BAC Information

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BAC

Clone NameB6Ng01-347G04
Chromosome2 (Build37)
Map Location 95,642,539 - 95,789,418
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042843
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347G04.bB6Ng01-347G04.g
ACCGA129001GA129002
length1,2191,194
definitionB6Ng01-347G04.b B6Ng01-347G04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,642,539 - 95,643,772)(95,788,209 - 95,789,418)
sequence
gaattcatggtaagaaatatagcttctctctgaaattctaatcttaggta
gtagttgaagtgaggctgtttttaatcttttgactttactttttgtctca
gggtgctctgtgtttctagtttccagcagagatatacatgtttttccttt
gaaattgcatctcacataacaccaaaatcaccaagattaatcaatgaagg
cctagaaagtaagagagtatacacttatctgtgctctgttttctctgtgc
aacacacacatatgtatatatatatagttttatgagtttcaaaactatgc
catatgagaagctgacatttttattcagagaatcttcaccttagggttta
aacaccttcttcacacagaggtttgctcacagttgacacagagagctaat
tagagctaataatggaattataaaaatgagtttacagaaaattaatattg
ttgcagattcccttacgatttcatgcagtttttaagacaagtggaagtag
aggttagcacactgttagaacaccagacaacagaactttaactattggta
atttgggatttttacaaatgacaaatcacattctggtaatttcttaagta
ttcaaatatgttttcttatcacagcaaatgaaatttattgactttgaatg
aatatgtcttttctgaatcccctagaatagtgatattagatatcagcagt
tgagagacatagatggggcattataaagttgattatgcctgtaacatgca
ttggttctcttctgcttttattattagttttgttaatcccctgtctatct
gggacatctttagtgacagttgctacccatctctaaatgcaatgcatgta
gtagtggtaacatttttattaattgggttcagcttttgaaaattttatgc
acacatataatgcattctgataattttaactcctccttttatgtacctcc
tgcccattatctacttttcccatgaatttctttcccaatcatcttggtgg
ttttgtgagcttctgaaattactcttgggaatacctctgtgactttggtt
tagagtagccattggaggctagtgcatcacagtggttactcagaataatg
aaatgaatccccctttcagaattattcagaagcatatgctcatgagtatg
gttagacttgattggacattggcaaggacagtcatttgtgagtccaggca
acacggtgtgaatatattt

gaattcaaaaataatatgtttaatgtgaagagtgagagagaattcagagg
tcagagccccttttctcagaaggtatgcacttcttaaacaagcaataagt
gtgccctgcaaacaaagtgcaatgcttgcaaagaggcaaacaattaaaaa
gtgttctcacatgtatttttcctctagaggaccataagctattgattgca
ggcacaagataagaaaatgaaatctcccctaatggtgagacgccaggatt
atgtgcatgaaaagtttccttcacaagcttatcaggcaacaaaaaaattg
aatgtgttttgcactgaaatcagacaaatactttcaggggtgtacattcc
atgccgcacagaggaaaggccaataaaagcaattaccaggcagttgagct
gctcattatgtgatcaacataagcaaataatatggtctgggatcaatcac
ctgcttctcctggaagagcaggaagtttggtgcatgaagtaggagactct
gatgcatcagtactgtgctctcccagtcagcccctgaagaggctatcagt
ttctgtgatacacacacctatcgactcaggggctgaaaaagcgccctcaa
ttgtcattcaattggtagatagaggaaagggaagagtaagagctaggctg
tctcagtagagcaccctaatgtccttgaagttgggaaagctcagaaaatt
tctccaggagctgaatccaaaagagtaagaaatgagtctagaaactagtt
agtacatgaaaacaacacagcactatttgaggcaaagaagggggctgtga
aaatcaggaagaggcatagagaggtagtagagaactgacaacgtatgact
tgcaataatagttatttgaacagtaataacatataataacaagcaaacaa
tatctaataggcatctacatgtcagtgtgagtgcttattgtactctgtta
aaggacccttaagcagacatttccataactcaatcatttctacagaaaat
acatgtagactctctgtttatagacccattgctgggcagacagatatcat
tcactcccacaatctctgtgtagaaggtgggcacaagagggctatagtct
cagagacagcaccctcagaatgtataatgtttgatccgaatagtgcttct
tatggcatgccatgacctataatcaggccacgcatattctaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_95642539_95643772
seq2: B6Ng01-347G04.b_44_1262

