BAC Information

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BAC

Clone NameB6Ng01-347H05
Chromosome2 (Build37)
Map Location 77,168,374 - 77,295,880
singlet/doubletdoublet
Overlap geneLOC667906, Zfp533
Upstream genePde11a, Cyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn, 2610301F02Rik, Sestd1, LOC623706
Downstream geneBC003993, LOC667920, OTTMUSG00000016703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347H05.bB6Ng01-347H05.g
ACCGA129047GA129048
length1,2541,169
definitionB6Ng01-347H05.b B6Ng01-347H05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,168,374 - 77,169,627)(77,294,696 - 77,295,880)
sequence
gaattccttagttggctacagttggttgtctaaggtcgaggtccagagag
agcaacatcatcttaattaaatgttagaactgtgtcttgtccctcaacaa
ggattcatcgctcatagaaattgatgtgttctccattgttgccagcaaac
ctaaaactttctcccttctaacatgaggcaaatgaacacattacgaaacc
atatcagaggaatcgctctgtgagattataaagtccacaatttatagtct
gcttctaggagctgatcacttatgacaggcagcatctattttaagcaccg
taggtaacgaaacacattctggacatcaaagataacaaatactgcatttc
tgagtctattgatttaaaaaaaatgcccaaagaattcatgaagcagatgc
atacaaaagcttaataaaaattgaagcctacatagttttcttgtgatttc
tgagttcacatcttgatttataaagttcctagattaaatctttgttcatt
tctgtcagatgaggtataaaataagcccaggactagaattcctactgaga
gggctttttccttcatgaaataatcctcctagacacagtgaatgaatatc
attttaaaattcaagagaaaaaaatatgctaaatggaacatcccataatg
tagaaaagaaatcctggaacaatttggttaataatatagtatttataata
attctagaaaatgaaaggaatagcttcatccccagtatgttttggcaaga
gaggttttgtgctaactgagacagcatcagttgtggatgtctggtatgtg
atactgagatgcagtccaagagtatggaggctcacaggaatgactgatgg
gtgagtttgccttgatgtctgatgggaaagagtaatgctcacatagggta
tgagctgacctgaagtctaacagtattcctgagaggccacccagaaatct
ggaaagtaaagcttaaacacatccaggagacagaatgaaaatcccatcat
acgacactcataaataatataaagcattggatagagcagacagaatctac
tccagaagagaagaagaaccaatagtttctgaaacagaattctcatctgc
tactattgagatcgtggactgatgtagtggaaaagaggataatgtaagag
ctactcatccagaaaagttacagcaaagcacataaaaaagtactgttcca
tgatgtctgagaaattggctatgtcaaaccctaattcattctcaccacac
acct
gaattcacataagtgtgctgccacttgactggtaaaaagacaatgtcctt
caaaatgcaatctctatgattttcattgtttacaaacagaatttagatag
gagtcatctggattgatctttaccttagcaaaaacctattgttgttgttt
tttaatggacataagttttaattatgacctaatttgaaatgaaatatcaa
agagctaggcaagcgagaaaacagaactccccaaataaaagggctcacaa
tcagatcacagttagtactggcactttcaaataactgtgtctcttatctt
gcccttatcaaccctaagttggtaactcggtgtgcagttggatccctaag
gaaaaaagctaagattcctgggaatcctctaaaattaataatctaccttc
agaccactcaagtgaagtctgaagtgaagggaaatggctgagtttgttca
cttgaaactgtgggaaaccaccctgcttgttctttaagggcacaatcctg
tctctgcaccacatctcagctgattattaactcaagctgtggtgcccttc
tgtaggtcacctataggccaacagtgtgctcatgtgcagtttcttaggcc
aagcagaaacataggcatcaaggctcacagatgactaataggatatattt
gaaaaattactttgaactgcactaaagatctcagcttttttttttaagaa
atggattaatttgcctccactaaaatgtacaaagtgaagatgtctgtgta
aagctggggtatcaaacagaagcagctgtgacccaagaatttactgtctc
taagatttgatggaatttaaattgggcccaaagagaattaacaggctaga
gtgcacatcgtgtccctcctgagagccactgcttttccttttagtgatac
agaaagctttggagttcgcagggtgttttctgcactctacagacaatgca
tgtagaatgccttacgcaggttactggtctgctacatgtggcctgaggat
agcatccatggtgaactgtatgtgagtggcgcccctgagtacacaatatc
aggaactagtgacatagagaacacactgtttcactggttagatttagaat
tagcaaaacctacctcctctttatgctatggttcataaatctgcctggaa
ctttttcttcaacaattcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_77168374_77169627
seq2: B6Ng01-347H05.b_50_1303

