BAC Information

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BAC

Clone NameB6Ng01-346L06
Chromosome2 (Build37)
Map Location 156,705,338 - 156,819,981
singlet/doubletdoublet
Overlap geneSla2, LOC100043880, Ndrg3, LOC668943
Upstream gene2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik
Downstream geneDsn1, 9830001H06Rik, Gm1332, Samhd1, Rbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh, LOC100043678, Manbal, Src, Blcap, Nnat, Ctnnbl1, LOC100043681, Gm691, 2610036D13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346L06.bB6Ng01-346L06.g
ACCGA128526GA128527
length1,1591,130
definitionB6Ng01-346L06.b B6Ng01-346L06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,705,338 - 156,706,503)(156,818,837 - 156,819,981)
sequence
gaattccctacaccaggatcctccttgggtgagggcctggcagggtggcc
aatgatccaaggcttcctgtcccaaggcctgacctccactgcctctctcc
ctgcagtgtgtcaggctgccagaaaccacccagaggcgtggccacatggg
agccttccaagagtagccctgtgcctcccttctggttttggaagttcctt
ctctcccacagtgcaacctcaggggtccagtgtggtagacttactcagag
atgatggtcagcggctccccgagtctcagagatagtctggcctgttcacc
tgctgggaaactgcccagggccacagctgtgaccttgtgtctttctagag
agaggaatagacatgcttaccctcttagttttctctcaaaatatgaggtg
taattgattttttgccttggctcccctcaagccccccctcccacaggccc
ccttcaggagaagggttagccctagagtctgaagtgtttccagcaggctc
cacagagcttgggagaccccagatagttttgggggctcccatgaaggcct
tcagctcctgtgggtagagaacctagttcctggccatgcctccctatatg
tctccctccagagagtttgagggcagaggcaggggatactgcttagaaga
acagcacctgcctagaacattaaaggccctgggttccatccctagcaccg
tagtaaaccaaaacaaaaaacccactgcaactagaagcctctatcacatg
catctgaggtgggcctctgaagggtggtgggaccacacagcagctctgca
ggcggggtggggggaacgacacctcaggaaggctaacagcttggcctggg
gccccagggaatgacagcatcgtgagctcagcacagacacgcgctggctg
tcagagacagaaagtggggttctgtgaacagaggacaagctccttcttcc
agggtggggttctccccacacacctggctctggttttcttgtcctacgtc
aggcctcgggagaagatgtccacgtgaacgggctctgtaagtctagagca
ctgtgcacaagcaccagagtggattcccagtgcctatacctgggccatga
ttgcaagcccacctcgccctgaaactgcacagaggctacttgctagtctg
accaggaca
gaattcactgatcaccttgtgaaaacccacaccagatctgttcagaggac
ccaggctccagctgtggctacacataagtctttctatacaaaaagataaa
gtggattaagttggttaaataaataattatgcctccatgtcattatttgg
aaattggggtggtcatagaaaagcccagacagttaacacctagttatcaa
agatagaatgatactgtccagagtagaacgaagaaggaaaccagacagct
tccaagaaagcctgtatttgagaatcaaagatgttattactgactgttgt
ttcaagagcagatagactttggaacatgtcttcatctcactttgctcagt
catcctcaaaggtgactgtgccttcctccattttcttacatccgatcaca
tttgtttataagtgttcaaacttgaagatggaaaatgtgtttgatgtctt
caacttaaaaatgactagaacgtttaaaaaacaaagcatgaaaacttgga
cctcagcactaaagaagtagaagctagagtcaggagttgcaggctctggg
ctacacagcagctgctaggccagtggtttgtgttggcctgtctcagtggt
actgagctccaagcatggtttatgcttattcacagctttatgagagaggc
tttgttttttgtgtcatttatagaacattggcaatgtttcctaatttagc
cagtaatatgtactgagggtaaacttgcagttcagtgctttgttaacagt
taaatataaatcatgtgggggctggtgagatggctcagtgggtaagagca
cccgactgctctttccgaaggtccagagttcaaatcccagcaaccacatg
gtggctcacaaccatctgtaacgagatctgacgccctcttctggtgtgtc
tgaagacagctacagtgtactttacatgtataaattaatcttaaaaaaaa
aaaatataaatcatgtaataaatgccttcatactagttgccttcattcag
attggcttgggctgctgggtttgttaattttacccttctagtagacagtt
cactgaagaagatgtcagaactgatatgggccacctacctaatgctacac
catttaataactaaggtggctcatgtgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_156705338_156706503
seq2: B6Ng01-346L06.b_47_1205

