BAC Information

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BAC

Clone NameB6Ng01-348H09
Chromosome2 (Build37)
Map Location 98,299,792 - 98,435,769
singlet/doubletdoublet
Overlap geneLOC100042886
Upstream geneLrrc4c, LOC621146, LOC664974
Downstream geneLOC621386
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348H09.bB6Ng01-348H09.g
ACCGA129751GA129752
length1,1661,086
definitionB6Ng01-348H09.b B6Ng01-348H09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,434,586 - 98,435,769)(98,299,792 - 98,300,868)
sequence
gaattctcattgcagctcttacattaggggacattagtagtagtcctgtc
acataagaacttagtaattattaatataattttagggattcttataggat
catcaagaattaagaaatcatatctttgtctataaagcaacactagtaga
cagtacaccttcatttttctacatagatctgctcaaaaaggtggttaata
tctagtgataatatcagaaatcttacctaaagtgaaattctcctggcctt
gtctgcaggagaaaacccattgtagattttaatccaacgcccaaccttct
caagaagaccatctgctagtttctagctcctctttgttagctcctgacac
aaaggcacacatttcaatactgaataatgaatataattacttgttggtgc
taagtaagtacaacagaggcacatttccaggtcagtcgtgtttttcacat
ttaattttatttttatgagtctgagtattagtgatttgagttgttatatt
tttaactcactctaagaagacctttaacttgcaatcttcctgatttacag
ccaatgatagctagcatcacaagccataaatcccatgcccatctagaatt
ccatttactaatctttaaaaaagcatttcccaaggcatatctcagaagtc
tatatttctgcatcaggttagtgcatgataaacatttaacttatataaat
gaaacttctgagaaaggttaggttaataataagcagactttattgcttgt
aatatatcagagaatcatcaatgccagaatagaattttgacatttaaaga
ataatgtagaatattctaacctcgattccttttcctggacaatctttgca
ataattctgaaagcattttctaaaagcctgtgacactagcatggagggta
tgattattttaaaaatgagactattcagtgtcaaataactggagtacctg
accaaggtctcaacctacgctttcaaaccatgtaaagcttatatatatat
aacccattaaaaatggggctcagaactgaacaagattctcacctgagata
ccggaatggcagagagcactggaaaaatgtcaacatccttatcatcaagt
aatgcaaatcaaacaaccctgagaatcaacctcacccagtcagaatgcta
ggatcaagattcaggt

gaattcagagtttcaatataatcctaggatttaagaggcattcatccata
taaataagtctgtgttagtctgatatatagagttacctctgccttaccaa
tacctcctgaattggagataaagatttgccagatgtctaactactattag
accagtagtagtatcaaatacttaaaaagtatgagtagctcatttgaaaa
cagaaacattccagattcagaattttttatagatacaaatgcattatttt
gtacatagcttcgacaaacaaaaataaatacaaatgtactaaaaagagat
gtttaaatgtaacctacagacacataagtgctataatgtgctatttggat
ccattcaatattctagtgatttctgttaaatagaggctaactctacaacc
atgataacaatatactgctttccctaacttgccctaatcctatctcctac
tccttgaaattgattttgaatttatagtccagtaaaattatacattgtat
taattactactttgcttactgctttataaaaacactcacaattgcaaatg
gctccttgtgaatgaaattactattagttccattatcttataatcaaaga
atattggaatattaacctcaaccacctaaaatattgatatgtcacagaaa
taggatagtatcttccaaagtttgagttgtataattgttaactgtcttat
ttatttcacatttcaaatcaagtatcaattttttatttacattatcttga
aattccataaagccttagaaaaataagacggggagttaccatggctacat
acatttttcaactttaccacagtctattataagtgttgcagtacattaga
atcacttaacaatttttttttaaaactcctatttttcactcctactcaca
gacattttgatttcaatggcatgaagttcacctgaaatgctggtatctgt
aacctatatcatgtgattctaatacgcagccatgggttttactccactat
ttttttaactttagtctggtccttttgcatctggcagcatatcaataaga
caagttagccagccaggatgttggctcgtatgtatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_98434586_98435769
seq2: B6Ng01-348H09.b_49_1214 (reverse)

seq1  ACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCA  50
      ||||||| | |||||| ||| |||||||||||| ||||||| || |||||
seq2  ACCTGAA-TCTTGATCCTAG-CATTCTGACTGG-GTGAGGTTGATTCTCA  47

seq1  GGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTT  100
      |||||| ||||||||||| || | |||||| ||||||||||| ||| |||
seq2  GGGTTG-TTTGATTTGCA-TTACTTGATGA-TAAGGATGTTG-ACA-TTT  92

seq1  TTCAAGTGCTTCTCTGCCATT-CGGTATTCCTCAGGTGAGAATTCTTTGT  149
      ||| ||||| ||||||||||| ||||||  |||||||||||||   ||||
seq2  TTCCAGTGC-TCTCTGCCATTCCGGTAT--CTCAGGTGAGAAT--CTTGT  137

