BAC Information

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BAC

Clone NameB6Ng01-349H24
Chromosome2 (Build37)
Map Location 42,352,733 - 42,487,819
singlet/doubletdoublet
Overlap geneLrp1b
Upstream geneLOC625094
Downstream geneLOC100041228, LOC100041245, Kynu
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349H24.bB6Ng01-349H24.g
ACCGA130474GA130475
length1,0081,081
definitionB6Ng01-349H24.b B6Ng01-349H24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,487,246 - 42,487,819)(42,352,733 - 42,353,816)
sequence
gaattctgagacctgctgggctgcaggggaccctgtgtctctttctcttt
tggggagagggggcattctttttaaaaaattagttgttttgtctatttac
atttcaaatgttagccaccctcctggttttcaccctccctgaaaactccc
cacaccaccaccccctgcctccaagagggtgctgccatacccacccagcc
actcccagcccacctccctatcatttccctatgctggggcatcaagcctt
cacaggacccaggtcttccccttctgccacatataaagctggagttatgg
gtccctccatgtgtattctttggttggaagtttagtccctagtcactctg
ggaggtctggttggttgatattgttgtttcttccttgatgttgcaaatcc
ctttagcaccttcagtcttcccccaactcctccattggggttcctatgct
cagtagatgtttgcctgcaaggatccatatctgcatccataaggctctga
cagagactctcaggagaagtttacctcaggttcctgtcagcaagaaattc
ctgtataagcaagtgtctgggtttgatgattgcaaatgggatggagcccc
aggtggggcagtccctggacagcccctccctcagtctctgctccacttct
tgtccctgcatcatttcctttagacaggagcaattctgggtgaaaatttt
gtgaagggtgggttgctccatcactccccccaggggctgtgcctaagcct
gtgtctcttacacatactgcacctgtatgccaccatgcctgggtttactt
ttgctttgagattgcatttatgtagtctatgctggccttgaatgtgtgat
cttcttgaatcagcccctctagggctgtgatgcagaatgcaccacaaatt
ttggtttttcttagctctcagcactatgaaagcaccttgaatgtgcctat
agtttataatggtctagttcaagtctcataatgactgaatcattttttac
tttgcaga

gaattcccattttgttctctatttcctgaggccaatgaacattgcaagga
aagaatttatatcaagtgatttgtatttttcagataatacacaatcttct
aaacagagtactcacagtaggaaggaccagaatggaaaaatgcaaattcc
ttgtcaagtttgttgcatgtttgatgtcttcctgtattattcagtaggat
gggtagcatttccaataattaatctgttttttgaaaggctttgcatgaat
gtattcaactttgcaagtcataaaattgttaactgtcctccaaggttctt
tattctctcctcttgatggtgggaactgatttttcgaattctatttccaa
agttcatttgcatttacatgtagccttgtgaaaattgttaacaaaaatat
gagatatcccaccttctaggccaagatgattaaagagccaagccaagctt
taacatctttccacttttttcaatttgtttactgttcctttctgtcctcc
tcaaggaactttcaaaataatagatttttagtccatcaggtctccaaaaa
tttagatttaaaaagagccctaagctcccaactactagaaatttaatgtt
actaattttttcacttactttgtaataagactgaaatatctttaacattt
aaacctgtagtccaaattatttggggatacacttcagaagaaaatgctaa
gaaaattgtcctagatatgcagggatcaaaacaaatgtgcattctagaaa
aatttagatttcaaagcaaaatagagataaaatcacaacagagaaacttc
ccttgtggaagaaatcttcaaagggcactttagtttcatttttttgtttg
tttatattttttttatttttgagattataatatacatcattttcctgttt
acccctctacctaatacattctatgaagccacagttacatgatacctaaa
catataaagatgcacaaagaaagagaccttccgaccatttccctcaataa
atattgagtcaaaatactcatgaaattcctgcaaacggaatccaagaatg
catcaaatgatcattcaccttgatcaagtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_42487246_42487819
seq2: B6Ng01-349H24.b_49_622 (reverse)