seq1  GAATTCATGGTAAGAAATATAGCTTCTCTCTGAAATTCTAATCTTAGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGTAAGAAATATAGCTTCTCTCTGAAATTCTAATCTTAGGTA  50

seq1  GTAGTTGAAGTGAGGCTGTTTTTAATCTTTTGACTTTACTTTTTGTCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTGAAGTGAGGCTGTTTTTAATCTTTTGACTTTACTTTTTGTCTCA  100

seq1  GGGTGCTCTGTGTTTCTAGTTTCCAGCAGAGATATACATGTTTTTCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTCTGTGTTTCTAGTTTCCAGCAGAGATATACATGTTTTTCCTTT  150

seq1  GAAATTGCATCTCACATAACACCAAAATCACCAAGATTAATCAATGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGCATCTCACATAACACCAAAATCACCAAGATTAATCAATGAAGG  200

seq1  CCTAGAAAGTAAGAGAGTATACACTTATCTGTGCTCTGTTTTCTCTGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAAGTAAGAGAGTATACACTTATCTGTGCTCTGTTTTCTCTGTGC  250

seq1  AACACACACATATGTATATATATATAGTTTTATGAGTTTCAAAACTATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACACATATGTATATATATATAGTTTTATGAGTTTCAAAACTATGC  300

seq1  CATATGAGAAGCTGACATTTTTATTCAGAGAATCTTCACCTTAGGGTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGAGAAGCTGACATTTTTATTCAGAGAATCTTCACCTTAGGGTTTA  350

seq1  AACACCTTCTTCACACAGAGGTTTGCTCACAGTTGACACAGAGAGCTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTTCTTCACACAGAGGTTTGCTCACAGTTGACACAGAGAGCTAAT  400

seq1  TAGAGCTAATAATGGAATTATAAAAATGAGTTTACAGAAAATTAATATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTAATAATGGAATTATAAAAATGAGTTTACAGAAAATTAATATTG  450

seq1  TTGCAGATTCCCTTACGATTTCATGCAGTTTTTAAGACAAGTGGAAGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGATTCCCTTACGATTTCATGCAGTTTTTAAGACAAGTGGAAGTAG  500

seq1  AGGTTAGCACACTGTTAGAACACCAGACAACAGAACTTTAACTATTGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGCACACTGTTAGAACACCAGACAACAGAACTTTAACTATTGGTA  550

seq1  ATTTGGGATTTTTACAAATGACAAATCACATTCTGGTAATTTCTTAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGATTTTTACAAATGACAAATCACATTCTGGTAATTTCTTAAGTA  600

seq1  TTCAAATATGTTTTCTTATCACAGCAAATGAAATTTATTGACTTTGAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATATGTTTTCTTATCACAGCAAATGAAATTTATTGACTTTGAATG  650

seq1  AATATGTCTTTTCTGAATCCCCTAGAATAGTGATATTAGATATCAGCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTCTTTTCTGAATCCCCTAGAATAGTGATATTAGATATCAGCAGT  700

seq1  TGAGAGACATAGATGGGGCATTATAAAGTTGATTATGCCTGTAACATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGACATAGATGGGGCATTATAAAGTTGATTATGCCTGTAACATGCA  750

seq1  TTGGTTCTCTTCTGCTTTTATTATTAGTTTTGTTAATCCCCTGTCTATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCTCTTCTGCTTTTATTATTAGTTTTGTTAATCCCCTGTCTATCT  800

seq1  GGGACATCTTTAGTGACAGTTGCTACCCATCTCTAAATGCAATGCATGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATCTTTAGTGACAGTTGCTACCCATCTCTAAATGCAATGCATGTA  850

seq1  GTAGTGGTAACATTTTTATTAATTGGGTTCAGCTTTTGAAAATTTTATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGGTAACATTTTTATTAATTGGGTTCAGCTTTTGAAAATTTTATGC  900

