BAC Information

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BAC

Clone NameB6Ng01-346M23
Chromosome2 (Build37)
Map Location 112,965,511 - 112,966,655
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3
Downstream gene4930563P21Rik, Fmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346M23.bB6Ng01-346M23.g
ACCGA128604GA128605
length1,1371,213
definitionB6Ng01-346M23.b B6Ng01-346M23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatagtaactcatctatcttttctgtctgatattcttactcgcca
agaaagtgtttttaaagtacattataacagagttctgcttctgatgctgc
aaaccagacgcttctaatgcttttagaagctctgcacaagatcttggatt
ctttgcttctgcatctgctattttttcttttctttttcaacataatattt
ttattgattatttgggaatttcccataatgcacactgatcacatttattt
ccctatctttgcacatctatcttccctcccttgtgaccccctcaaaagaa
acaaatcaccaagtctaatttgtgttgcccatatactcactagagcgtac
agagtcaaacttccagtagccagacccttaagaaaaacttagccccatca
ccacacacacacacacacacacacacacacacagagagagagagagagag
agagagagagagagagagagactacaccctcaaaaagaaacagtatatgc
tactttttaacaataatgaaaagaattgttctttctctgttagaaattta
gttctgattgagggcttggtgttagttaccccactaaagctccattatca
gacgaacttggtagcatgagggaagtgaaaaccagttgactctaagatgc
tgctatatataatattattgtccaaacaataaagttgcttgtagggggtg
gggcatcctagttgtgaggtaataaggaaaggttcttcttgtgttaagga
aatatgaataattccacacagataattacaacagactatcctgtagccta
tttcctcaagtaacaagagtctgaacattttctatttagaaatactctat
gggtaccaatactcacaaaattatcaaagtatattaaaaaaaatcaatca
aaagatactctctgggtcagattctagaatattaatagcatttaaaaagt
tggtttttcctagatacccaagatacatttccaaaacacaaaaaatcaga
aggaagaccaacacaaggatgcttcattcccccttagataggaataaata
ccccatgagggagttgcagaagacaaagttggagcttaagacgaaaggat
gaacatccaagacctgtccaatcgagggtccatctgt
gaattcagactcccaggaactgagatttaaaagcccgatgcaggaacata
tgcctacaatctcagtgctagggtttagggcagaaacagctcaccaattg
gtgagcttcaggttcagtgagagaccctgtttcaaaaagtaaagtggaat
agatggagagatggcttagcaattaatagcattgaatgttcttgaagaaa
agcgtcaactctgagcacctatagggccgctaccttctctaactccagtc
ccaagggatctgatgccctcttctggcctccatgagtactgcatgcacat
gacccacagacgccttactccctccgaggttgtttctgccttgactatat
cagtgatagagtgtgacctgagagtataagctaaaattatcctttcctcc
cccaagtttcttcttatcatgctgttttataagaactttagaaaccttaa
ttcactgacaaaaacattaaaggagaacaggtttacattgtcttagagtt
catcatggcggagagacatggcgacgggaagggatggcagggaggcgaag
ctggtagccggttgaccaccatcgacatttaggaagtagagagaggatgg
agagcagggagtgaagccaggctatgaaacctcaaagccgcctcccagag
atatacttcctccatcaaggctccacttcctacagattccataacctccc
caaacagtgcagccagctgaggaccaagtgctcaacacatgagactacag
aagatatttcatactcagaaccatagcttcctgtcctggccctctaagca
tgggaattataagcatgcgtagtcacacccaccagcattcactcgacttc
ttgggaactgaactccggtcttcatgcatatgccgcaagcacttggggca
ctttatctactaagtcaccttcccaccctgtcactgttcatttaaagcag
tgttcttctgcttctgtaattcttctggagtcagcttcctccttttgggg
acagcaaaaacctttggtgcttttgcaacatggaccttcagcgcatctta
taggtccagattccaactggggtgcttccttacaagtgatgggcttactt
tcacttcatatgtcctggagccagtgctctggcagtcaggtcttatctta
accagccatagaagatgcagatattgttctgaagataataattctttcat
gccgcagaaagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_112965511_112966655
seq2: B6Ng01-346M23.b_44_1180

seq1  GAATTCATAGTAACTCATCTATCTTTTCTGTCTGATATTCTTACTCGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGTAACTCATCTATCTTTTCTGTCTGATATTCTTACTCGCCA  50

seq1  AGAAAGTGTTTTTAAAGTACATTATAACAGAGTTCTGCTTCTGATGCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTGTTTTTAAAGTACATTATAACAGAGTTCTGCTTCTGATGCTGC  100

seq1  AAACCAGACGCTTCTAATGCTTTTAGAAGCTCTGCACAAGATCTTGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGACGCTTCTAATGCTTTTAGAAGCTCTGCACAAGATCTTGGATT  150

