BAC Information

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BAC

Clone NameB6Ng01-349I19
Chromosome2 (Build37)
Map Location 69,262,666 - 69,369,821
singlet/doubletdoublet
Overlap geneLrp2
Upstream geneStk39, LOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443, Lass6, Nostrin, Spc25, G6pc2, Abcb11, Dhrs9
Downstream geneBbs5, Kbtbd10, Fastkd1, Ppig, 4930578N16Rik, Phospho2, LOC433432, Klhl23, Ssb, Mettl5, 4930550G17Rik, Zfp650, Myo3b, LOC100040021, Sp5, 4933404M02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349I19.bB6Ng01-349I19.g
ACCGA130512GA130513
length1,177111
definitionB6Ng01-349I19.b B6Ng01-349I19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,262,666 - 69,263,846)(69,369,711 - 69,369,821)
sequence
gaattcagcaactgctcagaagagccgggacatacagtacatcctgacac
aaacgtacagctttaggcaaagacgtgaaaaaggctcagtaagaatgttt
tccctttcttttcgtcgtcaactgaggaaataaatagtcaatacaataac
agtttgcacccagagccaaacacccagctgaggtttcgattaactggtat
ctgtttggcaccctactttatgaagtaggtttggttttagtcagtcagct
ccagaattccagtcactaagggaggtgacacctgagatgccaggcaaggg
ttgatttaaggtctgtcaagcaagagctcattcaatgaaacagaaactca
gtgtgggacgtgacatggcagatacagatgttgacttggcaattagggtc
acagctggggttagaagacagaggcacgtggaagggtccaactgaatcac
tttgtgtaccttctgtgtggtcagaagcgtctacagtgtatgaagccaac
actggcccctattggtacacttactaatcaggttgacacgtaatgttgaa
tattgattattgattaagtgctgacatgtaaaaacggacccacaaatgaa
gcttaaagggctttcttcctagattgtttcaaaggaaacatgagtactat
ctcttctctagagagacccaaagccctaagccaactcctttcctcaccag
atcatttattcttcagctcagcgaccccactcagcaggcactctcattag
cagaggcagagatgttataatccttctgaaatttacacaagtacaatata
ttcacagcatcacctcctgacaacatcagtgcaagatatacacagtacct
catgataattgtaaaaataggaaatggcatcagtaaaaaagacacacgac
acaccttcaattataggcaaacagagaaaaatatatttttttataaagta
ttgaatgttaacttctttttcatttgtctgtaaaaaatatatgtgcaaaa
gtgagtgtctaaatgttccctagagagttggcaaggctataaaatcagag
tcttcttcacaaggtttgcgtgttctttaaagtgttcttctggtgccagt
gtagcctggaagtcgaccttcttttggaggccttagcaagaagaagaatt
gaagggagcaagccacagctttccttt
caagagaaataccagaaaccactctctcagtattacatcagctctccttt
ttttctttcacaatccctaaagcttgccatggggtgaggactgtgggggg
tggggattgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_69262666_69263846
seq2: B6Ng01-349I19.b_51_1227

seq1  GAATTCAGCAACTGCTCAGAAGAGCCGGGACATACAGTACATCCTGACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAACTGCTCAGAAGAGCCGGGACATACAGTACATCCTGACAC  50

seq1  AAACGTACAGCTTTAGGCAAAGACGTGAAAAAGGCTCAGTAAGAATGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTACAGCTTTAGGCAAAGACGTGAAAAAGGCTCAGTAAGAATGTTT  100

seq1  TCCCTTTCTTTTCGTCGTCAACTGAGGAAATAAATAGTCAATACAATAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCTTTTCGTCGTCAACTGAGGAAATAAATAGTCAATACAATAAC  150

seq1  AGTTTGCACCCAGAGCCAAACACCCAGCTGAGGTTTCGATTAACTGGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCACCCAGAGCCAAACACCCAGCTGAGGTTTCGATTAACTGGTAT  200

seq1  CTGTTTGGCACCCTACTTTATGAAGTAGGTTTGGTTTTAGTCAGTCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGGCACCCTACTTTATGAAGTAGGTTTGGTTTTAGTCAGTCAGCT  250

seq1  CCAGAATTCCAGTCACTAAGGGAGGTGACACCTGAGATGCCAGGCAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATTCCAGTCACTAAGGGAGGTGACACCTGAGATGCCAGGCAAGGG  300

seq1  TTGATTTAAGGTCTGTCAAGCAAGAGCTCATTCAATGAAACAGAAACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTAAGGTCTGTCAAGCAAGAGCTCATTCAATGAAACAGAAACTCA  350

