BAC Information

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BAC

Clone NameB6Ng01-347P17
Chromosome2 (Build37)
Map Location 37,232,721 - 37,361,144
singlet/doubletdoublet
Overlap geneRc3h2, Zbtb6, Zbtb26, Rabgap1
Upstream geneOlfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl
Downstream geneGpr21, 6430510M02Rik, Strbp, LOC639491, Dennd1a, LOC100040947, Lhx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347P17.bB6Ng01-347P17.g
ACCGA129420GA129421
length1,1161,098
definitionB6Ng01-347P17.b B6Ng01-347P17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,360,003 - 37,361,144)(37,232,721 - 37,233,832)
sequence
gaattccattaatgtatttaagagaatggtaggacacagctgattatgtt
aacaaagtttgacaacaaaacaaacgaaggcattatacaaaatgtgctgg
attcacagaaatggaatgaggccttaccaggtatggtgacacatgacaaa
cccagcacttggaggcagaggcccttggacctctgtgagttctagaccag
tctggtctatagaataagcccaggaccaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaagagctctggactgtgaacactgtagagatggtattaac
tatatttttatgaagtcttgtcaacattgaattacaatgctggtttaccc
acaaacatttcacacatataaaattcctgtagaagcagtccacacactcc
agcttactgagctgaaactgaaactgacaagtatcagcaatcctgtctct
tattattaaagaaatataaaatttaagacgagacatttccaagggctttt
gcacagttcttgtattacagtcatgcgtctaaagacaaccacgctttagt
ttgccattttcttttgtacatatttgacatttcccaatgcagacagtgtt
ttgtccaaagtgtaaagcagtgtcaagagtatcagagcagatcatgtcca
tgtgaagtgctaaccctgaggagatgacatctgctgagacacaactttac
caaaaatacagttaagtttaatagtcaaaacctgtaaggggaaaaaaacc
ttaatgtataaggcccctaaggaacattaatgataataaccagaacatca
gaatagagacacgatcagatcactttcaaatttagctttttcctcccagg
acatcctaccaaggaagaaaagatatgctatatatgtctcaccagagcac
ctctagttatgctaatcagcaaccaaaggtaatatactggttgtaacagg
cttctaacactgctgtcaactctgtggtcttcttagaacagggtctcttt
ggtgcatcctggctggcttggactcattatataggcaggctagccttcat
tccaggaatctctgtctctgcatccgagtgctggataggcaccacgcgca
gcatctggagatacaa
gaattccacttttgttgcatggccagagcattagcttccctctgaagaag
taatgagttactcttggcctccatgaagagagaagaaaacataagcttag
ctttcaattattattttacgttttaaaaatcaaagctaaatatatagagc
ctacctgctgaagttcaatgctcaaaaggtctccggtactagaatgcttt
ctatgaccagataaatcagtaacaatgaatctgtccctttaaaaagaatt
atatttactgtagttaaagtgagacataaaggagccaaagcaataatgac
tctatgttctttgtaacgatcactgaatgtgttttagtcactattccaaa
tgtaaaatttgttccagaaagttttttttttttttttttttttttttgag
acagggtttctctgtgtagccctggctgtcctggaactcactctgtagac
caggctggcctcgaactcagaaatccgcctgcctctgcctcccaggtgct
gggattaaaggcgtgcgccaccacgcccagcattcagaaagtttttacac
agctcaaattagcaaggcttaatccatggacaaccagtaatgatttttct
attttaggtgcatgtaagtttgagagtaaaggaaatgagagtatagttac
cgttcaatatagtgtgctgatgatgtagcatcgttgccatatgaactcca
ccttgaatcgacagcattcacgtaagggacataatctgcatggaacacag
aaaaacagtttagaaaggcagaaaataagccagacaaggtggtacacatc
tgcaatctcagcactcagaggctaaagcagaagcactgccacagctatgc
tttgaggccagctgggatatagtgagaacctgtctcaaaaactaaaaaaa
aaaaaaaaagaaagaagaagaaagaaatttaaatcagaatataaatatgt
actatttaaatggccatgtattttttcccactagccaaaattctacttaa
ctattcattctcatattattagttttctacctcaaggttagataaacagt
acatgtaaaaaattccttggattagtaatggcctaactgatacctgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_37360003_37361144
seq2: B6Ng01-347P17.b_48_1163 (reverse)

seq1  TTGTATCTCAAAGAATTTGGCTGCGCGTGGTGCCCTTTAAATCCCAGCAC  50
      |||||||||  |||     |||||||||||||||  |      |||||||
seq2  TTGTATCTC-CAGA----TGCTGCGCGTGGTGCCTAT------CCAGCAC  39

seq1  TCGGGATGCAGAGACAGAGGATTTCCCTGAAATGAAGGCTAGCCTGGCCT  100
      || ||||||||||||||| ||||  |||| ||||||||||||||| ||||
seq2  TC-GGATGCAGAGACAGA-GATT--CCTGGAATGAAGGCTAGCCT-GCCT  84