seq1  ACACATATAATGCATTCTGATAATTTTAACTCCTCCTTTTATGTACCTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATAATGCATTCTGATAATTTTAACTCCTCCTTTTATGTACCTCC  950

seq1  TGCCCATTATCTACTTTTCCCATGAATTTCTTTCCCAATCATCTTGGTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATTATCTACTTTTCCCATGAATTTCTTTCCCAATCATCTTGGTGG  1000

seq1  TTTTTGTGAGCTTCTGAAATTACTCT--GGGATACCTCTGTGACTTTTGG  1048
       |||||||||||||||||||||||||  || ||||||||||||| |||||
seq2  -TTTTGTGAGCTTCTGAAATTACTCTTGGGAATACCTCTGTGAC-TTTGG  1048

seq1  TTTAGAAGTAGCCATTGGAGGCTAGTGCAATCCACCAGTGGTTACTCAGA  1098
      ||||| |||||||||||||||||||||| |||   |||||||||||||||
seq2  TTTAG-AGTAGCCATTGGAGGCTAGTGC-ATC--ACAGTGGTTACTCAGA  1094

seq1  TAAATGAAATGATCCCCCCTTCCAGAATTTATCAGAAAGCAATATGGCTC  1148
        ||||||||||  ||||||| |||||||  |||| |||| |||| ||||
seq2  ATAATGAAATGAATCCCCCTTTCAGAATTATTCAG-AAGC-ATAT-GCTC  1141

seq1  ATTGAGTATGGGTAGGACCTTTTGAATATTGACTATTGACAGGGACAGTC  1198
      | ||||||||| || |||   |||   ||||   |||| || ||||||||
seq2  A-TGAGTATGGTTA-GAC---TTG---ATTGGACATTGGCAAGGACAGTC  1183

seq1  ATTTGTGAGTCCAGTGCAA-ACACTGTGAATTTATTT  1234
      |||||||||||||| |||| ||  ||||||| |||||
seq2  ATTTGTGAGTCCAG-GCAACACGGTGTGAATATATTT  1219


seq1: chr2_95788209_95789418
seq2: B6Ng01-347G04.g_65_1258 (reverse)

seq1  TCTTAAAATATGCCGTGGCCTGATTTATGAGGTCAT-GCATGACAATAAA  49
      ||||| |||||| |||||||||| |||| ||||||| ||||| ||   ||
seq2  TCTTAGAATATG-CGTGGCCTGA-TTAT-AGGTCATGGCATGCCA--TAA  45

seq1  GAAGACACTATTCTGAATTCCAAAACATTATACATTTCTGA-GGTGCCTT  98
      |||| |||||||| ||  ||  |||||||||||| |||||| |||||  |
seq2  GAAG-CACTATTCGGA--TC--AAACATTATACA-TTCTGAGGGTGC--T  87

seq1  GTCTCTGAGAACTATACCCCTCTTGTGCCCACC-TCTACCACAGAGATTG  147
      ||||||||| |||||| |||||||||||||||| |||| |||||||||||
seq2  GTCTCTGAG-ACTATAGCCCTCTTGTGCCCACCTTCTA-CACAGAGATTG  135

seq1  TGGGAGTGAATGATATCTGTCCTTGCCCAGCAATTGGGTCTAATAAACAG  197
      |||||||||||||||||||||  |||||||||| ||||||| ||||||||
seq2  TGGGAGTGAATGATATCTGTC--TGCCCAGCAA-TGGGTCT-ATAAACAG  181

seq1  AGAGTCTACATGTATTTTCTGTAGAAATGATTGAGTTATGGAAATGTCTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTACATGTATTTTCTGTAGAAATGATTGAGTTATGGAAATGTCTG  231

seq1  CTTAAGGGTCCTTTAACAGAGTACAATAAGCACTCACACTGACATGTAGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGGGTCCTTTAACAGAGTACAATAAGCACTCACACTGACATGTAGA  281