seq1  GTGTGGGACGTGACATGGCAGATACAGATGTTGACTTGGCAATTAGGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGACGTGACATGGCAGATACAGATGTTGACTTGGCAATTAGGGTC  400

seq1  ACAGCTGGGGTTAGAAGACAGAGGCACGTGGAAGGGTCCAACTGAATCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGGGGTTAGAAGACAGAGGCACGTGGAAGGGTCCAACTGAATCAC  450

seq1  TTTGTGTACCTTCTGTGTGGTCAGAAGCGTCTACAGTGTATGAAGCCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTACCTTCTGTGTGGTCAGAAGCGTCTACAGTGTATGAAGCCAAC  500

seq1  ACTGGCCCCTATTGGTACACTTACTAATCAGGTTGACACGTAATGTTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCCCTATTGGTACACTTACTAATCAGGTTGACACGTAATGTTGAA  550

seq1  TATTGATTATTGATTAAGTGCTGACATGTAAAAACGGACCCACAAATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATTATTGATTAAGTGCTGACATGTAAAAACGGACCCACAAATGAA  600

seq1  GCTTAAAGGGCTTTCTTCCTAGATTGTTTCAAAGGAAACATGAGTACTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAGGGCTTTCTTCCTAGATTGTTTCAAAGGAAACATGAGTACTAT  650

seq1  CTCTTCTCTAGAGAGACCCAAAGCCCTAAGCCAACTCCTTTCCTCACCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCTAGAGAGACCCAAAGCCCTAAGCCAACTCCTTTCCTCACCAG  700

seq1  ATCATTTATTCTTCAGCTCAGCGACCCCACTCAGCAGGCACTCTCATTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTATTCTTCAGCTCAGCGACCCCACTCAGCAGGCACTCTCATTAG  750

seq1  CAGAGGCAGAGATGTTATAATCCTTCTGAAATTTACACAAGTACAATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGAGATGTTATAATCCTTCTGAAATTTACACAAGTACAATATA  800

seq1  TTCACAGCATCACCTCCTGACAACATCAGTGCAAGATATACACAGTACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGCATCACCTCCTGACAACATCAGTGCAAGATATACACAGTACCT  850

seq1  CATGATAATTGTAAAAATAGGAAATGGCATCAGTAAAAAAGACACACGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATAATTGTAAAAATAGGAAATGGCATCAGTAAAAAAGACACACGAC  900

seq1  ACACCTTCAATTATAGGCAAACAGAGAAAAATATATTTTTTTATAAAGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTCAATTATAGGCAAACAGAGAAAAATATATTTTTTTATAAAGTA  950

seq1  TTGAATGTTAACTTCTTTTTCATTTGTCTGTAAAAAATATATGTGCAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGTTAACTTCTTTTTCATTTGTCTGTAAAAAATATATGTGCAAAA  1000

seq1  GTGAGTGTCTAAATGTTCCCTAGAGAGTTGGCAAGGCTAT-ACATCAGAG  1049
      |||||||||||||||||||||||||||||||||||||||| | |||||||
seq2  GTGAGTGTCTAAATGTTCCCTAGAGAGTTGGCAAGGCTATAAAATCAGAG  1050

seq1  TCTTCCTTCACAAGGTTTGCGGTGTCTTTAAAGGTGTCTTCT-GTGGCAG  1098
      |||| ||||||||||||||||   |||||||||   |||||| ||| |||
seq2  TCTT-CTTCACAAGGTTTGCGTGTTCTTTAAAGTGTTCTTCTGGTGCCAG  1099

seq1  TGTAGCCTGG-AGTCGAACTTCTTTTTGAAGCTTTAGCAGGAAGAGAAGG  1147
      |||||||||| |||||| |||||||| || || |||||| |||||  |  
seq2  TGTAGCCTGGAAGTCGACCTTCTTTTGGAGGCCTTAGCAAGAAGAAGA--  1147

seq1  AGATGGAGGGGGAGCCACAGCCACAGC-TTCCTTT  1181
        || ||  ||||||   ||||||||| |||||||
seq2  --ATTGA-AGGGAGC--AAGCCACAGCTTTCCTTT  1177

seq1: chr2_69369711_69369821
seq2: B6Ng01-349I19.g_70_180 (reverse)

seq1  TACAATCCCCACCCCCCACAGTCCTCACCCCATGGCAAGCTTTAGGGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATCCCCACCCCCCACAGTCCTCACCCCATGGCAAGCTTTAGGGATT  50

seq1  GTGAAAGAAAAAAAGGAGAGCTGATGTAATACTGAGAGAGTGGTTTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGAAAAAAAGGAGAGCTGATGTAATACTGAGAGAGTGGTTTCTGG  100

seq1  TATTTCTCTTG  111
      |||||||||||
seq2  TATTTCTCTTG  111