seq1  GAATTCCCTACACCAGGATCCTCCTTGGGTGAGGGCCTGGCAGGGTGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTACACCAGGATCCTCCTTGGGTGAGGGCCTGGCAGGGTGGCC  50

seq1  AATGATCCAAGGCTTCCTGTCCCAAGGCCTGACCTCCACTGCCTCTCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCCAAGGCTTCCTGTCCCAAGGCCTGACCTCCACTGCCTCTCTCC  100

seq1  CTGCAGTGTGTCAGGCTGCCAGAAACCACCCAGAGGCGTGGCCACATGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTGTGTCAGGCTGCCAGAAACCACCCAGAGGCGTGGCCACATGGG  150

seq1  AGCCTTCCAAGAGTAGCCCTGTGCCTCCCTTCTGGTTTTGGAAGTTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCCAAGAGTAGCCCTGTGCCTCCCTTCTGGTTTTGGAAGTTCCTT  200

seq1  CTCTCCCACAGTGCAACCTCAGGGGTCCAGTGTGGTAGACTTACTCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCACAGTGCAACCTCAGGGGTCCAGTGTGGTAGACTTACTCAGAG  250

seq1  ATGATGGTCAGCGGCTCCCCGAGTCTCAGAGATAGTCTGGCCTGTTCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGTCAGCGGCTCCCCGAGTCTCAGAGATAGTCTGGCCTGTTCACC  300

seq1  TGCTGGGAAACTGCCCAGGGCCACAGCTGTGACCTTGTGTCTTTCTAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGAAACTGCCCAGGGCCACAGCTGTGACCTTGTGTCTTTCTAGAG  350

seq1  AGAGGAATAGACATGCTTACCCTCTTAGTTTTCTCTCAAAATATGAGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAATAGACATGCTTACCCTCTTAGTTTTCTCTCAAAATATGAGGTG  400

seq1  TAATTGATTTTTTGCCTTGGCTCCCCTCAAGCCCCCCCTCCCACAGGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGATTTTTTGCCTTGGCTCCCCTCAAGCCCCCCCTCCCACAGGCCC  450

seq1  CCTTCAGGAGAAGGGTTAGCCCTAGAGTCTGAAGTGTTTCCAGCAGGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGGAGAAGGGTTAGCCCTAGAGTCTGAAGTGTTTCCAGCAGGCTC  500

seq1  CACAGAGCTTGGGAGACCCCAGATAGTTTTGGGGGCTCCCATGAAGGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGCTTGGGAGACCCCAGATAGTTTTGGGGGCTCCCATGAAGGCCT  550

seq1  TCAGCTCCTGTGGGTAGAGAACCTAGTTCCTGGCCATGCCTCCCTATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCCTGTGGGTAGAGAACCTAGTTCCTGGCCATGCCTCCCTATATG  600

seq1  TCTCCCTCCAGAGAGTTTGAGGGCAGAGGCAGGGGATACTGCTTAGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCCAGAGAGTTTGAGGGCAGAGGCAGGGGATACTGCTTAGAAGA  650

seq1  ACAGCACCTGCCTAGAACATTAAAGGCCCTGGGTTCCATCCCTAGCACCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACCTGCCTAGAACATTAAAGGCCCTGGGTTCCATCCCTAGCACCG  700

seq1  TAGTAAACCAAAACAAAAAACCCACTGCAACTAGAAGCCTCTATCACATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAACCAAAACAAAAAACCCACTGCAACTAGAAGCCTCTATCACATG  750

seq1  CATCTGAGGTGGGCCTCTGAAGGGTGGTGGGACCACACAGCAGCTCTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAGGTGGGCCTCTGAAGGGTGGTGGGACCACACAGCAGCTCTGCA  800