seq1  GAATTCCTTAGTTGGCTACAGTTGGTTGTCTAAGGTCGAGGTCCAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGTTGGCTACAGTTGGTTGTCTAAGGTCGAGGTCCAGAGAG  50

seq1  AGCAACATCATCTTAATTAAATGTTAGAACTGTGTCTTGTCCCTCAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACATCATCTTAATTAAATGTTAGAACTGTGTCTTGTCCCTCAACAA  100

seq1  GGATTCATCGCTCATAGAAATTGATGTGTTCTCCATTGTTGCCAGCAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCATCGCTCATAGAAATTGATGTGTTCTCCATTGTTGCCAGCAAAC  150

seq1  CTAAAACTTTCTCCCTTCTAACATGAGGCAAATGAACACATTACGAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACTTTCTCCCTTCTAACATGAGGCAAATGAACACATTACGAAACC  200

seq1  ATATCAGAGGAATCGCTCTGTGAGATTATAAAGTCCACAATTTATAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGAGGAATCGCTCTGTGAGATTATAAAGTCCACAATTTATAGTCT  250

seq1  GCTTCTAGGAGCTGATCACTTATGACAGGCAGCATCTATTTTAAGCACCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAGGAGCTGATCACTTATGACAGGCAGCATCTATTTTAAGCACCG  300

seq1  TAGGTAACGAAACACATTCTGGACATCAAAGATAACAAATACTGCATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAACGAAACACATTCTGGACATCAAAGATAACAAATACTGCATTTC  350

seq1  TGAGTCTATTGATTTAAAAAAAATGCCCAAAGAATTCATGAAGCAGATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTATTGATTTAAAAAAAATGCCCAAAGAATTCATGAAGCAGATGC  400

seq1  ATACAAAAGCTTAATAAAAATTGAAGCCTACATAGTTTTCTTGTGATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAAGCTTAATAAAAATTGAAGCCTACATAGTTTTCTTGTGATTTC  450

seq1  TGAGTTCACATCTTGATTTATAAAGTTCCTAGATTAAATCTTTGTTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCACATCTTGATTTATAAAGTTCCTAGATTAAATCTTTGTTCATT  500

seq1  TCTGTCAGATGAGGTATAAAATAAGCCCAGGACTAGAATTCCTACTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAGATGAGGTATAAAATAAGCCCAGGACTAGAATTCCTACTGAGA  550

seq1  GGGCTTTTTCCTTCATGAAATAATCCTCCTAGACACAGTGAATGAATATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTTTCCTTCATGAAATAATCCTCCTAGACACAGTGAATGAATATC  600

seq1  ATTTTAAAATTCAAGAGAAAAAAATATGCTAAATGGAACATCCCATAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAATTCAAGAGAAAAAAATATGCTAAATGGAACATCCCATAATG  650

seq1  TAGAAAAGAAATCCTGGAACAATTTGGTTAATAATATAGTATTTATAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAGAAATCCTGGAACAATTTGGTTAATAATATAGTATTTATAATA  700

seq1  ATTCTAGAAAATGAAAGGAATAGCTTCATCCCCAGTATGTTTTGGCAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGAAAATGAAAGGAATAGCTTCATCCCCAGTATGTTTTGGCAAGA  750

seq1  GAGGTTTTGTGCTAACTGAGACAGCATCAGTTGTGGATGTCTGGTATGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTTGTGCTAACTGAGACAGCATCAGTTGTGGATGTCTGGTATGTG  800

seq1  ATACTGAGATGCAGTCCAAGAGTATGGAGGCTCACAGGAATGACTGATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAGATGCAGTCCAAGAGTATGGAGGCTCACAGGAATGACTGATGG  850