seq1  TGCCTATTAGATATTGTTTGCTTGTTATTATATGTTATTACTGTTCAAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATTAGATATTGTTTGCTTGTTATTATATGTTATTACTGTTCAAAT  331

seq1  AACTATTATTGCAAGTCATACGTTGTCAGTTCTCTACTACCTCTCTATGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTATTGCAAGTCATACGTTGTCAGTTCTCTACTACCTCTCTATGC  381

seq1  CTCTTCCTGATTTTCACAGCCCCCTTCTTTGCCTCAAATAGTGCTGTGTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTGATTTTCACAGCCCCCTTCTTTGCCTCAAATAGTGCTGTGTT  431

seq1  GTTTTCATGTACTAACTAGTTTCTAGACTCATTTCTTACTCTTTTGGATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCATGTACTAACTAGTTTCTAGACTCATTTCTTACTCTTTTGGATT  481

seq1  CAGCTCCTGGAGAAATTTTCTGAGCTTTCCCAACTTCAAGGACATTAGGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCTGGAGAAATTTTCTGAGCTTTCCCAACTTCAAGGACATTAGGG  531

seq1  TGCTCTACTGAGACAGCCTAGCTCTTACTCTTCCCTTTCCTCTATCTACC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTACTGAGACAGCCTAGCTCTTACTCTTCCCTTTCCTCTATCTACC  581

seq1  AATTGAATGACAATTGAGGGCGCTTTTTCAGCCCCTGAGTCGATAGGTGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAATGACAATTGAGGGCGCTTTTTCAGCCCCTGAGTCGATAGGTGT  631

seq1  GTGTATCACAGAAACTGATAGCCTCTTCAGGGGCTGACTGGGAGAGCACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATCACAGAAACTGATAGCCTCTTCAGGGGCTGACTGGGAGAGCACA  681

seq1  GTACTGATGCATCAGAGTCTCCTACTTCATGCACCAAACTTCCTGCTCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGATGCATCAGAGTCTCCTACTTCATGCACCAAACTTCCTGCTCTT  731

seq1  CCAGGAGAAGCAGGTGATTGATCCCAGACCATATTATTTGCTTATGTTGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGAAGCAGGTGATTGATCCCAGACCATATTATTTGCTTATGTTGA  781

seq1  TCACATAATGAGCAGCTCAACTGCCTGGTAATTGCTTTTATTGGCCTTTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAATGAGCAGCTCAACTGCCTGGTAATTGCTTTTATTGGCCTTTC  831

seq1  CTCTGTGCGGCATGGAATGTACACCCCTGAAAGTATTTGTCTGATTTCAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGCGGCATGGAATGTACACCCCTGAAAGTATTTGTCTGATTTCAG  881

seq1  TGCAAAACACATTCAATTTTTTTGTTGCCTGATAAGCTTGTGAAGGAAAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAACACATTCAATTTTTTTGTTGCCTGATAAGCTTGTGAAGGAAAC  931

seq1  TTTTCATGCACATAATCCTGGCGTCTCACCATTAGGGGAGATTTCATTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGCACATAATCCTGGCGTCTCACCATTAGGGGAGATTTCATTTT  981

seq1  CTTATCTTGTGCCTGCAATCAATAGCTTATGGTCCTCTAGAGGAAAAATA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTTGTGCCTGCAATCAATAGCTTATGGTCCTCTAGAGGAAAAATA  1031

seq1  CATGTGAGAACACTTTTTAATTGTTTGCCTCTTTGCAAGCATTGCACTTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGAGAACACTTTTTAATTGTTTGCCTCTTTGCAAGCATTGCACTTT  1081

seq1  GTTTGCAGGGCACACTTATTGCTTGTTTAAGAAGTGCATACCTTCTGAGA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAGGGCACACTTATTGCTTGTTTAAGAAGTGCATACCTTCTGAGA  1131

seq1  AAAGGGGCTCTGACCTCTGAATTCTCTCTCACTCTTCACATTAAACATAT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGCTCTGACCTCTGAATTCTCTCTCACTCTTCACATTAAACATAT  1181

seq1  TATTTTTGAATTC  1210
      |||||||||||||
seq2  TATTTTTGAATTC  1194


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