seq1  GGCGGGGTGGGGGGAACGACACCTCAGGAAGGCTAACAGCTTGGCCTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGGGTGGGGGGAACGACACCTCAGGAAGGCTAACAGCTTGGCCTGGG  850

seq1  GCCCCA-GGAATGACAGCATCGTGAGCTCCAGCACAGACACGCGCTGGCT  899
      |||||| ||||||||||||||||||||| |||||||||||||||||||||
seq2  GCCCCAGGGAATGACAGCATCGTGAGCT-CAGCACAGACACGCGCTGGCT  899

seq1  GTCAGGAGACAGAAAGTGGGG-TCTGTGAACAGAGGACAAGCTCC-TCTT  947
      |||| |||||||||||||||| ||||||||||||||||||||||| ||||
seq2  GTCA-GAGACAGAAAGTGGGGTTCTGTGAACAGAGGACAAGCTCCTTCTT  948

seq1  CCAGGGTGGGGTTCTTCCCCACACACCTGGCTCTGGTTTTCTTGTTCCTA  997
      |||||||||||||| ||||||||||||||||||||||||||||| |||||
seq2  CCAGGGTGGGGTTC-TCCCCACACACCTGGCTCTGGTTTTCTTG-TCCTA  996

seq1  CGTCAGGCCTCGGGAG-AGATGTCCACGTGAACGGGCTCTGTAAGTCTAG  1046
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CGTCAGGCCTCGGGAGAAGATGTCCACGTGAACGGGCTCTGTAAGTCTAG  1046

seq1  AGCACTGTGCACAGGCA-CAGAGTGGATTCCCAGTGGCCTATACCTGGGC  1095
      ||||||||||||| ||| ||||||||||||||||| ||||||||||||||
seq2  AGCACTGTGCACAAGCACCAGAGTGGATTCCCAGT-GCCTATACCTGGGC  1095

seq1  CAATGAGTGAAGGCCCACGCTGCCCCTGAGAAGTGCCACCAGAGGCTACT  1145
      | |||| || | |||||| ||  |||||| || |||   |||||||||| 
seq2  C-ATGATTGCAAGCCCAC-CTCGCCCTGA-AACTGC--ACAGAGGCTAC-  1139

seq1  ATTGCAGGTCTGACCAGGACA  1166
       ||||  ||||||||||||||
seq2  -TTGCTAGTCTGACCAGGACA  1159

seq1: chr2_156818837_156819981
seq2: B6Ng01-346L06.g_71_1200 (reverse)

seq1  CCTCAACATGAGCAACTTATGTTATTAAAGGGTTGTAGCATTAGGTAGGT  50
      |||| |||||||| || |  ||||||||| || |||||||||||||||| 
seq2  CCTC-ACATGAGCCACCTTAGTTATTAAATGG-TGTAGCATTAGGTAGG-  47

seq1  TGGCCTATTATCAGTTTCTGCCATCTTCCTTCAGTGAACTGTCTACCTAG  100
      ||||| | |||||| ||||| |||||| ||||||||||||||||| ||||
seq2  TGGCCCA-TATCAG-TTCTGACATCTT-CTTCAGTGAACTGTCTA-CTAG  93

seq1  AAGGGTAAAATTAAACAAACCCAGGCCAGGCCCAAGCCAATCTGAATGAA  150
      |||||||||||| |||||||||||  || |||||||||||||||||||||
seq2  AAGGGTAAAATT-AACAAACCCAG--CA-GCCCAAGCCAATCTGAATGAA  139

seq1  GGCAAAACTAGTATTGAAGGCATTTTATTACATGATTTATATTTTTTTTT  200
      |||  |||||||| |||||||| |||||||||||||||||| ||||||||
seq2  GGC--AACTAGTA-TGAAGGCA-TTTATTACATGATTTATA-TTTTTTTT  184

seq1  TTTTAAGATTTATTTATTACATGT-AAGTACACTGTAGCTGTCTTCAGAC  249
      |||||||||| ||||| ||||||| |||||||||||||||||||||||||
seq2  TTTTAAGATTAATTTA-TACATGTAAAGTACACTGTAGCTGTCTTCAGAC  233