seq1  AAACCCAGACACTTGCTTATACAGGAATTTCTTGCTGACAGGAACCTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAGACACTTGCTTATACAGGAATTTCTTGCTGACAGGAACCTGAG  50

seq1  GTAAACTTCTCCTGAGAGTCTCTGTCAGAGCCTTATGGATGCAGATATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTTCTCCTGAGAGTCTCTGTCAGAGCCTTATGGATGCAGATATGG  100

seq1  ATCCTTGCAGGCAAACATCTACTGAGCATAGGAACCCCAATGGAGGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGCAGGCAAACATCTACTGAGCATAGGAACCCCAATGGAGGAGTT  150

seq1  GGGGGAAGACTGAAGGTGCTAAAGGGATTTGCAACATCAAGGAAGAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAGACTGAAGGTGCTAAAGGGATTTGCAACATCAAGGAAGAAACA  200

seq1  ACAATATCAACCAACCAGACCTCCCAGAGTGACTAGGGACTAAACTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATCAACCAACCAGACCTCCCAGAGTGACTAGGGACTAAACTTCCA  250

seq1  ACCAAAGAATACACATGGAGGGACCCATAACTCCAGCTTTATATGTGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGAATACACATGGAGGGACCCATAACTCCAGCTTTATATGTGGCA  300

seq1  GAAGGGGAAGACCTGGGTCCTGTGAAGGCTTGATGCCCCAGCATAGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGAAGACCTGGGTCCTGTGAAGGCTTGATGCCCCAGCATAGGGAA  350

seq1  ATGATAGGGAGGTGGGCTGGGAGTGGCTGGGTGGGTATGGCAGCACCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGGGAGGTGGGCTGGGAGTGGCTGGGTGGGTATGGCAGCACCCTC  400

seq1  TTGGAGGCAGGGGGTGGTGGTGTGGGGAGTTTTCAGGGAGGGTGAAAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGCAGGGGGTGGTGGTGTGGGGAGTTTTCAGGGAGGGTGAAAACC  450

seq1  AGGAGGGTGGCTAACATTTGAAATGTAAATAGACAAAACAACTAATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGTGGCTAACATTTGAAATGTAAATAGACAAAACAACTAATTTTT  500

seq1  TAAAAAGAATGCCCCCTCTCCCCAAAAGAGAAAGAGACACAGGGTCCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAATGCCCCCTCTCCCCAAAAGAGAAAGAGACACAGGGTCCCCT  550

seq1  GCAGCCCAGCAGGTCTCAGAATTC  574
      ||||||||||||||||||||||||
seq2  GCAGCCCAGCAGGTCTCAGAATTC  574


seq1: chr2_42352733_42353816
seq2: B6Ng01-349H24.g_67_1147

seq1  GAATTCCCATTTTGTTCTCTATTTCCTGAGGCCAATGAACATTGCAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATTTTGTTCTCTATTTCCTGAGGCCAATGAACATTGCAAGGA  50

seq1  AAGAATTTATATCAAGTGATTTGTATTTTTCAGATAATACACAATCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTATATCAAGTGATTTGTATTTTTCAGATAATACACAATCTTCT  100

seq1  AAACAGAGTACTCACAGTAGGAAGGACCAGAATGGAAAAATGCAAATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGTACTCACAGTAGGAAGGACCAGAATGGAAAAATGCAAATTCC  150

seq1  TTGTCAAGTTTGTTGCATGTTTGATGTCTTCCTGTATTATTCAGTAGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAGTTTGTTGCATGTTTGATGTCTTCCTGTATTATTCAGTAGGAT  200

seq1  GGGTAGCATTTCCAATAATTAATCTGTTTTTTGAAAGGCTTTGCATGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGCATTTCCAATAATTAATCTGTTTTTTGAAAGGCTTTGCATGAAT  250

