCTCCTTCTGAGGCGCCTTGTAAA  400

seq1  TTAAAGCTTGAAGCAGGAAGCAAACCCCTCAAGTGCGATTTAGTCTAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCTTGAAGCAGGAAGCAAACCCCTCAAGTGCGATTTAGTCTAAGT  450

seq1  GTTCTCATTCATTTTAATTCTAAAAATGCAACATCATAAAACGGCACACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCATTCATTTTAATTCTAAAAATGCAACATCATAAAACGGCACACC  500

seq1  TGGCCTGTTCACAAGCTAATGACGGCGCTTACCGCCTAGATGAATTCGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGTTCACAAGCTAATGACGGCGCTTACCGCCTAGATGAATTCGGG  550

seq1  GGCTGGAACAGTAATGAAATTAGCAGCATTCACTGAACGAACGTGGCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAACAGTAATGAAATTAGCAGCATTCACTGAACGAACGTGGCCTC  600

seq1  CTCAACACCTTCCAGTTAGGTGGCTGTTACCCCTCAATGAGGCAAGTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACACCTTCCAGTTAGGTGGCTGTTACCCCTCAATGAGGCAAGTGCC  650

seq1  ATAGTCTGTCCTGACTGACTTCCAGGTAGCAGAATAGAGACAGGGTTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTGTCCTGACTGACTTCCAGGTAGCAGAATAGAGACAGGGTTGGT  700

seq1  AATTTGGCCAAAGTCACACAGCTAGAAAGGTGTGTGTCTGTGTGTGCG-T  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AATTTGGCCAAAGTCACACAGCTAGAAAGGTGTGTGTCTGTGTGTGCGTT  750

seq1  GTGTGTGTGTCTG-TGTG-TGTGTGTCACTGGGCTGGTGAGATGGCTCAG  797
      ||||||||||||| |||| |||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTCTGTTGTGTTGTGTGTCACTGGGCTGGTGAGATGGCTCAG  800

seq1  TGGGTAAAGGTGCTTGCCGCCAAACCTGCGGGTCTGAGTTTGATCCCCAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAAGGTGCTTGCCGCCAAACCTGCGGGTCTGAGTTTGATCCCCAT  850

seq1  AGGAGAGAGCTGACTAAAGTTGTTCCCTGAACACATACACACTGAAATGA  897
      |||||||||||||||||  |||||||||||||||||||||||||||||||
seq2  AGGAGAGAGCTGACTAAGTTTGTTCCCTGAACACATACACACTGAAATGA  900

seq1  AACATTTTTTTTTTCCAAAGAAAGGAGGCAGCTGCAATGTGGGGGTCTTG  947
      |||||||||||||| | || ||||||||||||||||||||||||||||||
seq2  AACATTTTTTTTTTTCCAAAAAAGGAGGCAGCTGCAATGTGGGGGTCTTG  950

seq1  GTAGTGGGGTACGGTTCACTGAGGTGGGCCAAAAGACCTCTCCCCCAGCC  997
        |||||||||| ||||||||| |||||||||||||||||||||| ||||
seq2  TAAGTGGGGTACCGTTCACTGA-GTGGGCCAAAAGACCTCTCCCCAAGCC  999

seq1  CCTCTTGGGATGCTTGCTGCTTCCTGGGTGGGTGCC-AAAGTCAGA  1042
      |||| ||||||||||||||| ||  |||||| |||| |||||||||
seq2  CCTC-TGGGATGCTTGCTGC-TCTGGGGTGGTTGCCAAAAGTCAGA  1043