seq1  ACACCAGAAGAGGGCGTCAGATCTCGTTACAGATGGTTGTGAGCCACCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGAAGAGGGCGTCAGATCTCGTTACAGATGGTTGTGAGCCACCAT  283

seq1  GTGGTTGCTGGGATTTGAACTCTGGACCTTCGG-AAGAGCAGTCGGGTGC  348
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAAGAGCAGTCGGGTGC  333

seq1  TCTTACCCACTGAGCCATCTCACCAGCCCCCACATGATTTATATTTAACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCCACTGAGCCATCTCACCAGCCCCCACATGATTTATATTTAACT  383

seq1  GTTAACAAAGCACTGAACTGCAAGTTTACCCTCAGTACATATTACTGGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACAAAGCACTGAACTGCAAGTTTACCCTCAGTACATATTACTGGCT  433

seq1  AAATTAGGAAACATTGCCAATGTTCTATAAATGACACAAAAAACAAAGCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGGAAACATTGCCAATGTTCTATAAATGACACAAAAAACAAAGCC  483

seq1  TCTCTCATAAAGCTGTGAATAAGCATAAACCATGCTTGGAGCTCAGTACC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCATAAAGCTGTGAATAAGCATAAACCATGCTTGGAGCTCAGTACC  533

seq1  ACTGAGACAGGCCAACACAAACCACTGGCCTAGCAGCTGCTGTGTAGCCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGACAGGCCAACACAAACCACTGGCCTAGCAGCTGCTGTGTAGCCC  583

seq1  AGAGCCTGCAACTCCTGACTCTAGCTTCTACTTCTTTAGTGCTGAGGTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTGCAACTCCTGACTCTAGCTTCTACTTCTTTAGTGCTGAGGTCC  633

seq1  AAGTTTTCATGCTTTGTTTTTTAAACGTTCTAGTCATTTTTAAGTTGAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTCATGCTTTGTTTTTTAAACGTTCTAGTCATTTTTAAGTTGAAG  683

seq1  ACATCAAACACATTTTCCATCTTCAAGTTTGAACACTTATAAACAAATGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAACACATTTTCCATCTTCAAGTTTGAACACTTATAAACAAATGT  733

seq1  GATCGGATGTAAGAAAATGGAGGAAGGCACAGTCACCTTTGAGGATGACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGGATGTAAGAAAATGGAGGAAGGCACAGTCACCTTTGAGGATGACT  783

seq1  GAGCAAAGTGAGATGAAGACATGTTCCAAAGTCTATCTGCTCTTGAAACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAGTGAGATGAAGACATGTTCCAAAGTCTATCTGCTCTTGAAACA  833

seq1  ACAGTCAGTAATAACATCTTTGATTCTCAAATACAGGCTTTCTTGGAAGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAGTAATAACATCTTTGATTCTCAAATACAGGCTTTCTTGGAAGC  883

seq1  TGTCTGGTTTCCTTCTTCGTTCTACTCTGGACAGTATCATTCTATCTTTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGTTTCCTTCTTCGTTCTACTCTGGACAGTATCATTCTATCTTTG  933

seq1  ATAACTAGGTGTTAACTGTCTGGGCTTTTCTATGACCACCCCAATTTCCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTAGGTGTTAACTGTCTGGGCTTTTCTATGACCACCCCAATTTCCA  983

seq1  AATAATGACATGGAGGCATAATTATTTATTTAACCAACTTAATCCACTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGACATGGAGGCATAATTATTTATTTAACCAACTTAATCCACTTT  1033

seq1  ATCTTTTTGTATAGAAAGACTTATGTGTAGCCACAGCTGGAGCCTGGGTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTGTATAGAAAGACTTATGTGTAGCCACAGCTGGAGCCTGGGTC  1083

seq1  CTCTGAACAGATCTGGTGTGGGTTTTCACAAGGTGATCAGTGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAACAGATCTGGTGTGGGTTTTCACAAGGTGATCAGTGAATTC  1130