seq1  TCAGTTCTGAGCCCCATTTTTTAATGGGGTTATATTATATAATAAGCTTT  199
      |||||||||||||||| |||||||| |||||||| ||||| |||||| ||
seq2  TCAGTTCTGAGCCCCA-TTTTTAAT-GGGTTATA-TATAT-ATAAGC-TT  182

seq1  TACATGGTTTTGAAGCGTAGGTTGGAGACCTTGGTCAGGTACTCCAGTTA  249
      ||||||||||  ||||||||||| ||||||||||||||||||||||||||
seq2  TACATGGTTTGAAAGCGTAGGTT-GAGACCTTGGTCAGGTACTCCAGTTA  231

seq1  TTTGACACTGAATAGTCTCATTTTTAAAATAATCATACCCTCCATGCTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACACTGAATAGTCTCATTTTTAAAATAATCATACCCTCCATGCTAG  281

seq1  TGTCACAGGCTTTTAGAAAATGCTTTCAGAATTATTGCAAAGATTGTCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAGGCTTTTAGAAAATGCTTTCAGAATTATTGCAAAGATTGTCCA  331

seq1  GGAAAAGGAATCGAGGTTAGAATATTCTACATTATTCTTTAAATGTCAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGGAATCGAGGTTAGAATATTCTACATTATTCTTTAAATGTCAAA  381

seq1  ATTCTATTCTGGCATTGATGATTCTCTGATATATTACAAGCAATAAAGTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATTCTGGCATTGATGATTCTCTGATATATTACAAGCAATAAAGTC  431

seq1  TGCTTATTATTAACCTAACCTTTCTCAGAAGTTTCATTTATATAAGTTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATTATTAACCTAACCTTTCTCAGAAGTTTCATTTATATAAGTTAA  481

seq1  ATGTTTATCATGCACTAACCTGATGCAGAAATATAGACTTCTGAGATATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATCATGCACTAACCTGATGCAGAAATATAGACTTCTGAGATATG  531

seq1  CCTTGGGAAATGCTTTTTTAAAGATTAGTAAATGGAATTCTAGATGGGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGAAATGCTTTTTTAAAGATTAGTAAATGGAATTCTAGATGGGCA  581

seq1  TGGGATTTATGGCTTGTGATGCTAGCTATCATTGGCTGTAAATCAGGAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTTATGGCTTGTGATGCTAGCTATCATTGGCTGTAAATCAGGAAG  631

seq1  ATTGCAAGTTAAAGGTCTTCTTAGAGTGAGTTAAAAATATAACAACTCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAAGTTAAAGGTCTTCTTAGAGTGAGTTAAAAATATAACAACTCAA  681

seq1  ATCACTAATACTCAGACTCATAAAAATAAAATTAAATGTGAAAAACACGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTAATACTCAGACTCATAAAAATAAAATTAAATGTGAAAAACACGA  731

seq1  CTGACCTGGAAATGTGCCTCTGTTGTACTTACTTAGCACCAACAAGTAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTGGAAATGTGCCTCTGTTGTACTTACTTAGCACCAACAAGTAAT  781

seq1  TATATTCATTATTCAGTATTGAAATGTGTGCCTTTGTGTCAGGAGCTAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCATTATTCAGTATTGAAATGTGTGCCTTTGTGTCAGGAGCTAAC  831

seq1  AAAGAGGAGCTAGAAACTAGCAGATGGTCTTCTTGAGAAGGTTGGGCGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGAGCTAGAAACTAGCAGATGGTCTTCTTGAGAAGGTTGGGCGTT  881

seq1  GGATTAAAATCTACAATGGGTTTTCTCCTGCAGACAAGGCCAGGAGAATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAATCTACAATGGGTTTTCTCCTGCAGACAAGGCCAGGAGAATT  931

seq1  TCACTTTAGGTAAGATTTCTGATATTATCACTAGATATTAACCACCTTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTAGGTAAGATTTCTGATATTATCACTAGATATTAACCACCTTTT  981

seq1  TGAGCAGATCTATGTAGAAAAATGAAGGTGTACTGTCTACTAGTGTTGCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGATCTATGTAGAAAAATGAAGGTGTACTGTCTACTAGTGTTGCT  1031

seq1  TTATAGACAAAGATATGATTTCTTAATTCTTGATGATCCTATAAGAATCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGACAAAGATATGATTTCTTAATTCTTGATGATCCTATAAGAATCC  1081

seq1  CTAAAATTATATTAATAATTACTAAGTTCTTATGTGACAGGACTACTACT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATTATATTAATAATTACTAAGTTCTTATGTGACAGGACTACTACT  1131

seq1  AATGTCCCCTAATGTAAGAGCTGCAATGAGAATTC  1184
      |||||||||||||||||||||||||||||||||||
seq2  AATGTCCCCTAATGTAAGAGCTGCAATGAGAATTC  1166