seq1  GTATTCAACTTTGCAAGTCATAAAATTGTTAACTGTCCTCCAAGGTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCAACTTTGCAAGTCATAAAATTGTTAACTGTCCTCCAAGGTTCTT  300

seq1  TATTCTCTCCTCTTGATGGTGGGAACTGATTTTTCGAATTCTATTTCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCTCCTCTTGATGGTGGGAACTGATTTTTCGAATTCTATTTCCAA  350

seq1  AGTTCATTTGCATTTACATGTAGCCTTGTGAAAATTGTTAACAAAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATTTGCATTTACATGTAGCCTTGTGAAAATTGTTAACAAAAATAT  400

seq1  GAGATATCCCACCTTCTAGGCCAAGATGATTAAAGAGCCAAGCCAAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATCCCACCTTCTAGGCCAAGATGATTAAAGAGCCAAGCCAAGCTT  450

seq1  TAACATCTTTCCACTTTTTTCAATTTGTTTACTGTTCCTTTCTGTCCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCTTTCCACTTTTTTCAATTTGTTTACTGTTCCTTTCTGTCCTCC  500

seq1  TCAAGGAACTTTCAAAATAATAGATTTTTAGTCCATCAGGTCTCCAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGAACTTTCAAAATAATAGATTTTTAGTCCATCAGGTCTCCAAAAA  550

seq1  TTTAGATTTAAAAAGAGCCCTAAGCTCCCAACTACTAGAAATTTAATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATTTAAAAAGAGCCCTAAGCTCCCAACTACTAGAAATTTAATGTT  600

seq1  ACTAATTTTTTCACTTACTTTGTAATAAGACTGAAATATCTTTAACATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTTTTTCACTTACTTTGTAATAAGACTGAAATATCTTTAACATTT  650

seq1  AAACCTGTAGTCCAAATTATTTGGGGATACACTTCAGAAGAAAATGCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGTAGTCCAAATTATTTGGGGATACACTTCAGAAGAAAATGCTAA  700

seq1  GAAAATTGTCCTAGATATGCAGGGATCAAAACAAATGTGCATTCTAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGTCCTAGATATGCAGGGATCAAAACAAATGTGCATTCTAGAAA  750

seq1  AATTTAGATTTCAAAGCAAAATAGAGATAAAATCACAACAGAGAAACTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGATTTCAAAGCAAAATAGAGATAAAATCACAACAGAGAAACTTC  800

seq1  CCTTGTGGAAGAAATCTTCAAAGGGCACTTTAGTTTCA-TTTTTTGTTTG  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCTTGTGGAAGAAATCTTCAAAGGGCACTTTAGTTTCATTTTTTTGTTTG  850

seq1  TTTATA-TTTTTTTATTTTTGAGATTATAATATACATCATTTTCCTGTTT  898
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTTTTTTATTTTTGAGATTATAATATACATCATTTTCCTGTTT  900

seq1  ACCCCTCTACCTAATACATTCTATGAAGCCACAGTTACATGATACCTAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTCTACCTAATACATTCTATGAAGCCACAGTTACATGATACCTAAA  950

seq1  CAATATAAAGATGCAACAAAGAAAGAGAACCTCCGACCAATTTCCCTC-A  997
      | |||||||||||| ||||||||||||| | ||||||| ||||||||| |
seq2  C-ATATAAAGATGC-ACAAAGAAAGAGACCTTCCGACC-ATTTCCCTCAA  997

seq1  TAAATATTGAGTCAAAAATACTCAATGAAATTCCTGCAAACCGAATCCAA  1047
      ||||||||||||| ||||||||| ||||||||||||||||| ||||||||
seq2  TAAATATTGAGTC-AAAATACTC-ATGAAATTCCTGCAAACGGAATCCAA  1045

seq1  GAATGCATCAAAATGATCATTCAACTTGATCAAGTAG  1084
      ||||||||| ||||||||||||| |||||||||||||
seq2  GAATGCATC-AAATGATCATTCACCTTGATCAAGTAG  1081


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