seq1  ATATAATGAGTTCAAAGCCAGCCAGGGATGCA-CAAAGAGACCCTG-TCT  148
      |||||||||| || |||||||||| ||||||| ||||||||||||| |||
seq2  ATATAATGAG-TCCAAGCCAGCCA-GGATGCACCAAAGAGACCCTGTTCT  132

seq1  AAAAGAAAAAGAACAAAAAGAGTTTGACAGCAGTGTTAGGAAGCCTGTTT  198
           || |||| || | ||   ||||||||||||||| |||||||| ||
seq2  -----AAGAAGACCACAGAG---TTGACAGCAGTGTTA-GAAGCCTG-TT  172

seq1  ACAAACAGTATATTACCTTTGGTTGCTGATTAGCATAACTAGAGGTGCTC  248
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCAGTATATTACCTTTGGTTGCTGATTAGCATAACTAGAGGTGCTC  222

seq1  TGGTGAGACATATATAGCATATCTTTTCTTCCTTGGTAGGATGTCCTGGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGACATATATAGCATATCTTTTCTTCCTTGGTAGGATGTCCTGGG  272

seq1  AGGAAAAAGCTAAATTTGAAAGTGATCTGATCGTGTCTCTATTCTGATGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAGCTAAATTTGAAAGTGATCTGATCGTGTCTCTATTCTGATGT  322

seq1  TCTGGTTATTATCATTAATGTTCCTTAGGGGCCTTATACATTAAGGTTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTATTATCATTAATGTTCCTTAGGGGCCTTATACATTAAGGTTTT  372

seq1  TTTCCCCTTACAGGTTTTGACTATTAAACTTAACTGTATTTTTGGTAAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCTTACAGGTTTTGACTATTAAACTTAACTGTATTTTTGGTAAAG  422

seq1  TTGTGTCTCAGCAGATGTCATCTCCTCAGGGTTAGCACTTCACATGGACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCTCAGCAGATGTCATCTCCTCAGGGTTAGCACTTCACATGGACA  472

seq1  TGATCTGCTCTGATACTCTTGACACTGCTTTACACTTTGGACAAAACACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGCTCTGATACTCTTGACACTGCTTTACACTTTGGACAAAACACT  522

seq1  GTCTGCATTGGGAAATGTCAAATATGTACAAAAGAAAATGGCAAACTAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCATTGGGAAATGTCAAATATGTACAAAAGAAAATGGCAAACTAAA  572

seq1  GCGTGGTTGTCTTTAGACGCATGACTGTAATACAAGAACTGTGCAAAAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGTTGTCTTTAGACGCATGACTGTAATACAAGAACTGTGCAAAAGC  622

seq1  CCTTGGAAATGTCTCGTCTTAAATTTTATATTTCTTTAATAATAAGAGAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAAATGTCTCGTCTTAAATTTTATATTTCTTTAATAATAAGAGAC  672

seq1  AGGATTGCTGATACTTGTCAGTTTCAGTTTCAGCTCAGTAAGCTGGAGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGCTGATACTTGTCAGTTTCAGTTTCAGCTCAGTAAGCTGGAGTG  722

seq1  TGTGGACTGCTTCTACAGGAATTTTATATGTGTGAAATGTTTGTGGGTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACTGCTTCTACAGGAATTTTATATGTGTGAAATGTTTGTGGGTAA  772

seq1  ACCAGCATTGTAATTCAATGTTGACAAGACTTCATAAAAATATAGTTAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCATTGTAATTCAATGTTGACAAGACTTCATAAAAATATAGTTAAT  822

seq1  ACCATCTCTACAGTGTTCACAGTCCAGAGCTCTTTTTTTTTTTTTTTTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTCTACAGTGTTCACAGTCCAGAGCTCTTTTTTTTTTTTTTTTTT  872

seq1  TTTTTTTTTTTTTTTTTGGTCCTGGGCTTATTCTATAGACCAGACTGGTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTGGTCCTGGGCTTATTCTATAGACCAGACTGGTC  922

seq1  TAGAACTCACAGAGGTCCAAGGGCCTCTGCCTCCAAGTGCTGGGTTTGTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTCACAGAGGTCCAAGGGCCTCTGCCTCCAAGTGCTGGGTTTGTC  972

seq1  ATGTGTCACCATACCTGGTAAGGCCTCATTCCATTTCTGTGAATCCAGCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCACCATACCTGGTAAGGCCTCATTCCATTTCTGTGAATCCAGCA  1022

seq1  CATTTTGTATAATGCCTTCGTTTGTTTTGTTGTCAAACTTTGTTAACATA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTATAATGCCTTCGTTTGTTTTGTTGTCAAACTTTGTTAACATA  1072

seq1  ATCAGCTGTGTCCTACCATTCTCTTAAATACATTAATGGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTGTGTCCTACCATTCTCTTAAATACATTAATGGAATTC  1116

seq1: chr2_37232721_37233832
seq2: B6Ng01-347P17.g_65_1162

seq1  GAATTCCACTTTTGTTGCATGGCCAGAGCATTAGCTTCCCTCTGAAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTTTGTTGCATGGCCAGAGCATTAGCTTCCCTCTGAAGAAG  50