seq1  GTGAGTTTGCCTTGATGTCTGATGGGAAAGAGTAATGCTCACATAGGGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTTGCCTTGATGTCTGATGGGAAAGAGTAATGCTCACATAGGGTA  900

seq1  TGAGCTGACCTGAAGTCTAACAGTATTCCTGAGAGGCCACCCAGAAATCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGACCTGAAGTCTAACAGTATTCCTGAGAGGCCACCCAGAAATCT  950

seq1  GGAAAGTAAAGCTTAAACACATCCAGGAGACAGAATGAAAATCCAATCAT  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGAAAGTAAAGCTTAAACACATCCAGGAGACAGAATGAAAATCCCATCAT  1000

seq1  ACGACACTCATAAAATAATATAAAGCATTGGATAGAGCAAGACAGAATCT  1050
      ||||||||||| |||||||||||||||||||||||||| |||||||||||
seq2  ACGACACTCAT-AAATAATATAAAGCATTGGATAGAGC-AGACAGAATCT  1048

seq1  ACTCCAG-AGAGA--GAGAACCAATAGTTTCTGAAACAGAATCTTCATCT  1097
      ||||||| |||||   ||||||||||||||||||||||||||  ||||||
seq2  ACTCCAGAAGAGAAGAAGAACCAATAGTTTCTGAAACAGAATTCTCATCT  1098

seq1  GCTACTATTGAGAATTCGTGGACTTGATGTAGTTG-AGAGAGGATAATGT  1146
      |||||||||||||  |||||||| ||||||||| | | ||||||||||||
seq2  GCTACTATTGAGA--TCGTGGAC-TGATGTAGTGGAAAAGAGGATAATGT  1145

seq1  AAGAGGCTACTCAT-CAGATAAGTAACAGCAAAGCAACAATTAAAAAAAA  1195
      |||| ||||||||| |||| |||| |||||||||||       | |||||
seq2  AAGA-GCTACTCATCCAGAAAAGTTACAGCAAAGCA------CATAAAAA  1188

seq1  AGTACCTGTCCTTGTTGTCT-AGAGATATGCTA-GTCAAACCCT-ATTCA  1242
      |||||   ||| || ||||| ||| ||  |||| |||||||||| |||||
seq2  AGTACTGTTCCATGATGTCTGAGAAATTGGCTATGTCAAACCCTAATTCA  1238

seq1  TT----CCACACACTT  1254
      ||    |||||||| |
seq2  TTCTCACCACACACCT  1254

seq1: chr2_77294696_77295880
seq2: B6Ng01-347H05.g_65_1233 (reverse)

seq1  GGAATTTGTTGAAAACAAAAAAAGTT-CAGACAGAATTATGACCATTAGC  49
      |||| |||||||    | |||||||| ||| |||| |||||| |  ||||
seq2  GGAA-TTGTTGA----AGAAAAAGTTCCAGGCAGATTTATGAACCATAGC  45

seq1  ATAAAGA-GAGTTAGTGTTTTTGCTAATTTCTAAAATCTAACCAGTGAAA  98
      ||||||| ||| ||  | ||||||||| |||| |||||||||||||||||
seq2  ATAAAGAGGAGGTA--GGTTTTGCTAA-TTCT-AAATCTAACCAGTGAAA  91

seq1  CAGTTGTGGTCTCTATGGTCCAACTAGTTCCTTGATATTGTGTAACTCCA  148
      ||| |||| ||||||| |||  ||||||||| ||||||||||| ||||  
seq2  CAG-TGTGTTCTCTAT-GTC--ACTAGTTCC-TGATATTGTGT-ACTC--  133

seq1  GGGGGCGCCACTCACATACAGTTCACCATGGATGCTATCCTCCAGGCCAC  198
       |||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGGGGCGCCACTCACATACAGTTCACCATGGATGCTATCCT-CAGGCCAC  182

seq1  ATGTAGCAGACCAGTAACCTGCGTAAGGCATTCTACATGCATTGTCTGTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCAGACCAGTAACCTGCGTAAGGCATTCTACATGCATTGTCTGTA  232

seq1  GAGTGCAGAAAACACCCTGCGAACTCCAAAGCTTTCTGTATCACTAAAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCAGAAAACACCCTGCGAACTCCAAAGCTTTCTGTATCACTAAAAG  282