seq1  CTTTGCTTCTGCATCTGCTATTTTTTCTTTTCTTTTTCAACATAATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTCTGCATCTGCTATTTTTTCTTTTCTTTTTCAACATAATATTT  200

seq1  TTATTGATTATTTGGGAATTTCCCATAATGCACACTGATCACATTTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGATTATTTGGGAATTTCCCATAATGCACACTGATCACATTTATTT  250

seq1  CCCTATCTTTGCACATCTATCTTCCCTCCCTTGTGACCCCCTCAAAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATCTTTGCACATCTATCTTCCCTCCCTTGTGACCCCCTCAAAAGAA  300

seq1  ACAAATCACCAAGTCTAATTTGTGTTGCCCATATACTCACTAGAGCGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCACCAAGTCTAATTTGTGTTGCCCATATACTCACTAGAGCGTAC  350

seq1  AGAGTCAAACTTCCAGTAGCCAGACCCTTAAGAAAAACTTAGCCCCATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAAACTTCCAGTAGCCAGACCCTTAAGAAAAACTTAGCCCCATCA  400

seq1  CCACACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAG  450

seq1  AGAGAGAGAGAGAGAGAGAGACTACACCCTCAAAAAGAAACAGTATATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGACTACACCCTCAAAAAGAAACAGTATATGC  500

seq1  TACTTTTTAACAATAATGAAAAGAATTGTTCTTTCTCTGTTAGAAATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTAACAATAATGAAAAGAATTGTTCTTTCTCTGTTAGAAATTTA  550

seq1  GTTCTGATTGAGGGCTTGGTGTTAGTTACCCCACTAAAGCTCCATTATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGATTGAGGGCTTGGTGTTAGTTACCCCACTAAAGCTCCATTATCA  600

seq1  GACGAACTTGGTAGCATGAGGGAAGTGAAAACCAGTTGACTCTAAGATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAACTTGGTAGCATGAGGGAAGTGAAAACCAGTTGACTCTAAGATGC  650

seq1  TGCTATATATAATATTATTGTCCAAACAATAAAGTTGCTTGTAGGGGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATATATAATATTATTGTCCAAACAATAAAGTTGCTTGTAGGGGGTG  700

seq1  GGGCATCCTAGTTGTGAGGTAATAAGGAAAGGTTCTTCTTGTGTTAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATCCTAGTTGTGAGGTAATAAGGAAAGGTTCTTCTTGTGTTAAGGA  750

seq1  AATATGAATAATTCCACACAGATAATTACAACAGACTATCCTGTAGCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAATAATTCCACACAGATAATTACAACAGACTATCCTGTAGCCTA  800

seq1  TTTCCTCAAGTAACAAGAGTCTGAACATTTTCTATTTAGAAATACTCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCAAGTAACAAGAGTCTGAACATTTTCTATTTAGAAATACTCTAT  850

seq1  GGGTACCAATACTCACAAAATTATCAAAGTATATT-AAAAAAATCAATCA  899
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGGTACCAATACTCACAAAATTATCAAAGTATATTAAAAAAAATCAATCA  900

seq1  AAAGATACTCTCTGGGTCAGATTCTAGAATATTAATAGCATTTAAAAAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATACTCTCTGGGTCAGATTCTAGAATATTAATAGCATTTAAAAAGT  950

seq1  TGGTTTTTCCTAGAATACCCAAGATACAATTTCCAAAACACAAAAAAATC  999
      ||||||||||||| ||||||||||||| ||||||||||||| ||||||||
seq2  TGGTTTTTCCTAG-ATACCCAAGATAC-ATTTCCAAAACAC-AAAAAATC  997

seq1  AAGAAGGAAGACCAACACAAGGATGCTTCATTCCCCCCTAGAATAGGGAA  1049
       |||||||||||||||||||||||||||||||||||| ||| ||| ||||
seq2  -AGAAGGAAGACCAACACAAGGATGCTTCATTCCCCCTTAG-ATA-GGAA  1044

seq1  TAAAATACCCATGGAAGGAGTTGCAG-AGACAAAGTTTGGAGC-TAAGAC  1097
      | ||||||||   || |||||||||| |||||||| ||||||| ||||||
seq2  T-AAATACCCCATGAGGGAGTTGCAGAAGACAAAG-TTGGAGCTTAAGAC  1092

seq1  GAAAGGATGGACCATCCAGAGA-CTGCCCCACCCAGGGGTCCATTCTGT  1145
      |||||||| || |||||| ||| ||| || | | | ||||||| |||||
seq2  GAAAGGAT-GAACATCCA-AGACCTGTCCAATCGA-GGGTCCA-TCTGT  1137