seq1  TAATGAGTTACTCTTGGCCTCCATGAAGAGAGAAGAAAACATAAGCTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGTTACTCTTGGCCTCCATGAAGAGAGAAGAAAACATAAGCTTAG  100

seq1  CTTTCAATTATTATTTTACGTTTTAAAAATCAAAGCTAAATATATAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAATTATTATTTTACGTTTTAAAAATCAAAGCTAAATATATAGAGC  150

seq1  CTACCTGCTGAAGTTCAATGCTCAAAAGGTCTCCGGTACTAGAATGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGCTGAAGTTCAATGCTCAAAAGGTCTCCGGTACTAGAATGCTTT  200

seq1  CTATGACCAGATAAATCAGTAACAATGAATCTGTCCCTTTAAAAAGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGACCAGATAAATCAGTAACAATGAATCTGTCCCTTTAAAAAGAATT  250

seq1  ATATTTACTGTAGTTAAAGTGAGACATAAAGGAGCCAAAGCAATAATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACTGTAGTTAAAGTGAGACATAAAGGAGCCAAAGCAATAATGAC  300

seq1  TCTATGTTCTTTGTAACGATCACTGAATGTGTTTTAGTCACTATTCCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTTCTTTGTAACGATCACTGAATGTGTTTTAGTCACTATTCCAAA  350

seq1  TGTAAAATTTGTTCCAGAAAGTTTTTTTTTTTTTTTTTTTTTTTTTTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATTTGTTCCAGAAAGTTTTTTTTTTTTTTTTTTTTTTTTTTGAG  400

seq1  ACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGAC  450

seq1  CAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAGGTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAGGTGCT  500

seq1  GGGATTAAAGGCGTGCGCCACCACGCCCAGCATTCAGAAAGTTTTTACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTAAAGGCGTGCGCCACCACGCCCAGCATTCAGAAAGTTTTTACAC  550

seq1  AGCTCAAATTAGCAAGGCTTAATCCATGGACAACCAGTAATGATTTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAATTAGCAAGGCTTAATCCATGGACAACCAGTAATGATTTTTCT  600

seq1  ATTTTAGGTGCATGTAAGTTTGAGAGTAAAGGAAATGAGAGTATAGTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGGTGCATGTAAGTTTGAGAGTAAAGGAAATGAGAGTATAGTTAC  650

seq1  CGTTCAATATAGTGTGCTGATGATGTAGCATCGTTGCCATATGAACTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCAATATAGTGTGCTGATGATGTAGCATCGTTGCCATATGAACTCCA  700

seq1  CCTTGAATCGACAGCATTCACGTAAGGGACATAATCTGCATGGAACACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAATCGACAGCATTCACGTAAGGGACATAATCTGCATGGAACACAG  750

seq1  AAAAACAGTTTAGAAAGGCAGAAAATAAGCCAGACAAGGTGGTACACATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGTTTAGAAAGGCAGAAAATAAGCCAGACAAGGTGGTACACATC  800

seq1  TGCAATCCCAGCACTCAGGAGGCTAAGGCAGAAGCACTGCCACAGCTATG  850
      ||||||| ||||||||| |||||||| |||||||||||||||||||||||
seq2  TGCAATCTCAGCACTCA-GAGGCTAAAGCAGAAGCACTGCCACAGCTATG  849

seq1  CTTTGAGGCCAGCTGGGATATAGTGAGAACCTGTCTCAAAAAACTAAAAA  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTTTGAGGCCAGCTGGGATATAGTGAGAACCTGTCTC-AAAAACTAAAAA  898

seq1  AAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAATTTAAAAATCAGAATATA  950
      ||||||||||||||||||   |||||||||| ||   |||||||||||||
seq2  AAAAAAAAAAAGAAAGAA--GAAGAAAGAAATTT---AAATCAGAATATA  943

seq1  AATATGTACTATTTAAAATGGCAATGTATTTTTTCCCACTAGCCAAAAAT  1000
      |||||||||||||| ||||||| ||||||||||||||||||||| |||||
seq2  AATATGTACTATTT-AAATGGCCATGTATTTTTTCCCACTAGCC-AAAAT  991

seq1  TCTACTTAAACCATTTCATTCTCATATTATTAAGTTTTCTACCTCAGAGG  1050
      |||||||||  |  ||||||||||||||||| |||||||||||||| |||
seq2  TCTACTTAA--CTATTCATTCTCATATTATT-AGTTTTCTACCTCA-AGG  1037

seq1  TTAGGAATAAACAGTACATGGTAAAAAAAATTCCTTGGTATTAGTAAAAT  1100
      ||||  ||||||||||||||    |||||||||||||| ||||||  |||
seq2  TTAG--ATAAACAGTACATG---TAAAAAATTCCTTGG-ATTAGT--AAT  1079

seq1  GGCTTACCTGAT-------  1112
      ||| || |||||       
seq2  GGCCTAACTGATACCTGAT  1098