seq1  GAAAAGCAGTGGCTCTCAGGAGGGACACGATGTGCACTCTAGCCTGTTAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCAGTGGCTCTCAGGAGGGACACGATGTGCACTCTAGCCTGTTAA  332

seq1  TTCTCTTTGGGCCCAATTTAAATTCCATCAAATCTTAGAGACAGTAAATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTGGGCCCAATTTAAATTCCATCAAATCTTAGAGACAGTAAATT  382

seq1  CTTGGGTCACAGCTGCTTCTGTTTGATACCCCAGCTTTACACAGACATCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTCACAGCTGCTTCTGTTTGATACCCCAGCTTTACACAGACATCT  432

seq1  TCACTTTGTACATTTTAGTGGAGGCAAATTAATCCATTTCTTAAAAAAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTGTACATTTTAGTGGAGGCAAATTAATCCATTTCTTAAAAAAAA  482

seq1  AAGCTGAGATCTTTAGTGCAGTTCAAAGTAATTTTTCAAATATATCCTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAGATCTTTAGTGCAGTTCAAAGTAATTTTTCAAATATATCCTAT  532

seq1  TAGTCATCTGTGAGCCTTGATGCCTATGTTTCTGCTTGGCCTAAGAAACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATCTGTGAGCCTTGATGCCTATGTTTCTGCTTGGCCTAAGAAACT  582

seq1  GCACATGAGCACACTGTTGGCCTATAGGTGACCTACAGAAGGGCACCACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGAGCACACTGTTGGCCTATAGGTGACCTACAGAAGGGCACCACA  632

seq1  GCTTGAGTTAATAATCAGCTGAGATGTGGTGCAGAGACAGGATTGTGCCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGTTAATAATCAGCTGAGATGTGGTGCAGAGACAGGATTGTGCCC  682

seq1  TTAAAGAACAAGCAGGGTGGTTTCCCACAGTTTCAAGTGAACAAACTCAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAACAAGCAGGGTGGTTTCCCACAGTTTCAAGTGAACAAACTCAG  732

seq1  CCATTTCCCTTCACTTCAGACTTCACTTGAGTGGTCTGAAGGTAGATTAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCCCTTCACTTCAGACTTCACTTGAGTGGTCTGAAGGTAGATTAT  782

seq1  TAATTTTAGAGGATTCCCAGGAATCTTAGCTTTTTTCCTTAGGGATCCAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTAGAGGATTCCCAGGAATCTTAGCTTTTTTCCTTAGGGATCCAA  832

seq1  CTGCACACCGAGTTACCAACTTAGGGTTGATAAGGGCAAGATAAGAGACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACACCGAGTTACCAACTTAGGGTTGATAAGGGCAAGATAAGAGACA  882

seq1  CAGTTATTTGAAAGTGCCAGTACTAACTGTGATCTGATTGTGAGCCCTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATTTGAAAGTGCCAGTACTAACTGTGATCTGATTGTGAGCCCTTT  932

seq1  TATTTGGGGAGTTCTGTTTTCTCGCTTGCCTAGCTCTTTGATATTTCATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGGGAGTTCTGTTTTCTCGCTTGCCTAGCTCTTTGATATTTCATT  982

seq1  TCAAATTAGGTCATAATTAAAACTTATGTCCATTAAAAAACAACAACAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTAGGTCATAATTAAAACTTATGTCCATTAAAAAACAACAACAAT  1032

seq1  AGGTTTTTGCTAAGGTAAAGATCAATCCAGATGACTCCTATCTAAATTCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTTGCTAAGGTAAAGATCAATCCAGATGACTCCTATCTAAATTCT  1082

seq1  GTTTGTAAACAATGAAAATCATAGAGATTGCATTTTGAAGGACATTGTCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTAAACAATGAAAATCATAGAGATTGCATTTTGAAGGACATTGTCT  1132

seq1  TTTTACCAGTCAAGTGGCAGCACACTTATGTGAATTC  1185
      |||||||||||||||||||||||||||||||||||||
seq2  TTTTACCAGTCAAGTGGCAGCACACTTATGTGAATTC  1169