seq1: chr2_98299792_98300868
seq2: B6Ng01-348H09.g_67_1152

seq1  GAATTCAGAGTTTCAATATAATCCTAGGATTTAAGAGGCATTCATCCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGTTTCAATATAATCCTAGGATTTAAGAGGCATTCATCCATA  50

seq1  TAAATAAGTCTGTGTTAGTCTGATATATAGAGTTACCTCTGCCTTACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGTCTGTGTTAGTCTGATATATAGAGTTACCTCTGCCTTACCAA  100

seq1  TACCTCCTGAATTGGAGATAAAGATTTGCCAGATGTCTAACTACTATTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCTGAATTGGAGATAAAGATTTGCCAGATGTCTAACTACTATTAG  150

seq1  ACCAGTAGTAGTATCAAATACTTAAAAAGTATGAGTAGCTCATTTGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTAGTAGTATCAAATACTTAAAAAGTATGAGTAGCTCATTTGAAAA  200

seq1  CAGAAACATTCCAGATTCAGAATTTTTTATAGATACAAATGCATTATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACATTCCAGATTCAGAATTTTTTATAGATACAAATGCATTATTTT  250

seq1  GTACATAGCTTCGACAAACAAAAATAAATACAAATGTACTAAAAAGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATAGCTTCGACAAACAAAAATAAATACAAATGTACTAAAAAGAGAT  300

seq1  GTTTAAATGTAACCTACAGACACATAAGTGCTATAATGTGCTATTTGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAATGTAACCTACAGACACATAAGTGCTATAATGTGCTATTTGGAT  350

seq1  CCATTCAATATTCTAGTGATTTCTGTTAAATAGAGGCTAACTCTACAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCAATATTCTAGTGATTTCTGTTAAATAGAGGCTAACTCTACAACC  400

seq1  ATGATAACAATATACTGCTTTCCCTAACTTGCCCTAATCCTATCTCCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAACAATATACTGCTTTCCCTAACTTGCCCTAATCCTATCTCCTAC  450

seq1  TCCTTGAAATTGATTTTGAATTTATAGTCCAGTAAAATTATACATTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAAATTGATTTTGAATTTATAGTCCAGTAAAATTATACATTGTAT  500

seq1  TAATTACTACTTTGCTTACTGCTTTATAAAAACACTCACAATTGCAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACTACTTTGCTTACTGCTTTATAAAAACACTCACAATTGCAAATG  550

seq1  GCTCCTTGTGAATGAAATTACTATTAGTTCCATTATCTTATAATCAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTGTGAATGAAATTACTATTAGTTCCATTATCTTATAATCAAAGA  600

seq1  ATATTGGAATATTAACCTCAACCACCTAAAATATTGATATGTCACAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGAATATTAACCTCAACCACCTAAAATATTGATATGTCACAGAAA  650

seq1  TAGGATAGTATCTTCCAAAGTTTGAGTTGTATAATTGTTAACTGTCTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATAGTATCTTCCAAAGTTTGAGTTGTATAATTGTTAACTGTCTTAT  700

seq1  TTATTTCACATTTCAAATCAAGTATCAATTTTTTATTTACATTATCTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCACATTTCAAATCAAGTATCAATTTTTTATTTACATTATCTTGA  750

seq1  AATTCCATAAAGCCTTAGAAAAATAAGACGGGGAGTTACCATGGCTACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCATAAAGCCTTAGAAAAATAAGACGGGGAGTTACCATGGCTACAT  800

seq1  ACA-TTTTCAACTTTACCACAGTCTATTATAAGTGTTGCAGTACATTAGA  849
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTCAACTTTACCACAGTCTATTATAAGTGTTGCAGTACATTAGA  850

seq1  ATCACTTAACAA-TTTTTTTTAAAACTCCTATTTTTCACTCCTACTCACA  898
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATCACTTAACAATTTTTTTTTAAAACTCCTATTTTTCACTCCTACTCACA  900

seq1  GACATTTTGATTTCAATGGCATGAAGTTCACCTG-AATGCTGGTATCTGT  947
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GACATTTTGATTTCAATGGCATGAAGTTCACCTGAAATGCTGGTATCTGT  950

seq1  AACCTATATCATGTGATTCTAATACGCAGCCAT-GGTTTTACTCCACTA-  995
      ||||||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  AACCTATATCATGTGATTCTAATACGCAGCCATGGGTTTTACTCCACTAT  1000

seq1  TTTTTTAACCTTAGTCTGG-CCCTTTGCATCCTGCAGCATATCAAT-AGA  1043
      ||||||||| ||||||||| || ||||||||  ||||||||||||| |||
seq2  TTTTTTAACTTTAGTCTGGTCCTTTTGCATCTGGCAGCATATCAATAAGA  1050

seq1  CCAG-TAGCCAAGCAAGATGTT-GCTCGTATGTATT  1077
      | || ||||||  || |||||| |||||||||||||
seq2  CAAGTTAGCCAGCCAGGATGTTGGCTCGTATGTATT  1086


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